Cp4.1LG17g08960 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG17g08960
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description(6-4)DNA photolyase
LocationCp4.1LG17: 4904832 .. 4905188 (-)
RNA-Seq ExpressionCp4.1LG17g08960
SyntenyCp4.1LG17g08960
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGACCAATCTTCCCGTTTTCCATGTCGCTCCGATAAGGGCTTCGTCATCTGGAAAATCCGAACCTAATCGCCGGAAGGCTGCCGCGCCAAAGTGGTGGTCACCGATCTTTGGATGGTCCTCCGAGCCGGACTACATCGGTTCTTCCGCCGCGGATCAGCTTGTTCAGAATGCCGATCCAGAGCTCGACGGCGGACGACCGAAATCCAAATTCCTGCCAGGCTGCTTCACGGAGGAGAAGGCGAAACTACTCCGGATGAAGACGCTGGAGAGCTCTACTTTTCATGACATTATGTATCATTCAGCAATCGCGTCGCGCCTCGCCTCCGATTTGTCGGACCGAAGCAAGGAATAG

mRNA sequence

ATGGCGACCAATCTTCCCGTTTTCCATGTCGCTCCGATAAGGGCTTCGTCATCTGGAAAATCCGAACCTAATCGCCGGAAGGCTGCCGCGCCAAAGTGGTGGTCACCGATCTTTGGATGGTCCTCCGAGCCGGACTACATCGGTTCTTCCGCCGCGGATCAGCTTGTTCAGAATGCCGATCCAGAGCTCGACGGCGGACGACCGAAATCCAAATTCCTGCCAGGCTGCTTCACGGAGGAGAAGGCGAAACTACTCCGGATGAAGACGCTGGAGAGCTCTACTTTTCATGACATTATGTATCATTCAGCAATCGCGTCGCGCCTCGCCTCCGATTTGTCGGACCGAAGCAAGGAATAG

Coding sequence (CDS)

ATGGCGACCAATCTTCCCGTTTTCCATGTCGCTCCGATAAGGGCTTCGTCATCTGGAAAATCCGAACCTAATCGCCGGAAGGCTGCCGCGCCAAAGTGGTGGTCACCGATCTTTGGATGGTCCTCCGAGCCGGACTACATCGGTTCTTCCGCCGCGGATCAGCTTGTTCAGAATGCCGATCCAGAGCTCGACGGCGGACGACCGAAATCCAAATTCCTGCCAGGCTGCTTCACGGAGGAGAAGGCGAAACTACTCCGGATGAAGACGCTGGAGAGCTCTACTTTTCATGACATTATGTATCATTCAGCAATCGCGTCGCGCCTCGCCTCCGATTTGTCGGACCGAAGCAAGGAATAG

Protein sequence

MATNLPVFHVAPIRASSSGKSEPNRRKAAAPKWWSPIFGWSSEPDYIGSSAADQLVQNADPELDGGRPKSKFLPGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRSKE
Homology
BLAST of Cp4.1LG17g08960 vs. NCBI nr
Match: XP_023514525.1 (uncharacterized protein LOC111778781 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 243 bits (619), Expect = 6.28e-81
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 0

Query: 1   MATNLPVFHVAPIRASSSGKSEPNRRKAAAPKWWSPIFGWSSEPDYIGSSAADQLVQNAD 60
           MATNLPVFHVAPIRASSSGKSEPNRRKAAAPKWWSPIFGWSSEPDYIGSSAADQLVQNAD
Sbjct: 1   MATNLPVFHVAPIRASSSGKSEPNRRKAAAPKWWSPIFGWSSEPDYIGSSAADQLVQNAD 60

Query: 61  PELDGGRPKSKFLPGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRSKE 118
           PELDGGRPKSKFLPGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRSKE
Sbjct: 61  PELDGGRPKSKFLPGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRSKE 118

BLAST of Cp4.1LG17g08960 vs. NCBI nr
Match: XP_022960101.1 (uncharacterized protein LOC111460952 [Cucurbita moschata] >KAG6593414.1 hypothetical protein SDJN03_12890, partial [Cucurbita argyrosperma subsp. sororia] >KAG7025762.1 hypothetical protein SDJN02_12260, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 238 bits (608), Expect = 3.00e-79
Identity = 116/118 (98.31%), Postives = 116/118 (98.31%), Query Frame = 0

Query: 1   MATNLPVFHVAPIRASSSGKSEPNRRKAAAPKWWSPIFGWSSEPDYIGSSAADQLVQNAD 60
           MATNLPVFH APIRASSSGKSEPNRRKAAAPKWWSPIFGWSSEPDYIGSSAADQ VQNAD
Sbjct: 1   MATNLPVFHAAPIRASSSGKSEPNRRKAAAPKWWSPIFGWSSEPDYIGSSAADQPVQNAD 60

Query: 61  PELDGGRPKSKFLPGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRSKE 118
           PELDGGRPKSKFLPGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRSKE
Sbjct: 61  PELDGGRPKSKFLPGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRSKE 118

BLAST of Cp4.1LG17g08960 vs. NCBI nr
Match: XP_023004861.1 (uncharacterized protein LOC111498038 [Cucurbita maxima])

HSP 1 Score: 237 bits (604), Expect = 1.22e-78
Identity = 116/118 (98.31%), Postives = 116/118 (98.31%), Query Frame = 0

Query: 1   MATNLPVFHVAPIRASSSGKSEPNRRKAAAPKWWSPIFGWSSEPDYIGSSAADQLVQNAD 60
           MATNLPVFHVAPIRASSSGKSEPNRRKAAAPKWWSPIFGWSSEPDYIGSSAADQ VQNAD
Sbjct: 1   MATNLPVFHVAPIRASSSGKSEPNRRKAAAPKWWSPIFGWSSEPDYIGSSAADQPVQNAD 60

Query: 61  PELDGGRPKSKFLPGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRSKE 118
           PELDGGR KSKFLPGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRSKE
Sbjct: 61  PELDGGRAKSKFLPGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRSKE 118

BLAST of Cp4.1LG17g08960 vs. NCBI nr
Match: XP_038898524.1 (uncharacterized protein LOC120086132 [Benincasa hispida])

HSP 1 Score: 213 bits (542), Expect = 3.50e-69
Identity = 103/118 (87.29%), Postives = 110/118 (93.22%), Query Frame = 0

Query: 1   MATNLPVFHVAPIRASSSGKSEPNRRKAAAPKWWSPIFGWSSEPDYIGSSAADQLVQNAD 60
           MATNL VFH APIRASSSGKSEPNRRKA APKWWSPIFGWSSEPDY+ SSAA+Q V NA+
Sbjct: 1   MATNLAVFHPAPIRASSSGKSEPNRRKATAPKWWSPIFGWSSEPDYVLSSAAEQSVLNAE 60

Query: 61  PELDGGRPKSKFLPGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRSKE 118
           PEL+GGR +S+F PGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRSK+
Sbjct: 61  PELEGGRTRSRFAPGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRSKK 118

BLAST of Cp4.1LG17g08960 vs. NCBI nr
Match: XP_008461069.1 (PREDICTED: uncharacterized protein LOC103499770 [Cucumis melo] >KAA0058783.1 uncharacterized protein E6C27_scaffold339G002570 [Cucumis melo var. makuwa] >TYK10577.1 uncharacterized protein E5676_scaffold459G002310 [Cucumis melo var. makuwa])

HSP 1 Score: 201 bits (511), Expect = 2.13e-64
Identity = 102/122 (83.61%), Postives = 107/122 (87.70%), Query Frame = 0

Query: 1   MATNLPVFHVAPIRASSS---GKSEPNRRKAAAPKWWSPIFGWSSEPDYIGSSAAD-QLV 60
           MATN  VFH  PIRASSS   GKS+PNRR AA PKWWSPIFGWSSEPDY+ SSAA+ Q V
Sbjct: 1   MATNFAVFHPPPIRASSSASSGKSQPNRRNAAGPKWWSPIFGWSSEPDYVVSSAAEVQSV 60

Query: 61  QNADPELDGGRPKSKFLPGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRS 118
           QNADPELDGGR  S+F PGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRS
Sbjct: 61  QNADPELDGGRTGSRFAPGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRS 120

BLAST of Cp4.1LG17g08960 vs. ExPASy TrEMBL
Match: A0A6J1H6P9 (uncharacterized protein LOC111460952 OS=Cucurbita moschata OX=3662 GN=LOC111460952 PE=4 SV=1)

HSP 1 Score: 238 bits (608), Expect = 1.45e-79
Identity = 116/118 (98.31%), Postives = 116/118 (98.31%), Query Frame = 0

Query: 1   MATNLPVFHVAPIRASSSGKSEPNRRKAAAPKWWSPIFGWSSEPDYIGSSAADQLVQNAD 60
           MATNLPVFH APIRASSSGKSEPNRRKAAAPKWWSPIFGWSSEPDYIGSSAADQ VQNAD
Sbjct: 1   MATNLPVFHAAPIRASSSGKSEPNRRKAAAPKWWSPIFGWSSEPDYIGSSAADQPVQNAD 60

Query: 61  PELDGGRPKSKFLPGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRSKE 118
           PELDGGRPKSKFLPGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRSKE
Sbjct: 61  PELDGGRPKSKFLPGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRSKE 118

BLAST of Cp4.1LG17g08960 vs. ExPASy TrEMBL
Match: A0A6J1KTB2 (uncharacterized protein LOC111498038 OS=Cucurbita maxima OX=3661 GN=LOC111498038 PE=4 SV=1)

HSP 1 Score: 237 bits (604), Expect = 5.91e-79
Identity = 116/118 (98.31%), Postives = 116/118 (98.31%), Query Frame = 0

Query: 1   MATNLPVFHVAPIRASSSGKSEPNRRKAAAPKWWSPIFGWSSEPDYIGSSAADQLVQNAD 60
           MATNLPVFHVAPIRASSSGKSEPNRRKAAAPKWWSPIFGWSSEPDYIGSSAADQ VQNAD
Sbjct: 1   MATNLPVFHVAPIRASSSGKSEPNRRKAAAPKWWSPIFGWSSEPDYIGSSAADQPVQNAD 60

Query: 61  PELDGGRPKSKFLPGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRSKE 118
           PELDGGR KSKFLPGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRSKE
Sbjct: 61  PELDGGRAKSKFLPGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRSKE 118

BLAST of Cp4.1LG17g08960 vs. ExPASy TrEMBL
Match: A0A5D3CF29 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G002310 PE=4 SV=1)

HSP 1 Score: 201 bits (511), Expect = 1.03e-64
Identity = 102/122 (83.61%), Postives = 107/122 (87.70%), Query Frame = 0

Query: 1   MATNLPVFHVAPIRASSS---GKSEPNRRKAAAPKWWSPIFGWSSEPDYIGSSAAD-QLV 60
           MATN  VFH  PIRASSS   GKS+PNRR AA PKWWSPIFGWSSEPDY+ SSAA+ Q V
Sbjct: 1   MATNFAVFHPPPIRASSSASSGKSQPNRRNAAGPKWWSPIFGWSSEPDYVVSSAAEVQSV 60

Query: 61  QNADPELDGGRPKSKFLPGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRS 118
           QNADPELDGGR  S+F PGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRS
Sbjct: 61  QNADPELDGGRTGSRFAPGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRS 120

BLAST of Cp4.1LG17g08960 vs. ExPASy TrEMBL
Match: A0A1S3CEC0 (uncharacterized protein LOC103499770 OS=Cucumis melo OX=3656 GN=LOC103499770 PE=4 SV=1)

HSP 1 Score: 201 bits (511), Expect = 1.03e-64
Identity = 102/122 (83.61%), Postives = 107/122 (87.70%), Query Frame = 0

Query: 1   MATNLPVFHVAPIRASSS---GKSEPNRRKAAAPKWWSPIFGWSSEPDYIGSSAAD-QLV 60
           MATN  VFH  PIRASSS   GKS+PNRR AA PKWWSPIFGWSSEPDY+ SSAA+ Q V
Sbjct: 1   MATNFAVFHPPPIRASSSASSGKSQPNRRNAAGPKWWSPIFGWSSEPDYVVSSAAEVQSV 60

Query: 61  QNADPELDGGRPKSKFLPGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRS 118
           QNADPELDGGR  S+F PGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRS
Sbjct: 61  QNADPELDGGRTGSRFAPGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRS 120

BLAST of Cp4.1LG17g08960 vs. ExPASy TrEMBL
Match: A0A0A0K8X0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G433380 PE=4 SV=1)

HSP 1 Score: 191 bits (485), Expect = 1.08e-60
Identity = 98/126 (77.78%), Postives = 105/126 (83.33%), Query Frame = 0

Query: 1   MATNLPVFHVAPIRASSS-------GKSEPNRRKAAAPKWWSPIFGWSSEPDYIGSSAAD 60
           MATN  VFH API ASSS       GK +PNR  AAAPKWWSPIFGWSSEPDY+ SSAA+
Sbjct: 1   MATNFAVFHPAPITASSSSSSSSSSGKYQPNRPNAAAPKWWSPIFGWSSEPDYVVSSAAE 60

Query: 61  -QLVQNADPELDGGRPKSKFLPGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDL 118
            Q +QNADPEL GGR +S+F PGCFTEEKAKLLRMKT ESSTFHDIMYHSAIASRLASDL
Sbjct: 61  VQSIQNADPELHGGRIRSRFAPGCFTEEKAKLLRMKTRESSTFHDIMYHSAIASRLASDL 120

BLAST of Cp4.1LG17g08960 vs. TAIR 10
Match: AT1G52720.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G15630.1); Has 61 Blast hits to 61 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 61; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 105.1 bits (261), Expect = 3.8e-23
Identity = 54/107 (50.47%), Postives = 72/107 (67.29%), Query Frame = 0

Query: 13  IRASS-SGKSEPNRRKAAAPKWWSPIFGWSSEPDYIGSSAADQLVQNADPELDGGRPKSK 72
           IRASS SG   P++ +  +  WW+P+FG  S+PDY+   ++   V     ++ G     K
Sbjct: 13  IRASSGSGSLNPDQNRKKSAAWWAPLFGLPSDPDYLNIESSCSTVNPDKTDISGS--GQK 72

Query: 73  FLPGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRSKE 119
           F  GCFTEEKAK LR KT E+STFHD+MYHSAIASRLASD++ R ++
Sbjct: 73  FRRGCFTEEKAKQLRRKTAEASTFHDVMYHSAIASRLASDITGRVED 117

BLAST of Cp4.1LG17g08960 vs. TAIR 10
Match: AT3G15630.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G52720.1); Has 61 Blast hits to 61 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 61; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 100.9 bits (250), Expect = 7.2e-22
Identity = 58/113 (51.33%), Postives = 76/113 (67.26%), Query Frame = 0

Query: 1   MATNLPVFHVAPIRASSSGKSEPNRRK-AAAPKWWSPIFGWSSEPDYIGSSAADQLVQNA 60
           MAT +    ++ IRASS  +S+P R+K  ++  WW+P+FG SSEPDY+  +       N 
Sbjct: 1   MATIISCSALSSIRASS--ESDPARKKPVSSVSWWAPLFGMSSEPDYVNKTV------NL 60

Query: 61  DPELDGGRPKSKFLPGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDL 113
           + +LD    +S  L  C TEEKAK LR KT E+STFHD+MYHSAIASRLASD+
Sbjct: 61  ESDLDKAEKRS--LRCCLTEEKAKQLRRKTAEASTFHDVMYHSAIASRLASDV 103

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_023514525.16.28e-81100.00uncharacterized protein LOC111778781 [Cucurbita pepo subsp. pepo][more]
XP_022960101.13.00e-7998.31uncharacterized protein LOC111460952 [Cucurbita moschata] >KAG6593414.1 hypothet... [more]
XP_023004861.11.22e-7898.31uncharacterized protein LOC111498038 [Cucurbita maxima][more]
XP_038898524.13.50e-6987.29uncharacterized protein LOC120086132 [Benincasa hispida][more]
XP_008461069.12.13e-6483.61PREDICTED: uncharacterized protein LOC103499770 [Cucumis melo] >KAA0058783.1 unc... [more]
Match NameE-valueIdentityDescription
A0A6J1H6P91.45e-7998.31uncharacterized protein LOC111460952 OS=Cucurbita moschata OX=3662 GN=LOC1114609... [more]
A0A6J1KTB25.91e-7998.31uncharacterized protein LOC111498038 OS=Cucurbita maxima OX=3661 GN=LOC111498038... [more]
A0A5D3CF291.03e-6483.61Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3CEC01.03e-6483.61uncharacterized protein LOC103499770 OS=Cucumis melo OX=3656 GN=LOC103499770 PE=... [more]
A0A0A0K8X01.08e-6077.78Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G433380 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT1G52720.13.8e-2350.47unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT3G15630.17.2e-2251.33unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34198OS01G0175100 PROTEINcoord: 1..117
NoneNo IPR availablePANTHERPTHR34198:SF12BNAA05G35680D PROTEINcoord: 1..117

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG17g08960.1Cp4.1LG17g08960.1mRNA