Cp4.1LG17g08960 (gene) Cucurbita pepo (MU‐CU‐16) v4.1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCGACCAATCTTCCCGTTTTCCATGTCGCTCCGATAAGGGCTTCGTCATCTGGAAAATCCGAACCTAATCGCCGGAAGGCTGCCGCGCCAAAGTGGTGGTCACCGATCTTTGGATGGTCCTCCGAGCCGGACTACATCGGTTCTTCCGCCGCGGATCAGCTTGTTCAGAATGCCGATCCAGAGCTCGACGGCGGACGACCGAAATCCAAATTCCTGCCAGGCTGCTTCACGGAGGAGAAGGCGAAACTACTCCGGATGAAGACGCTGGAGAGCTCTACTTTTCATGACATTATGTATCATTCAGCAATCGCGTCGCGCCTCGCCTCCGATTTGTCGGACCGAAGCAAGGAATAG ATGGCGACCAATCTTCCCGTTTTCCATGTCGCTCCGATAAGGGCTTCGTCATCTGGAAAATCCGAACCTAATCGCCGGAAGGCTGCCGCGCCAAAGTGGTGGTCACCGATCTTTGGATGGTCCTCCGAGCCGGACTACATCGGTTCTTCCGCCGCGGATCAGCTTGTTCAGAATGCCGATCCAGAGCTCGACGGCGGACGACCGAAATCCAAATTCCTGCCAGGCTGCTTCACGGAGGAGAAGGCGAAACTACTCCGGATGAAGACGCTGGAGAGCTCTACTTTTCATGACATTATGTATCATTCAGCAATCGCGTCGCGCCTCGCCTCCGATTTGTCGGACCGAAGCAAGGAATAG ATGGCGACCAATCTTCCCGTTTTCCATGTCGCTCCGATAAGGGCTTCGTCATCTGGAAAATCCGAACCTAATCGCCGGAAGGCTGCCGCGCCAAAGTGGTGGTCACCGATCTTTGGATGGTCCTCCGAGCCGGACTACATCGGTTCTTCCGCCGCGGATCAGCTTGTTCAGAATGCCGATCCAGAGCTCGACGGCGGACGACCGAAATCCAAATTCCTGCCAGGCTGCTTCACGGAGGAGAAGGCGAAACTACTCCGGATGAAGACGCTGGAGAGCTCTACTTTTCATGACATTATGTATCATTCAGCAATCGCGTCGCGCCTCGCCTCCGATTTGTCGGACCGAAGCAAGGAATAG MATNLPVFHVAPIRASSSGKSEPNRRKAAAPKWWSPIFGWSSEPDYIGSSAADQLVQNADPELDGGRPKSKFLPGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRSKE Homology
BLAST of Cp4.1LG17g08960 vs. NCBI nr
Match: XP_023514525.1 (uncharacterized protein LOC111778781 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 243 bits (619), Expect = 6.28e-81 Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 0
BLAST of Cp4.1LG17g08960 vs. NCBI nr
Match: XP_022960101.1 (uncharacterized protein LOC111460952 [Cucurbita moschata] >KAG6593414.1 hypothetical protein SDJN03_12890, partial [Cucurbita argyrosperma subsp. sororia] >KAG7025762.1 hypothetical protein SDJN02_12260, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 238 bits (608), Expect = 3.00e-79 Identity = 116/118 (98.31%), Postives = 116/118 (98.31%), Query Frame = 0
BLAST of Cp4.1LG17g08960 vs. NCBI nr
Match: XP_023004861.1 (uncharacterized protein LOC111498038 [Cucurbita maxima]) HSP 1 Score: 237 bits (604), Expect = 1.22e-78 Identity = 116/118 (98.31%), Postives = 116/118 (98.31%), Query Frame = 0
BLAST of Cp4.1LG17g08960 vs. NCBI nr
Match: XP_038898524.1 (uncharacterized protein LOC120086132 [Benincasa hispida]) HSP 1 Score: 213 bits (542), Expect = 3.50e-69 Identity = 103/118 (87.29%), Postives = 110/118 (93.22%), Query Frame = 0
BLAST of Cp4.1LG17g08960 vs. NCBI nr
Match: XP_008461069.1 (PREDICTED: uncharacterized protein LOC103499770 [Cucumis melo] >KAA0058783.1 uncharacterized protein E6C27_scaffold339G002570 [Cucumis melo var. makuwa] >TYK10577.1 uncharacterized protein E5676_scaffold459G002310 [Cucumis melo var. makuwa]) HSP 1 Score: 201 bits (511), Expect = 2.13e-64 Identity = 102/122 (83.61%), Postives = 107/122 (87.70%), Query Frame = 0
BLAST of Cp4.1LG17g08960 vs. ExPASy TrEMBL
Match: A0A6J1H6P9 (uncharacterized protein LOC111460952 OS=Cucurbita moschata OX=3662 GN=LOC111460952 PE=4 SV=1) HSP 1 Score: 238 bits (608), Expect = 1.45e-79 Identity = 116/118 (98.31%), Postives = 116/118 (98.31%), Query Frame = 0
BLAST of Cp4.1LG17g08960 vs. ExPASy TrEMBL
Match: A0A6J1KTB2 (uncharacterized protein LOC111498038 OS=Cucurbita maxima OX=3661 GN=LOC111498038 PE=4 SV=1) HSP 1 Score: 237 bits (604), Expect = 5.91e-79 Identity = 116/118 (98.31%), Postives = 116/118 (98.31%), Query Frame = 0
BLAST of Cp4.1LG17g08960 vs. ExPASy TrEMBL
Match: A0A5D3CF29 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G002310 PE=4 SV=1) HSP 1 Score: 201 bits (511), Expect = 1.03e-64 Identity = 102/122 (83.61%), Postives = 107/122 (87.70%), Query Frame = 0
BLAST of Cp4.1LG17g08960 vs. ExPASy TrEMBL
Match: A0A1S3CEC0 (uncharacterized protein LOC103499770 OS=Cucumis melo OX=3656 GN=LOC103499770 PE=4 SV=1) HSP 1 Score: 201 bits (511), Expect = 1.03e-64 Identity = 102/122 (83.61%), Postives = 107/122 (87.70%), Query Frame = 0
BLAST of Cp4.1LG17g08960 vs. ExPASy TrEMBL
Match: A0A0A0K8X0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G433380 PE=4 SV=1) HSP 1 Score: 191 bits (485), Expect = 1.08e-60 Identity = 98/126 (77.78%), Postives = 105/126 (83.33%), Query Frame = 0
BLAST of Cp4.1LG17g08960 vs. TAIR 10
Match: AT1G52720.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G15630.1); Has 61 Blast hits to 61 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 61; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 105.1 bits (261), Expect = 3.8e-23 Identity = 54/107 (50.47%), Postives = 72/107 (67.29%), Query Frame = 0
BLAST of Cp4.1LG17g08960 vs. TAIR 10
Match: AT3G15630.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G52720.1); Has 61 Blast hits to 61 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 61; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 100.9 bits (250), Expect = 7.2e-22 Identity = 58/113 (51.33%), Postives = 76/113 (67.26%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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