Cp4.1LG15g01590 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG15g01590
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	protein RALF-like 10
Location	Cp4.1LG15: 1299292 .. 1299531 (-)
RNA-Seq Expression	Cp4.1LG15g01590
Synteny	Cp4.1LG15g01590

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGTTGTGGATGATATGCTTAGTTTTGATTAGCATGGTGGTGATGGCCCGAGCAGATGAAGAGGAGAGTAAACCCATTGAGTTTTTGAATTGCAATCAACCAAAGCCTCCTCCGGCTTGCCTTCAAATAATACATAGGAGATTTCCCCGCCCTCCCTTACAGGGTGACCGTGGTTGCAACGCAATTACCCGTTGTCGTGGAGGAATTGGATCAGGTAGACCACCACCGCACATTTGA

mRNA sequence

ATGAAGTTGTGGATGATATGCTTAGTTTTGATTAGCATGGTGGTGATGGCCCGAGCAGATGAAGAGGAGAGTAAACCCATTGAGTTTTTGAATTGCAATCAACCAAAGCCTCCTCCGGCTTGCCTTCAAATAATACATAGGAGATTTCCCCGCCCTCCCTTACAGGGTGACCGTGGTTGCAACGCAATTACCCGTTGTCGTGGAGGAATTGGATCAGGTAGACCACCACCGCACATTTGA

Coding sequence (CDS)

ATGAAGTTGTGGATGATATGCTTAGTTTTGATTAGCATGGTGGTGATGGCCCGAGCAGATGAAGAGGAGAGTAAACCCATTGAGTTTTTGAATTGCAATCAACCAAAGCCTCCTCCGGCTTGCCTTCAAATAATACATAGGAGATTTCCCCGCCCTCCCTTACAGGGTGACCGTGGTTGCAACGCAATTACCCGTTGTCGTGGAGGAATTGGATCAGGTAGACCACCACCGCACATTTGA

Protein sequence

MKLWMICLVLISMVVMARADEEESKPIEFLNCNQPKPPPACLQIIHRRFPRPPLQGDRGCNAITRCRGGIGSGRPPPHI

Homology

[Close]

BLAST of Cp4.1LG15g01590 vs. NCBI nr
Match: XP_038877580.1 (protein RALF-like 11 [Benincasa hispida])

HSP 1 Score: 63.9 bits (154), Expect = 2.21e-11
Identity = 33/70 (47.14%), Postives = 45/70 (64.29%), Query Frame = 0


Query: 1  MKLWMICLVLISMVVMARADEEESKPIEFLN-CNQPKPPPACLQIIHRRFPRPPLQGDRG 60
          MK W+IC+V ISM+V+      E K ++FL+ CNQP PPP C ++  +    P    +RG
Sbjct: 1  MKSWLICVVFISMLVVGPGVAAEKKYLQFLDPCNQPNPPPTCSEVKEQVEANP---YNRG 60

Query: 61 CNAITRCRGG 69
          C+AI RCRGG
Sbjct: 61 CSAIHRCRGG 67

[Close]

BLAST of Cp4.1LG15g01590 vs. NCBI nr
Match: KAE8637268.1 (hypothetical protein CSA_017684 [Cucumis sativus])

HSP 1 Score: 60.8 bits (146), Expect = 3.73e-10
Identity = 31/69 (44.93%), Postives = 44/69 (63.77%), Query Frame = 0


Query: 1  MKLWMICLVLISMVVMARADEEESKPIEFLN-CNQPKPPPACLQIIHRRFPRPPLQGDRG 60
          MK W+IC+V ISM+VM++    ++  ++F N C+ P PPP+C   +    P  P   DRG
Sbjct: 1  MKSWLICVVFISMLVMSQEVGAQTNHLKFPNPCDLPSPPPSCSSKVKDHAPTNPY--DRG 60

Query: 61 CNAITRCRG 68
          C+AI RCRG
Sbjct: 61 CSAIHRCRG 67

[Close]

BLAST of Cp4.1LG15g01590 vs. NCBI nr
Match: KGN58523.2 (hypothetical protein Csa_001790 [Cucumis sativus])

HSP 1 Score: 60.8 bits (146), Expect = 4.22e-10
Identity = 35/79 (44.30%), Postives = 49/79 (62.03%), Query Frame = 0


Query: 1  MKLWMICLVLISMVVMARADEEESKPIEFLNCNQPKPPPACLQIIHRRFPRPPLQGDRGC 60
          M+ WMIC+V ISMVVM +  E + K ++F++CNQPKPPP C  +   +        +RGC
Sbjct: 1  MRSWMICVVFISMVVMFQNVEADRKYLKFVDCNQPKPPPFCGLLKSTQLV------ERGC 60

Query: 61 NAITR-CRG-GIGSGRPPP 77
          +A+   CRG G  + RP P
Sbjct: 61 SALPSICRGSGSAARRPNP 73

[Close]

BLAST of Cp4.1LG15g01590 vs. NCBI nr
Match: XP_022947821.1 (protein RALF-like 10 [Cucurbita moschata])

HSP 1 Score: 58.9 bits (141), Expect = 2.04e-09
Identity = 33/70 (47.14%), Postives = 45/70 (64.29%), Query Frame = 0


Query: 1  MKLWMICLVLISMVVMARADEEESKPIEFLN-CNQPKPPPACLQIIHRRFPRPPLQGDRG 60
          M+ W+ICLVLI M+V+++    E+K ++F + C QP PPP C   I    P  P +  RG
Sbjct: 1  MRSWLICLVLIGMLVVSQDVASETKFLKFPDPCQQPNPPPGCS--IGNAVPANPYR--RG 60

Query: 61 CNAITRCRGG 69
          C+ ITRCRGG
Sbjct: 61 CSKITRCRGG 66

[Close]

BLAST of Cp4.1LG15g01590 vs. NCBI nr
Match: XP_016900883.1 (PREDICTED: protein RALF-like 30 [Cucumis melo])

HSP 1 Score: 58.5 bits (140), Expect = 2.97e-09
Identity = 32/70 (45.71%), Postives = 44/70 (62.86%), Query Frame = 0


Query: 1  MKLWMICLVLISMVVMARADEEESKPIEFLN-CNQPKPPPACLQIIHRRFPRPPLQGDRG 60
          MK W+IC  L+SM+VM      ++K ++FL+ C QP PP +C +  H R   P +  DRG
Sbjct: 1  MKSWLICFALLSMLVMGHEVAAKTKFLKFLDPCLQPSPPRSCYK--HERVDSP-IAYDRG 60

Query: 61 CNAITRCRGG 69
          C+ I RCRGG
Sbjct: 61 CSPILRCRGG 67

[Close]

BLAST of Cp4.1LG15g01590 vs. ExPASy TrEMBL
Match: A0A0A0M0X3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G690160 PE=3 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.81e-10
Identity = 31/69 (44.93%), Postives = 44/69 (63.77%), Query Frame = 0


Query: 1  MKLWMICLVLISMVVMARADEEESKPIEFLN-CNQPKPPPACLQIIHRRFPRPPLQGDRG 60
          MK W+IC+V ISM+VM++    ++  ++F N C+ P PPP+C   +    P  P   DRG
Sbjct: 1  MKSWLICVVFISMLVMSQEVGAQTNHLKFPNPCDLPSPPPSCSSKVKDHAPTNPY--DRG 60

Query: 61 CNAITRCRG 68
          C+AI RCRG
Sbjct: 61 CSAIHRCRG 67

[Close]

BLAST of Cp4.1LG15g01590 vs. ExPASy TrEMBL
Match: A0A6J1G7J2 (protein RALF-like 10 OS=Cucurbita moschata OX=3662 GN=LOC111451581 PE=3 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 9.89e-10
Identity = 33/70 (47.14%), Postives = 45/70 (64.29%), Query Frame = 0


Query: 1  MKLWMICLVLISMVVMARADEEESKPIEFLN-CNQPKPPPACLQIIHRRFPRPPLQGDRG 60
          M+ W+ICLVLI M+V+++    E+K ++F + C QP PPP C   I    P  P +  RG
Sbjct: 1  MRSWLICLVLIGMLVVSQDVASETKFLKFPDPCQQPNPPPGCS--IGNAVPANPYR--RG 60

Query: 61 CNAITRCRGG 69
          C+ ITRCRGG
Sbjct: 61 CSKITRCRGG 66

[Close]

BLAST of Cp4.1LG15g01590 vs. ExPASy TrEMBL
Match: A0A1S4DY33 (protein RALF-like 30 OS=Cucumis melo OX=3656 GN=LOC107991083 PE=3 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.44e-09
Identity = 32/70 (45.71%), Postives = 44/70 (62.86%), Query Frame = 0


Query: 1  MKLWMICLVLISMVVMARADEEESKPIEFLN-CNQPKPPPACLQIIHRRFPRPPLQGDRG 60
          MK W+IC  L+SM+VM      ++K ++FL+ C QP PP +C +  H R   P +  DRG
Sbjct: 1  MKSWLICFALLSMLVMGHEVAAKTKFLKFLDPCLQPSPPRSCYK--HERVDSP-IAYDRG 60

Query: 61 CNAITRCRGG 69
          C+ I RCRGG
Sbjct: 61 CSPILRCRGG 67

[Close]

BLAST of Cp4.1LG15g01590 vs. ExPASy TrEMBL
Match: A0A0A0LI94 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G191310 PE=3 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 2.96e-09
Identity = 31/70 (44.29%), Postives = 42/70 (60.00%), Query Frame = 0


Query: 1  MKLWMICLVLISMVVMARADEEESKPIEFLN-CNQPKPPPACLQIIHRRFPRPPLQGDRG 60
          MK W+ICL LI M+V+ +    E+K ++F++ CNQP PPP C          P    +R 
Sbjct: 1  MKSWLICLALIGMLVVGQEVAAETKHLKFIDPCNQPSPPPTCPNRDKVEEANP---YNRD 60

Query: 61 CNAITRCRGG 69
          C+AI RCRGG
Sbjct: 61 CSAINRCRGG 67

[Close]

BLAST of Cp4.1LG15g01590 vs. ExPASy TrEMBL
Match: A0A0A0LZK3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G610770 PE=3 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 5.13e-08
Identity = 31/70 (44.29%), Postives = 40/70 (57.14%), Query Frame = 0


Query: 1   MKLWMICLVLISMVVMARADEEESKPIEFLN-CNQPKPPPACLQIIHRRFPRPPLQGDRG 60
           MK W+IC  L+SM+VM+     E K + F + C QP PP +C +      P P    DRG
Sbjct: 34  MKSWLICFALLSMLVMSHEVAAEGKFLNFSDLCLQPSPPKSCYKDERADSPIP---YDRG 93

Query: 61  CNAITRCRGG 69
           C+ I RCRGG
Sbjct: 94  CSPILRCRGG 100

[Close]

BLAST of Cp4.1LG15g01590 vs. TAIR 10
Match: AT2G19030.1 (ralf-like 11 )

HSP 1 Score: 43.1 bits (100), Expect = 1.2e-04
Identity = 27/71 (38.03%), Postives = 37/71 (52.11%), Query Frame = 0


Query: 1  MKLWMICLVLISMVVMARADEEESKPIEF---LNCNQPKPPPACLQI-IHRRFPRPPLQG 60
          MK W+ICL++I   V+A   E  +  IE+     C  P PPP C      ++ P P  + 
Sbjct: 1  MKAWLICLLVICAAVIAEPVESRNY-IEYGAINKCAGPNPPPGCNPPGAEQKNPTPVNEY 60

Query: 61 DRGCNAITRCR 68
           RGC+ I RCR
Sbjct: 61 SRGCSKIHRCR 70

[Close]

BLAST of Cp4.1LG15g01590 vs. TAIR 10
Match: AT2G19045.1 (RALF-like 13 )

HSP 1 Score: 43.1 bits (100), Expect = 1.2e-04
Identity = 27/71 (38.03%), Postives = 37/71 (52.11%), Query Frame = 0


Query: 1  MKLWMICLVLISMVVMARADEEESKPIEF---LNCNQPKPPPACLQI-IHRRFPRPPLQG 60
          MK W+ICL++I   V+A   E  +  IE+     C  P PPP C      ++ P P  + 
Sbjct: 1  MKAWVICLLVICAAVIAEPVESRNY-IEYGAINKCAGPNPPPGCNPPGAEQKNPNPVNEY 60

Query: 61 DRGCNAITRCR 68
           RGC+ I RCR
Sbjct: 61 SRGCSKIHRCR 70

The following BLAST results are available for this feature:

BLAST of Cp4.1LG15g01590 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG15g01590 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038877580.1	2.21e-11	47.14	protein RALF-like 11 [Benincasa hispida]	[more]
KAE8637268.1	3.73e-10	44.93	hypothetical protein CSA_017684 [Cucumis sativus]	[more]
KGN58523.2	4.22e-10	44.30	hypothetical protein Csa_001790 [Cucumis sativus]	[more]
XP_022947821.1	2.04e-09	47.14	protein RALF-like 10 [Cucurbita moschata]	[more]
XP_016900883.1	2.97e-09	45.71	PREDICTED: protein RALF-like 30 [Cucumis melo]	[more]

BLAST of Cp4.1LG15g01590 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M0X3	1.81e-10	44.93	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G690160 PE=3 SV=1	[more]
A0A6J1G7J2	9.89e-10	47.14	protein RALF-like 10 OS=Cucurbita moschata OX=3662 GN=LOC111451581 PE=3 SV=1	[more]
A0A1S4DY33	1.44e-09	45.71	protein RALF-like 30 OS=Cucumis melo OX=3656 GN=LOC107991083 PE=3 SV=1	[more]
A0A0A0LI94	2.96e-09	44.29	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G191310 PE=3 SV=1	[more]
A0A0A0LZK3	5.13e-08	44.29	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G610770 PE=3 SV=1	[more]

BLAST of Cp4.1LG15g01590 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G19030.1	1.2e-04	38.03	ralf-like 11	[more]
AT2G19045.1	1.2e-04	38.03	RALF-like 13	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34270:SF5	PROTEIN RALF-LIKE 10-RELATED	coord: 1..69
None	No IPR available	PANTHER	PTHR34270	PROTEIN RALF-LIKE 15-RELATED	coord: 1..69

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG15g01590.1	Cp4.1LG15g01590.1	mRNA