Cp4.1LG11g09980 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG11g09980
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Auxin-responsive protein
Location	Cp4.1LG11: 8353843 .. 8355302 (-)
RNA-Seq Expression	Cp4.1LG11g09980
Synteny	Cp4.1LG11g09980

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGAAGATCAAATAAATTTGTAGCGCGTGGTAAACACGCGCCAAGTAGGGAAGTGGGGAAATTATAGCTCCTTTTGCTTTAATCGCCTTCTATAAAATACGTTTGAGTGTTATTTGAGCTTAACAAGCACTTCATTTCTCCTCTGATTCTCTTCTGCACTTTCTGTTTGTTTCCCGAGAAAATAAAACACAACCCATCAGAAAATTCAAGAAACCCATTTCAGAGAAGGAAAAAAAATGGCGTTCGAGAAAGATCTCAACTTGGAAGCCACCGAGCTCCGATTAGGTCTGCCGGGAACTTCGCCTGACGATCAATCTTCTCCGATCAACCGAATCATCTCCAACAAAAGAGCTTTGCCGTCCGACGACCAGAACCCGCCGGAATCCGGCCGGGACGATAACTCCGATCTCACTAAATCCGCCCAAGAAAATCCCCCACCCACCAAGTAAGCACCTCATAATAAAAACTCAAACTTTATCTCTTATTTGAATAGAATTTGACGAAAAGATTTGAACTTTTCAGGGCACAAGTCGTGGGGTGGCCGCCGGTGAGATCGTTCAGAAAGAATTGTTTTCAAGCTAAGAAAAAAGATGAGGTGGCGGCGGCGGCGACGGCGGCCGGAGGGATGTTCATTAAAGTAAGCATGGATGGAGCTCCTTTTCTAAGGAAAGTTGATCTCAAAACCTATCAAGGATATCCTGAGCTTCTTCAAGCTTTAGAGAACATGTTCAAATTCTCTCTTGGTAATTTTCTTAAACATGGATCTCGACATCATAATCGCTTTAGAATGAAAATTTATTCAACTTTCGTCGTGTTCTTGCAGGTAAGTTTTGCGAGAGAGAAGGGTATAACGGGTCGGAATTTGTTCCAACTTATGAAGATAAAGATGGCGATTGGATGCTTGTCGGTGACGTTCCCTGGGAGTAAGTTTCAATCTCTACCTAAAATAACAAGCATGCAACTTTTTTCTAGTAGTTTCATACATATTTGTCACGACCTAAAAAAATCTTATCAACCCAATTCAACTGATACATCTGAGTTTGATTATGAACTTATTTTGATTGAATTAGCCGATAAATTTTCTTAAAATTAGATTGGATTACTGAACCAACCAGAATTTATCGTTTTTTAGATTCAACCCACGAACAATTTTATTATAACGGTGACGTTCGATAATTTTTTTCGTTGATCGTGAGATTCGGTTTAGGTTTAGGTTTTGGTTCGAGTAACTAACGGTGGGTTTATTCGAAAATTTGTAGAATGTTCATGGGGTCATGCAAGAAGCTTAGGATCATGAAGGGATCAGAAGCCAAAGGGTTGAGCTGTGGATCAGTGTGAAGAACAAAAAAGGAAGAAGAAAAGGGATCAGAGGGCACCCAAATGGCTCTCTTTTTTATGATCATCGGAAAAGCTGCCGAAGTTCATCACAGCCGCCGTGGATTCGCCGGCGACAGCTCCGA

mRNA sequence

TTGAAGATCAAATAAATTTGTAGCGCGTGGTAAACACGCGCCAAGTAGGGAAGTGGGGAAATTATAGCTCCTTTTGCTTTAATCGCCTTCTATAAAATACGTTTGAGTGTTATTTGAGCTTAACAAGCACTTCATTTCTCCTCTGATTCTCTTCTGCACTTTCTGTTTGTTTCCCGAGAAAATAAAACACAACCCATCAGAAAATTCAAGAAACCCATTTCAGAGAAGGAAAAAAAATGGCGTTCGAGAAAGATCTCAACTTGGAAGCCACCGAGCTCCGATTAGGTCTGCCGGGAACTTCGCCTGACGATCAATCTTCTCCGATCAACCGAATCATCTCCAACAAAAGAGCTTTGCCGTCCGACGACCAGAACCCGCCGGAATCCGGCCGGGACGATAACTCCGATCTCACTAAATCCGCCCAAGAAAATCCCCCACCCACCAACTGCCGAAGTTCATCACAGCCGCCGTGGATTCGCCGGCGACAGCTCCGA

Coding sequence (CDS)

ATGGCGTTCGAGAAAGATCTCAACTTGGAAGCCACCGAGCTCCGATTAGGTCTGCCGGGAACTTCGCCTGACGATCAATCTTCTCCGATCAACCGAATCATCTCCAACAAAAGAGCTTTGCCGTCCGACGACCAGAACCCGCCGGAATCCGGCCGGGACGATAACTCCGATCTCACTAAATCCGCCCAAGAAAATCCCCCACCCACCAACTGCCGAAGTTCATCACAGCCGCCGTGGATTCGCCGGCGACAGCTCCGA

Protein sequence

MAFEKDLNLEATELRLGLPGTSPDDQSSPINRIISNKRALPSDDQNPPESGRDDNSDLTKSAQENPPPTNCRSSSQPPWIRRRQLR

Homology

[Close]

BLAST of Cp4.1LG11g09980 vs. NCBI nr
Match: XP_023547310.1 (auxin-induced protein 22D-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 137 bits (345), Expect = 1.22e-38
Identity = 71/78 (91.03%), Postives = 72/78 (92.31%), Query Frame = 0


Query: 1  MAFEKDLNLEATELRLGLPGTSPDDQSSPINRIISNKRALPSDDQNPPESGRDDNSDLTK 60
          MAFEKDLNLEATELRLGLPGTSPDDQSSPINRIISNKRALPSDDQNPPESGRDDNSDLTK
Sbjct: 1  MAFEKDLNLEATELRLGLPGTSPDDQSSPINRIISNKRALPSDDQNPPESGRDDNSDLTK 60

Query: 61 SAQENPPPTNCRSSSQPP 78
          SAQENPPPT  +    PP
Sbjct: 61 SAQENPPPTKAQVVGWPP 78

[Close]

BLAST of Cp4.1LG11g09980 vs. NCBI nr
Match: XP_023521172.1 (auxin-induced protein 22D-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 135 bits (340), Expect = 1.21e-37
Identity = 70/78 (89.74%), Postives = 72/78 (92.31%), Query Frame = 0


Query: 1  MAFEKDLNLEATELRLGLPGTSPDDQSSPINRIISNKRALPSDDQNPPESGRDDNSDLTK 60
          MAFEKDLNLEATELRLGLPGTSPDDQSSPINRIISNKRALPSDDQNPPESGRD+NSDLTK
Sbjct: 1  MAFEKDLNLEATELRLGLPGTSPDDQSSPINRIISNKRALPSDDQNPPESGRDNNSDLTK 60

Query: 61 SAQENPPPTNCRSSSQPP 78
          SAQENPPPT  +    PP
Sbjct: 61 SAQENPPPTKAQVVGWPP 78

[Close]

BLAST of Cp4.1LG11g09980 vs. NCBI nr
Match: KAG7030308.1 (Auxin-induced protein 22D, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 132 bits (333), Expect = 1.32e-37
Identity = 69/78 (88.46%), Postives = 70/78 (89.74%), Query Frame = 0


Query: 1  MAFEKDLNLEATELRLGLPGTSPDDQSSPINRIISNKRALPSDDQNPPESGRDDNSDLTK 60
          MAFEKDLNLEATELRLGLPGTSPDDQSSPINRIISNKRALPSDDQNPPESGRD NSDLTK
Sbjct: 1  MAFEKDLNLEATELRLGLPGTSPDDQSSPINRIISNKRALPSDDQNPPESGRDSNSDLTK 60

Query: 61 SAQENPPPTNCRSSSQPP 78
          S QENPPPT  +    PP
Sbjct: 61 SDQENPPPTKAQVVGWPP 78

[Close]

BLAST of Cp4.1LG11g09980 vs. NCBI nr
Match: KAG6599309.1 (Auxin-induced protein 22D, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 132 bits (333), Expect = 7.98e-37
Identity = 69/78 (88.46%), Postives = 70/78 (89.74%), Query Frame = 0


Query: 1  MAFEKDLNLEATELRLGLPGTSPDDQSSPINRIISNKRALPSDDQNPPESGRDDNSDLTK 60
          MAFEKDLNLEATELRLGLPGTSPDDQSSPINRIISNKRALPSDDQNPPESGRD NSDLTK
Sbjct: 1  MAFEKDLNLEATELRLGLPGTSPDDQSSPINRIISNKRALPSDDQNPPESGRDSNSDLTK 60

Query: 61 SAQENPPPTNCRSSSQPP 78
          S QENPPPT  +    PP
Sbjct: 61 SDQENPPPTKAQVVGWPP 78

[Close]

BLAST of Cp4.1LG11g09980 vs. NCBI nr
Match: XP_022946836.1 (auxin-induced protein 22D-like [Cucurbita moschata])

HSP 1 Score: 131 bits (330), Expect = 2.15e-36
Identity = 68/78 (87.18%), Postives = 70/78 (89.74%), Query Frame = 0


Query: 1  MAFEKDLNLEATELRLGLPGTSPDDQSSPINRIISNKRALPSDDQNPPESGRDDNSDLTK 60
          MAF+KDLNLEATELRLGLPGTSPDDQSSPINRIISNKRALPSDDQNPPESGRD NSDLTK
Sbjct: 1  MAFQKDLNLEATELRLGLPGTSPDDQSSPINRIISNKRALPSDDQNPPESGRDSNSDLTK 60

Query: 61 SAQENPPPTNCRSSSQPP 78
          S QENPPPT  +    PP
Sbjct: 61 SDQENPPPTKAQVVGWPP 78

[Close]

BLAST of Cp4.1LG11g09980 vs. ExPASy TrEMBL
Match: A0A6J1G4Q6 (Auxin-responsive protein OS=Cucurbita moschata OX=3662 GN=LOC111450780 PE=3 SV=1)

HSP 1 Score: 131 bits (330), Expect = 1.04e-36
Identity = 68/78 (87.18%), Postives = 70/78 (89.74%), Query Frame = 0


Query: 1  MAFEKDLNLEATELRLGLPGTSPDDQSSPINRIISNKRALPSDDQNPPESGRDDNSDLTK 60
          MAF+KDLNLEATELRLGLPGTSPDDQSSPINRIISNKRALPSDDQNPPESGRD NSDLTK
Sbjct: 1  MAFQKDLNLEATELRLGLPGTSPDDQSSPINRIISNKRALPSDDQNPPESGRDSNSDLTK 60

Query: 61 SAQENPPPTNCRSSSQPP 78
          S QENPPPT  +    PP
Sbjct: 61 SDQENPPPTKAQVVGWPP 78

[Close]

BLAST of Cp4.1LG11g09980 vs. ExPASy TrEMBL
Match: A0A6J1KCY1 (Auxin-responsive protein OS=Cucurbita maxima OX=3661 GN=LOC111493783 PE=3 SV=1)

HSP 1 Score: 128 bits (322), Expect = 1.64e-35
Identity = 68/78 (87.18%), Postives = 70/78 (89.74%), Query Frame = 0


Query: 1  MAFEKDLNLEATELRLGLPGTSPDDQSSPINRIISNKRALPSDDQNPPESGRDDNSDLTK 60
          MAFEKDLNLEATELRLGLPGTSPDDQSS INRIISNKRALPSDDQNP ESGRD+NSDLTK
Sbjct: 1  MAFEKDLNLEATELRLGLPGTSPDDQSSTINRIISNKRALPSDDQNPLESGRDNNSDLTK 60

Query: 61 SAQENPPPTNCRSSSQPP 78
          SAQENPPPT  +    PP
Sbjct: 61 SAQENPPPTKAQVVGWPP 78

[Close]

BLAST of Cp4.1LG11g09980 vs. ExPASy TrEMBL
Match: A0A5A7V9G4 (Auxin-responsive protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold456G001460 PE=3 SV=1)

HSP 1 Score: 105 bits (262), Expect = 1.82e-26
Identity = 60/79 (75.95%), Postives = 63/79 (79.75%), Query Frame = 0


Query: 1  MAFEKDLNLEATELRLGLPGTSPDDQS-SPINRIISNKRALPSDDQNPPESGRDDNSDLT 60
          MAFEKDLNLEATELRLGLPGTSPDDQS SPINR  SNKRALPSDDQNP ES R+ NSD +
Sbjct: 1  MAFEKDLNLEATELRLGLPGTSPDDQSNSPINRTNSNKRALPSDDQNPLESRREINSDPS 60

Query: 61 KSAQENPPPTNCRSSSQPP 78
          K  QEN PPT  +    PP
Sbjct: 61 KCTQENTPPTKAQVVGWPP 79

[Close]

BLAST of Cp4.1LG11g09980 vs. ExPASy TrEMBL
Match: A0A1S3C3E2 (Auxin-responsive protein OS=Cucumis melo OX=3656 GN=LOC103496036 PE=3 SV=1)

HSP 1 Score: 105 bits (262), Expect = 1.82e-26
Identity = 60/79 (75.95%), Postives = 63/79 (79.75%), Query Frame = 0


Query: 1  MAFEKDLNLEATELRLGLPGTSPDDQS-SPINRIISNKRALPSDDQNPPESGRDDNSDLT 60
          MAFEKDLNLEATELRLGLPGTSPDDQS SPINR  SNKRALPSDDQNP ES R+ NSD +
Sbjct: 1  MAFEKDLNLEATELRLGLPGTSPDDQSNSPINRTNSNKRALPSDDQNPLESRREINSDPS 60

Query: 61 KSAQENPPPTNCRSSSQPP 78
          K  QEN PPT  +    PP
Sbjct: 61 KCTQENTPPTKAQVVGWPP 79

[Close]

BLAST of Cp4.1LG11g09980 vs. ExPASy TrEMBL
Match: A0A0A0LID4 (Auxin-responsive protein OS=Cucumis sativus OX=3659 GN=Csa_2G011420 PE=3 SV=1)

HSP 1 Score: 104 bits (259), Expect = 5.03e-26
Identity = 59/79 (74.68%), Postives = 63/79 (79.75%), Query Frame = 0


Query: 1  MAFEKDLNLEATELRLGLPGTSPDDQS-SPINRIISNKRALPSDDQNPPESGRDDNSDLT 60
          MAFEKDLNLEATELRLGLPGTSPDDQS SPINR  SNKRALPSDDQN  ES R+ NSD +
Sbjct: 1  MAFEKDLNLEATELRLGLPGTSPDDQSNSPINRTNSNKRALPSDDQNSSESRREINSDTS 60

Query: 61 KSAQENPPPTNCRSSSQPP 78
          K +QEN PPT  +    PP
Sbjct: 61 KCSQENTPPTKAQVVGWPP 79

The following BLAST results are available for this feature:

BLAST of Cp4.1LG11g09980 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG11g09980 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023547310.1	1.22e-38	91.03	auxin-induced protein 22D-like [Cucurbita pepo subsp. pepo]	[more]
XP_023521172.1	1.21e-37	89.74	auxin-induced protein 22D-like [Cucurbita pepo subsp. pepo]	[more]
KAG7030308.1	1.32e-37	88.46	Auxin-induced protein 22D, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6599309.1	7.98e-37	88.46	Auxin-induced protein 22D, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022946836.1	2.15e-36	87.18	auxin-induced protein 22D-like [Cucurbita moschata]	[more]

BLAST of Cp4.1LG11g09980 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G4Q6	1.04e-36	87.18	Auxin-responsive protein OS=Cucurbita moschata OX=3662 GN=LOC111450780 PE=3 SV=1	[more]
A0A6J1KCY1	1.64e-35	87.18	Auxin-responsive protein OS=Cucurbita maxima OX=3661 GN=LOC111493783 PE=3 SV=1	[more]
A0A5A7V9G4	1.82e-26	75.95	Auxin-responsive protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A1S3C3E2	1.82e-26	75.95	Auxin-responsive protein OS=Cucumis melo OX=3656 GN=LOC103496036 PE=3 SV=1	[more]
A0A0A0LID4	5.03e-26	74.68	Auxin-responsive protein OS=Cucumis sativus OX=3659 GN=Csa_2G011420 PE=3 SV=1	[more]

BLAST of Cp4.1LG11g09980 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 21..43
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 60..86
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..86
None	No IPR available	PANTHER	PTHR31734:SF167	AUXIN-RESPONSIVE PROTEIN	coord: 1..78
IPR003311	AUX/IAA protein	PANTHER	PTHR31734	AUXIN-RESPONSIVE PROTEIN IAA17	coord: 1..78

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG11g09980.1	Cp4.1LG11g09980.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009734	auxin-activated signaling pathway
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus