Cp4.1LG11g05220 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG11g05220
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	dehydration-responsive element-binding protein 3-like
Location	Cp4.1LG11: 3056639 .. 3056911 (-)
RNA-Seq Expression	Cp4.1LG11g05220
Synteny	Cp4.1LG11g05220

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATCATTTCTCCTCTACTCATACTAATAACAACAATTCCTCCTCCTCCTCCTCCTCCTCCGATGCCACCGATGAGCTCACGGAAATCGTCCAGCTACCGACTCTCGGAACGAGTTACGACGGCGGATTCGGTGGTGAGTTTGTGTTTTTTGACTCGGGGCAGGAATTGGAATCTGGGTGTTGGATGTACGCGCCGCCATGGGTGCAGAGCTTGGGGGATTGTGATAATGATGATTATGGTAAGTTCGAAGGATTGCTGTGGGATTATTGA

mRNA sequence

ATGCATCATTTCTCCTCTACTCATACTAATAACAACAATTCCTCCTCCTCCTCCTCCTCCTCCGATGCCACCGATGAGCTCACGGAAATCGTCCAGCTACCGACTCTCGGAACGAGTTACGACGGCGGATTCGGTGGTGAGTTTGTGTTTTTTGACTCGGGGCAGGAATTGGAATCTGGGTGTTGGATGTACGCGCCGCCATGGGTGCAGAGCTTGGGGGATTGTGATAATGATGATTATGGTAAGTTCGAAGGATTGCTGTGGGATTATTGA

Coding sequence (CDS)

ATGCATCATTTCTCCTCTACTCATACTAATAACAACAATTCCTCCTCCTCCTCCTCCTCCTCCGATGCCACCGATGAGCTCACGGAAATCGTCCAGCTACCGACTCTCGGAACGAGTTACGACGGCGGATTCGGTGGTGAGTTTGTGTTTTTTGACTCGGGGCAGGAATTGGAATCTGGGTGTTGGATGTACGCGCCGCCATGGGTGCAGAGCTTGGGGGATTGTGATAATGATGATTATGGTAAGTTCGAAGGATTGCTGTGGGATTATTGA

Protein sequence

MHHFSSTHTNNNNSSSSSSSSDATDELTEIVQLPTLGTSYDGGFGGEFVFFDSGQELESGCWMYAPPWVQSLGDCDNDDYGKFEGLLWDY

Homology

[Close]

BLAST of Cp4.1LG11g05220 vs. ExPASy Swiss-Prot
Match: Q9LYD3 (Dehydration-responsive element-binding protein 3 OS=Arabidopsis thaliana OX=3702 GN=DREB3 PE=2 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 1.0e-04
Identity = 40/105 (38.10%), Postives = 54/105 (51.43%), Query Frame = 0


Query: 4   FSSTHTNNNNSSSSSS----------SSDATDELTEIVQLPTLGTSYD---GGFGGEFVF 63
           FSS+ +++++ SS+SS          S   ++EL EIV+LP+LG SYD      G EFVF
Sbjct: 140 FSSSTSSSSSLSSTSSLESLVLVMDLSRTESEELGEIVELPSLGASYDVDSANLGNEFVF 199

Query: 64  FDSGQELESGCWMYAPPWVQSLGDCDNDDYGK------FEGLLWD 90
           +DS         +Y PPW QS      D+YG         GL WD
Sbjct: 200 YDSVDYC-----LYPPPWGQS----SEDNYGHGISPNFGHGLSWD 235

[Close]

BLAST of Cp4.1LG11g05220 vs. ExPASy Swiss-Prot
Match: Q39127 (Ethylene-responsive transcription factor TINY OS=Arabidopsis thaliana OX=3702 GN=TINY PE=2 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 1.0e-04
Identity = 30/67 (44.78%), Postives = 43/67 (64.18%), Query Frame = 0


Query: 4   FSSTHTNNNNSSSSSSSSDATDELTEIVQLPTLGTSYDG--GFGGEFVFFDSGQELESGC 63
           FSS+ ++++  S  SSS+  ++EL EIV+LP+LG+SYDG    G EF+F DS     +  
Sbjct: 133 FSSSQSSSSLESLVSSSATGSEELGEIVELPSLGSSYDGLTQLGNEFIFSDS-----ADL 192

Query: 64  WMYAPPW 69
           W Y P W
Sbjct: 193 WPYPPQW 194

[Close]

BLAST of Cp4.1LG11g05220 vs. NCBI nr
Match: XP_023546365.1 (ethylene-responsive transcription factor TINY-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 191 bits (484), Expect = 1.25e-58
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0


Query: 1   MHHFSSTHTNNNNSSSSSSSSDATDELTEIVQLPTLGTSYDGGFGGEFVFFDSGQELESG 60
           MHHFSSTHTNNNNSSSSSSSSDATDELTEIVQLPTLGTSYDGGFGGEFVFFDSGQELESG
Sbjct: 192 MHHFSSTHTNNNNSSSSSSSSDATDELTEIVQLPTLGTSYDGGFGGEFVFFDSGQELESG 251

Query: 61  CWMYAPPWVQSLGDCDNDDYGKFEGLLWDY 90
           CWMYAPPWVQSLGDCDNDDYGKFEGLLWDY
Sbjct: 252 CWMYAPPWVQSLGDCDNDDYGKFEGLLWDY 281

[Close]

BLAST of Cp4.1LG11g05220 vs. NCBI nr
Match: XP_022962316.1 (dehydration-responsive element-binding protein 3-like [Cucurbita moschata])

HSP 1 Score: 173 bits (439), Expect = 9.49e-53
Identity = 86/93 (92.47%), Postives = 87/93 (93.55%), Query Frame = 0


Query: 1   MHHFSSTHTNNNNSSSSSSSSDATDELTEIVQLPTLGTSYDGG---FGGEFVFFDSGQEL 60
           MHHFSSTHTNNNNSSSSSSS DATDELTEIVQLP+LGTSYDGG   FGGEFVFFDSGQEL
Sbjct: 117 MHHFSSTHTNNNNSSSSSSS-DATDELTEIVQLPSLGTSYDGGDGGFGGEFVFFDSGQEL 176

Query: 61  ESGCWMYAPPWVQSLGDCDNDDYGKFEGLLWDY 90
           ESGCWMY PPWVQSL DCDNDDYGKFEGLLWDY
Sbjct: 177 ESGCWMYTPPWVQSLEDCDNDDYGKFEGLLWDY 208

[Close]

BLAST of Cp4.1LG11g05220 vs. NCBI nr
Match: KAG7029718.1 (Dehydration-responsive element-binding protein 3, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 170 bits (431), Expect = 1.81e-51
Identity = 86/97 (88.66%), Postives = 87/97 (89.69%), Query Frame = 0


Query: 1   MHHFSSTHTNNNNSSSSSSSS----DATDELTEIVQLPTLGTSYDGG---FGGEFVFFDS 60
           M HFSSTHTNNNNSSSSSSSS    DATDELTEIVQLP+LGTSYDGG   FGGEFVFFDS
Sbjct: 117 MQHFSSTHTNNNNSSSSSSSSSSSSDATDELTEIVQLPSLGTSYDGGDGGFGGEFVFFDS 176

Query: 61  GQELESGCWMYAPPWVQSLGDCDNDDYGKFEGLLWDY 90
           GQELESGCWMY PPWVQSL DCDNDDYGKFEGLLWDY
Sbjct: 177 GQELESGCWMYTPPWVQSLEDCDNDDYGKFEGLLWDY 213

[Close]

BLAST of Cp4.1LG11g05220 vs. NCBI nr
Match: XP_022996591.1 (dehydration-responsive element-binding protein 3-like isoform X3 [Cucurbita maxima])

HSP 1 Score: 169 bits (429), Expect = 2.86e-51
Identity = 81/90 (90.00%), Postives = 85/90 (94.44%), Query Frame = 0


Query: 1   MHHFSSTHTNNNNSSSSSSSSDATDELTEIVQLPTLGTSYDGGFGGEFVFFDSGQELESG 60
           M+HFSST TNNNNSSSSSSSSDAT+ELTEIVQLP+LGTS+DGG GGE VFFDSGQELESG
Sbjct: 116 MNHFSSTDTNNNNSSSSSSSSDATEELTEIVQLPSLGTSFDGGGGGELVFFDSGQELESG 175

Query: 61  CWMYAPPWVQSLGDCDNDDYGKFEGLLWDY 90
           CWMY PPWVQSL DCDNDDYGKFEGLLWDY
Sbjct: 176 CWMYTPPWVQSLEDCDNDDYGKFEGLLWDY 205

[Close]

BLAST of Cp4.1LG11g05220 vs. NCBI nr
Match: KAG6598779.1 (Dehydration-responsive element-binding protein 3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 169 bits (427), Expect = 8.26e-51
Identity = 86/101 (85.15%), Postives = 87/101 (86.14%), Query Frame = 0


Query: 1   MHHFSSTHTNNNNSSSSSSSS--------DATDELTEIVQLPTLGTSYDGG---FGGEFV 60
           M HFSSTHTNNNNSSSSSSSS        DATDELTEIVQLP+LGTSYDGG   FGGEFV
Sbjct: 117 MQHFSSTHTNNNNSSSSSSSSSSSSSSSSDATDELTEIVQLPSLGTSYDGGDGGFGGEFV 176

Query: 61  FFDSGQELESGCWMYAPPWVQSLGDCDNDDYGKFEGLLWDY 90
           FFDSGQELESGCWMY PPWVQSL DCDNDDYGKFEGLLWDY
Sbjct: 177 FFDSGQELESGCWMYTPPWVQSLEDCDNDDYGKFEGLLWDY 217

[Close]

BLAST of Cp4.1LG11g05220 vs. ExPASy TrEMBL
Match: A0A6J1HCS5 (dehydration-responsive element-binding protein 3-like OS=Cucurbita moschata OX=3662 GN=LOC111462803 PE=4 SV=1)

HSP 1 Score: 173 bits (439), Expect = 4.60e-53
Identity = 86/93 (92.47%), Postives = 87/93 (93.55%), Query Frame = 0


Query: 1   MHHFSSTHTNNNNSSSSSSSSDATDELTEIVQLPTLGTSYDGG---FGGEFVFFDSGQEL 60
           MHHFSSTHTNNNNSSSSSSS DATDELTEIVQLP+LGTSYDGG   FGGEFVFFDSGQEL
Sbjct: 117 MHHFSSTHTNNNNSSSSSSS-DATDELTEIVQLPSLGTSYDGGDGGFGGEFVFFDSGQEL 176

Query: 61  ESGCWMYAPPWVQSLGDCDNDDYGKFEGLLWDY 90
           ESGCWMY PPWVQSL DCDNDDYGKFEGLLWDY
Sbjct: 177 ESGCWMYTPPWVQSLEDCDNDDYGKFEGLLWDY 208

[Close]

BLAST of Cp4.1LG11g05220 vs. ExPASy TrEMBL
Match: A0A6J1K578 (dehydration-responsive element-binding protein 3-like isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111491786 PE=4 SV=1)

HSP 1 Score: 169 bits (429), Expect = 1.38e-51
Identity = 81/90 (90.00%), Postives = 85/90 (94.44%), Query Frame = 0


Query: 1   MHHFSSTHTNNNNSSSSSSSSDATDELTEIVQLPTLGTSYDGGFGGEFVFFDSGQELESG 60
           M+HFSST TNNNNSSSSSSSSDAT+ELTEIVQLP+LGTS+DGG GGE VFFDSGQELESG
Sbjct: 116 MNHFSSTDTNNNNSSSSSSSSDATEELTEIVQLPSLGTSFDGGGGGELVFFDSGQELESG 175

Query: 61  CWMYAPPWVQSLGDCDNDDYGKFEGLLWDY 90
           CWMY PPWVQSL DCDNDDYGKFEGLLWDY
Sbjct: 176 CWMYTPPWVQSLEDCDNDDYGKFEGLLWDY 205

[Close]

BLAST of Cp4.1LG11g05220 vs. ExPASy TrEMBL
Match: A0A6J1K2D0 (dehydration-responsive element-binding protein 3-like isoform X4 OS=Cucurbita maxima OX=3661 GN=LOC111491786 PE=4 SV=1)

HSP 1 Score: 164 bits (414), Expect = 2.55e-49
Identity = 80/90 (88.89%), Postives = 84/90 (93.33%), Query Frame = 0


Query: 1   MHHFSSTHTNNNNSSSSSSSSDATDELTEIVQLPTLGTSYDGGFGGEFVFFDSGQELESG 60
           M+HFSST TNNNNSSSSSSS DAT+ELTEIVQLP+LGTS+DGG GGE VFFDSGQELESG
Sbjct: 116 MNHFSSTDTNNNNSSSSSSS-DATEELTEIVQLPSLGTSFDGGGGGELVFFDSGQELESG 175

Query: 61  CWMYAPPWVQSLGDCDNDDYGKFEGLLWDY 90
           CWMY PPWVQSL DCDNDDYGKFEGLLWDY
Sbjct: 176 CWMYTPPWVQSLEDCDNDDYGKFEGLLWDY 204

[Close]

BLAST of Cp4.1LG11g05220 vs. ExPASy TrEMBL
Match: A0A6J1K785 (dehydration-responsive element-binding protein 3-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111491786 PE=4 SV=1)

HSP 1 Score: 163 bits (413), Expect = 4.32e-49
Identity = 81/95 (85.26%), Postives = 85/95 (89.47%), Query Frame = 0


Query: 1   MHHFSSTHTNNNNSSSSSSSS-----DATDELTEIVQLPTLGTSYDGGFGGEFVFFDSGQ 60
           M+HFSST TNNNNSSSSSSSS     DAT+ELTEIVQLP+LGTS+DGG GGE VFFDSGQ
Sbjct: 116 MNHFSSTDTNNNNSSSSSSSSSSSSSDATEELTEIVQLPSLGTSFDGGGGGELVFFDSGQ 175

Query: 61  ELESGCWMYAPPWVQSLGDCDNDDYGKFEGLLWDY 90
           ELESGCWMY PPWVQSL DCDNDDYGKFEGLLWDY
Sbjct: 176 ELESGCWMYTPPWVQSLEDCDNDDYGKFEGLLWDY 210

[Close]

BLAST of Cp4.1LG11g05220 vs. ExPASy TrEMBL
Match: A0A6J1K958 (dehydration-responsive element-binding protein 3-like isoform X6 OS=Cucurbita maxima OX=3661 GN=LOC111491786 PE=4 SV=1)

HSP 1 Score: 162 bits (410), Expect = 1.00e-48
Identity = 79/90 (87.78%), Postives = 83/90 (92.22%), Query Frame = 0


Query: 1   MHHFSSTHTNNNNSSSSSSSSDATDELTEIVQLPTLGTSYDGGFGGEFVFFDSGQELESG 60
           M+HFSST TNNNNSSSSSS  DAT+ELTEIVQLP+LGTS+DGG GGE VFFDSGQELESG
Sbjct: 116 MNHFSSTDTNNNNSSSSSS--DATEELTEIVQLPSLGTSFDGGGGGELVFFDSGQELESG 175

Query: 61  CWMYAPPWVQSLGDCDNDDYGKFEGLLWDY 90
           CWMY PPWVQSL DCDNDDYGKFEGLLWDY
Sbjct: 176 CWMYTPPWVQSLEDCDNDDYGKFEGLLWDY 203

[Close]

BLAST of Cp4.1LG11g05220 vs. TAIR 10
Match: AT5G11590.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 47.4 bits (111), Expect = 7.2e-06
Identity = 40/105 (38.10%), Postives = 54/105 (51.43%), Query Frame = 0


Query: 4   FSSTHTNNNNSSSSSS----------SSDATDELTEIVQLPTLGTSYD---GGFGGEFVF 63
           FSS+ +++++ SS+SS          S   ++EL EIV+LP+LG SYD      G EFVF
Sbjct: 140 FSSSTSSSSSLSSTSSLESLVLVMDLSRTESEELGEIVELPSLGASYDVDSANLGNEFVF 199

Query: 64  FDSGQELESGCWMYAPPWVQSLGDCDNDDYGK------FEGLLWD 90
           +DS         +Y PPW QS      D+YG         GL WD
Sbjct: 200 YDSVDYC-----LYPPPWGQS----SEDNYGHGISPNFGHGLSWD 235

[Close]

BLAST of Cp4.1LG11g05220 vs. TAIR 10
Match: AT5G25810.1 (Integrase-type DNA-binding superfamily protein )

HSP 1 Score: 47.4 bits (111), Expect = 7.2e-06
Identity = 30/67 (44.78%), Postives = 43/67 (64.18%), Query Frame = 0


Query: 4   FSSTHTNNNNSSSSSSSSDATDELTEIVQLPTLGTSYDG--GFGGEFVFFDSGQELESGC 63
           FSS+ ++++  S  SSS+  ++EL EIV+LP+LG+SYDG    G EF+F DS     +  
Sbjct: 133 FSSSQSSSSLESLVSSSATGSEELGEIVELPSLGSSYDGLTQLGNEFIFSDS-----ADL 192

Query: 64  WMYAPPW 69
           W Y P W
Sbjct: 193 WPYPPQW 194

The following BLAST results are available for this feature:

BLAST of Cp4.1LG11g05220 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LYD3	1.0e-04	38.10	Dehydration-responsive element-binding protein 3 OS=Arabidopsis thaliana OX=3702...	[more]
Q39127	1.0e-04	44.78	Ethylene-responsive transcription factor TINY OS=Arabidopsis thaliana OX=3702 GN...	[more]

BLAST of Cp4.1LG11g05220 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023546365.1	1.25e-58	100.00	ethylene-responsive transcription factor TINY-like [Cucurbita pepo subsp. pepo]	[more]
XP_022962316.1	9.49e-53	92.47	dehydration-responsive element-binding protein 3-like [Cucurbita moschata]	[more]
KAG7029718.1	1.81e-51	88.66	Dehydration-responsive element-binding protein 3, partial [Cucurbita argyrosperm...	[more]
XP_022996591.1	2.86e-51	90.00	dehydration-responsive element-binding protein 3-like isoform X3 [Cucurbita maxi...	[more]
KAG6598779.1	8.26e-51	85.15	Dehydration-responsive element-binding protein 3, partial [Cucurbita argyrosperm...	[more]

BLAST of Cp4.1LG11g05220 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HCS5	4.60e-53	92.47	dehydration-responsive element-binding protein 3-like OS=Cucurbita moschata OX=3...	[more]
A0A6J1K578	1.38e-51	90.00	dehydration-responsive element-binding protein 3-like isoform X3 OS=Cucurbita ma...	[more]
A0A6J1K2D0	2.55e-49	88.89	dehydration-responsive element-binding protein 3-like isoform X4 OS=Cucurbita ma...	[more]
A0A6J1K785	4.32e-49	85.26	dehydration-responsive element-binding protein 3-like isoform X2 OS=Cucurbita ma...	[more]
A0A6J1K958	1.00e-48	87.78	dehydration-responsive element-binding protein 3-like isoform X6 OS=Cucurbita ma...	[more]

BLAST of Cp4.1LG11g05220 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G11590.1	7.2e-06	38.10	Integrase-type DNA-binding superfamily protein	[more]
AT5G25810.1	7.2e-06	44.78	Integrase-type DNA-binding superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..27

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG11g05220.1	Cp4.1LG11g05220.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	DNA-binding transcription factor activity