Cp4.1LG11g00260 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG11g00260
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Glutaredoxin
Location	Cp4.1LG11: 393014 .. 394195 (+)
RNA-Seq Expression	Cp4.1LG11g00260
Synteny	Cp4.1LG11g00260

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACTTGTAATTTAATATATTATTATTCGTAAAATATTCACGCTTATAATAAGTTTAGAATAACTTTTCAGAATAATTAAATGAAAAAAAGAAAAAGAAAACACTAATAAATGACGTAAGCCACCCACTCACTGCTAAAATAAAAAGAGTTACAACGACCGAACAAGTCCCTTGCCTCTTCGCAAATTTAACAATTCCCCTTCCGCTATATCTCTCTCCGCCGTCTCTCCCAATTCTCCGGCGATGAACCTATGTGCAAACGACGTTGTATCCTCCGAACTTCCTCCTTCTCCGACCTCCTCCTCCTCCTTATCCATCGACGTCGATGAGTCGTCTGAAGCTCGGATCCGGCGGTTGATTACAGAGCATCCGGTGATCATATTCAGCCGCTCCTCTTGCAGCATGTGCCACGTCATGAAGACTCTCCTCGCCATCATCGGCGTCCATCCTACAGTCATCGAGCTTAATGATCACGACGAAATCGCCGCCGTTCCTTCTTCGTCTTTTGTTCGGGATAGTTCGGCGCCGGCGGTTTTCATCGGCGGGGCTAGCTTCGGCGGCTTGGAGACTCTGGTCGCTCTCCATCTTAGCGGCCATCTCGTTCCTAAACTTATCGAAGTTGGAGCTCTCACGGTATGAACCCTTAGATTGGGAATTTCGTTTTAAATTCTCTTTAAAAAAAATATTTAAAATGATTTTTTGTTCTAAAATTTATGTTAGTTTTTCAAATTCTAAGAAAAATATAATTTATTTGATTATATCATTTCTGAAAGTAAAATGAAATTAAAATTTGTACACTTAAACGCTGCAGGTGGGACACGTGCAGTGCTAAAAGTGGAGAATCAGGAATGATGGTCATGCAGATGCGCTACACATGATTTCTGCCTCTGTCCAATTGGTGGGGTACTCTTGTAATTATTGGCAAATTCTCTGGTCGCCACCGTATAACCTGTGGGTTTCGTCGTAGACTAAATATTCTCTTATTCCTCCNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGTTAGTTTTGGTTTTATTATTACTTTTATCTCTTTTTTGTTTGTAATATGATAATATCTTAATAATTATTAAATATAAAAATTAAAAAAAAATATAATCTCAGGCTTCATTTACAATTATTGAAAAAATATAAATAAATATTGTTTT

mRNA sequence

ACTTGTAATTTAATATATTATTATTCGTAAAATATTCACGCTTATAATAAGTTTAGAATAACTTTTCAGAATAATTAAATGAAAAAAAGAAAAAGAAAACACTAATAAATGACGTAAGCCACCCACTCACTGCTAAAATAAAAAGAGTTACAACGACCGAACAAGTCCCTTGCCTCTTCGCAAATTTAACAATTCCCCTTCCGCTATATCTCTCTCCGCCGTCTCTCCCAATTCTCCGGCGATGAACCTATGTGCAAACGACGTTGTATCCTCCGAACTTCCTCCTTCTCCGACCTCCTCCTCCTCCTTATCCATCGACGTCGATGAGTCGTCTGAAGCTCGGATCCGGCGGTTGATTACAGAGCATCCGGTGATCATATTCAGCCGCTCCTCTTGCAGCATGTGCCACGTCATGAAGACTCTCCTCGCCATCATCGGCGTCCATCCTACAGTCATCGAGCTTAATGATCACGACGAAATCGCCGCCGTTCCTTCTTCGTCTTTTGTTCGGGATAGTTCGGCGCCGGCGGTTTTCATCGGCGGGGCTAGCTTCGGCGGCTTGGAGACTCTGGTCGCTCTCCATCTTAGCGGCCATCTCGTTCCTAAACTTATCGAAGTTGGAGCTCTCACGGTGGGACACGTGCAGTGCTAAAAGTGGAGAATCAGGAATGATGGTCATGCAGATGCGCTACACATGATTTCTGCCTCTGTCCAATTGGTGGGGTACTCTTGTAATTATTGGCAAATTCTCTGGTCGCCACCGTATAACCTGTGGGTTTCGTCGTAGACTAAATATTCTCTTATTCCTCCNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGTTAGTTTTGGTTTTATTATTACTTTTATCTCTTTTTTGTTTGTAATATGATAATATCTTAATAATTATTAAATATAAAAATTAAAAAAAAATATAATCTCAGGCTTCATTTACAATTATTGAAAAAATATAAATAAATATTGTTTT

Coding sequence (CDS)

ATGAACCTATGTGCAAACGACGTTGTATCCTCCGAACTTCCTCCTTCTCCGACCTCCTCCTCCTCCTTATCCATCGACGTCGATGAGTCGTCTGAAGCTCGGATCCGGCGGTTGATTACAGAGCATCCGGTGATCATATTCAGCCGCTCCTCTTGCAGCATGTGCCACGTCATGAAGACTCTCCTCGCCATCATCGGCGTCCATCCTACAGTCATCGAGCTTAATGATCACGACGAAATCGCCGCCGTTCCTTCTTCGTCTTTTGTTCGGGATAGTTCGGCGCCGGCGGTTTTCATCGGCGGGGCTAGCTTCGGCGGCTTGGAGACTCTGGTCGCTCTCCATCTTAGCGGCCATCTCGTTCCTAAACTTATCGAAGTTGGAGCTCTCACGGTGGGACACGTGCAGTGCTAA

Protein sequence

MNLCANDVVSSELPPSPTSSSSLSIDVDESSEARIRRLITEHPVIIFSRSSCSMCHVMKTLLAIIGVHPTVIELNDHDEIAAVPSSSFVRDSSAPAVFIGGASFGGLETLVALHLSGHLVPKLIEVGALTVGHVQC

Homology

[Close]

BLAST of Cp4.1LG11g00260 vs. ExPASy Swiss-Prot
Match: Q8L9S3 (Glutaredoxin-C6 OS=Arabidopsis thaliana OX=3702 GN=GRXC6 PE=2 SV=2)

HSP 1 Score: 148.7 bits (374), Expect = 4.9e-35
Identity = 88/135 (65.19%), Postives = 105/135 (77.78%), Query Frame = 0


Query: 5   ANDVVSSEL-PPSPTSSSSLSIDVDESSEARIRRLITEHPVIIFSRSSCSMCHVMKTLLA 64
           +NDVV  +L PPS TSS+SLSID +ES+EA+IRRLI+EHPVIIFSRSSC MCHVMK LLA
Sbjct: 11  SNDVVRLDLTPPSQTSSTSLSIDEEESTEAKIRRLISEHPVIIFSRSSCCMCHVMKRLLA 70

Query: 65  IIGVHPTVIELNDHDEIAAVPSSSFVRDSSA-------PAVFIGGASFGGLETLVALHLS 124
            IGV PTVIEL+DH E++++P++     S         PAVFIG    GGLE+LVALHLS
Sbjct: 71  TIGVIPTVIELDDH-EVSSLPTALQDEYSGGVSVVGPPPAVFIGRECVGGLESLVALHLS 130

Query: 125 GHLVPKLIEVGALTV 132
           G LVPKL++VGAL V
Sbjct: 131 GQLVPKLVQVGALWV 144

[Close]

BLAST of Cp4.1LG11g00260 vs. ExPASy Swiss-Prot
Match: Q29PZ1 (Glutaredoxin-C10 OS=Arabidopsis thaliana OX=3702 GN=GRXC10 PE=2 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 2.3e-29
Identity = 77/144 (53.47%), Postives = 101/144 (70.14%), Query Frame = 0


Query: 4   CANDVVSSEL-----------PPSP------TSSSSLSIDVDESSEARIRRLITEHPVII 63
           C+ND V+ +L           PP+P      T+S+SLS D +E+SE++I RLI+EHPVII
Sbjct: 10  CSNDAVTLDLTVHPPPPPPLPPPAPSTVSSSTASTSLSFDEEETSESKIGRLISEHPVII 69

Query: 64  FSR-SSCSMCHVMKTLLAIIGVHPTVIELNDHDEIAAVPSSSFVRDSSAPAVFIGGASFG 123
           F+R SSC MCHVMK LL+ +GVHPTVIE++D  EIA      ++   +AP +FIGG   G
Sbjct: 70  FTRFSSCCMCHVMKKLLSTVGVHPTVIEIDD-GEIA------YLAVEAAPVLFIGGTCVG 129

Query: 124 GLETLVALHLSGHLVPKLIEVGAL 130
           G E+LVALHLSG L+P+L+EVGAL
Sbjct: 130 GFESLVALHLSGQLIPRLVEVGAL 146

[Close]

BLAST of Cp4.1LG11g00260 vs. ExPASy Swiss-Prot
Match: Q0DK35 (Glutaredoxin-C7 OS=Oryza sativa subsp. japonica OX=39947 GN=GRXC7 PE=3 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 3.1e-21
Identity = 55/101 (54.46%), Postives = 69/101 (68.32%), Query Frame = 0


Query: 29  ESSEARIRRLITEHPVIIFSRSSCSMCHVMKTLLAIIGVHPTVIELNDHDEIAAVPSSSF 88
           E    RI RL+ E PV+IF+R  C MCHVM+ LLA +G H TVIEL   DE A   ++S 
Sbjct: 39  EQPAERIGRLVRESPVVIFARRGCCMCHVMRRLLAAVGAHATVIEL---DEAAEEAAASA 98

Query: 89  VRDSSAPAVFIGGASFGGLETLVALHLSGHLVPKLIEVGAL 130
              ++ PA+F+GGA  GGL+ L+ LHLSG LVP+L EVGAL
Sbjct: 99  AAAAAVPALFVGGAPVGGLDGLMGLHLSGRLVPRLREVGAL 136

[Close]

BLAST of Cp4.1LG11g00260 vs. ExPASy Swiss-Prot
Match: Q5SMY5 (Monothiol glutaredoxin-S2 OS=Oryza sativa subsp. japonica OX=39947 GN=GRXS2 PE=2 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 7.1e-18
Identity = 55/114 (48.25%), Postives = 73/114 (64.04%), Query Frame = 0


Query: 22  SLSID---VDESSEARIRRLITEHPVIIFSRSSCSMCHVMKTLLAIIGVHPTVIELND-- 81
           SL+ID    +E+   R+ RL+ E PV++F+R  C M HVM+ LLA +G H TVIEL    
Sbjct: 15  SLTIDPAGEEEAPAERVGRLVRESPVVVFARRGCYMAHVMRRLLAAVGAHATVIELEGGA 74

Query: 82  -HDEIAAVPSSSFVRDSSAPAVFIGGASFGGLETLVALHLSGHLVPKLIEVGAL 130
             +E AA+        ++ PA+F+GG   GGLE L+ LHLSG LVP+L EVGAL
Sbjct: 75  AEEEEAALGGG-----AALPALFVGGDPVGGLEGLMGLHLSGRLVPRLREVGAL 123

[Close]

BLAST of Cp4.1LG11g00260 vs. ExPASy Swiss-Prot
Match: P0C291 (Monothiol glutaredoxin-S9 OS=Oryza sativa subsp. japonica OX=39947 GN=GRXS9 PE=3 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.2e-14
Identity = 44/98 (44.90%), Postives = 61/98 (62.24%), Query Frame = 0


Query: 32  EARIRRLITEHPVIIFSRSSCSMCHVMKTLLAIIGVHPTVIELNDHDEIAAVPSSSFVRD 91
           E  +RR + E PV++  RS C + HV+K LL  +GV+P V E+    E+A V +      
Sbjct: 35  EEEVRRAVAECPVVVVGRSGCCLSHVVKRLLQGLGVNPAVHEVAGEAELAGVVAGG--GG 94

Query: 92  SSAPAVFIGGASFGGLETLVALHLSGHLVPKLIEVGAL 130
            + PAVF+GG   GGL+ L+A+H+SG LVP L E GAL
Sbjct: 95  VALPAVFVGGRLLGGLDRLMAVHISGELVPILKEAGAL 130

[Close]

BLAST of Cp4.1LG11g00260 vs. NCBI nr
Match: XP_023546567.1 (glutaredoxin-C6-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 263 bits (672), Expect = 1.98e-88
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 1   MNLCANDVVSSELPPSPTSSSSLSIDVDESSEARIRRLITEHPVIIFSRSSCSMCHVMKT 60
           MNLCANDVVSSELPPSPTSSSSLSIDVDESSEARIRRLITEHPVIIFSRSSCSMCHVMKT
Sbjct: 1   MNLCANDVVSSELPPSPTSSSSLSIDVDESSEARIRRLITEHPVIIFSRSSCSMCHVMKT 60

Query: 61  LLAIIGVHPTVIELNDHDEIAAVPSSSFVRDSSAPAVFIGGASFGGLETLVALHLSGHLV 120
           LLAIIGVHPTVIELNDHDEIAAVPSSSFVRDSSAPAVFIGGASFGGLETLVALHLSGHLV
Sbjct: 61  LLAIIGVHPTVIELNDHDEIAAVPSSSFVRDSSAPAVFIGGASFGGLETLVALHLSGHLV 120

Query: 121 PKLIEVGALTVGHVQC 136
           PKLIEVGALTVGHVQC
Sbjct: 121 PKLIEVGALTVGHVQC 136

[Close]

BLAST of Cp4.1LG11g00260 vs. NCBI nr
Match: XP_022961714.1 (glutaredoxin-C6-like [Cucurbita moschata])

HSP 1 Score: 263 bits (671), Expect = 2.81e-88
Identity = 135/136 (99.26%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 1   MNLCANDVVSSELPPSPTSSSSLSIDVDESSEARIRRLITEHPVIIFSRSSCSMCHVMKT 60
           MNLCANDVVSSELPPSPTSSSSLSIDVDESSEARIRRLITEHPVIIFSRSSCSMCHVMKT
Sbjct: 1   MNLCANDVVSSELPPSPTSSSSLSIDVDESSEARIRRLITEHPVIIFSRSSCSMCHVMKT 60

Query: 61  LLAIIGVHPTVIELNDHDEIAAVPSSSFVRDSSAPAVFIGGASFGGLETLVALHLSGHLV 120
           LLAIIGVHPTVIELNDHDEIAAVPSSSF+RDSSAPAVFIGGASFGGLETLVALHLSGHLV
Sbjct: 61  LLAIIGVHPTVIELNDHDEIAAVPSSSFIRDSSAPAVFIGGASFGGLETLVALHLSGHLV 120

Query: 121 PKLIEVGALTVGHVQC 136
           PKLIEVGALTVGHVQC
Sbjct: 121 PKLIEVGALTVGHVQC 136

[Close]

BLAST of Cp4.1LG11g00260 vs. NCBI nr
Match: KAG6598289.1 (Glutaredoxin-C6, partial [Cucurbita argyrosperma subsp. sororia] >KAG7029261.1 Glutaredoxin-C6 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 261 bits (667), Expect = 1.15e-87
Identity = 135/136 (99.26%), Postives = 135/136 (99.26%), Query Frame = 0


Query: 1   MNLCANDVVSSELPPSPTSSSSLSIDVDESSEARIRRLITEHPVIIFSRSSCSMCHVMKT 60
           MNLCANDVVSSELPPSPTSSSSLSIDVDESSEARIRRLITEHPVIIFSRSSCSMCHVMKT
Sbjct: 1   MNLCANDVVSSELPPSPTSSSSLSIDVDESSEARIRRLITEHPVIIFSRSSCSMCHVMKT 60

Query: 61  LLAIIGVHPTVIELNDHDEIAAVPSSSFVRDSSAPAVFIGGASFGGLETLVALHLSGHLV 120
           LLAIIGVHPTVIELNDHDEIAAVP SSFVRDSSAPAVFIGGASFGGLETLVALHLSGHLV
Sbjct: 61  LLAIIGVHPTVIELNDHDEIAAVPCSSFVRDSSAPAVFIGGASFGGLETLVALHLSGHLV 120

Query: 121 PKLIEVGALTVGHVQC 136
           PKLIEVGALTVGHVQC
Sbjct: 121 PKLIEVGALTVGHVQC 136

[Close]

BLAST of Cp4.1LG11g00260 vs. NCBI nr
Match: XP_022997508.1 (glutaredoxin-C6-like [Cucurbita maxima])

HSP 1 Score: 261 bits (667), Expect = 1.15e-87
Identity = 135/136 (99.26%), Postives = 135/136 (99.26%), Query Frame = 0


Query: 1   MNLCANDVVSSELPPSPTSSSSLSIDVDESSEARIRRLITEHPVIIFSRSSCSMCHVMKT 60
           MNLCANDVVSSELPPSPTSSSSLSIDVDESSEARIRRLITEHPVIIFSRSSCSMCHVMKT
Sbjct: 1   MNLCANDVVSSELPPSPTSSSSLSIDVDESSEARIRRLITEHPVIIFSRSSCSMCHVMKT 60

Query: 61  LLAIIGVHPTVIELNDHDEIAAVPSSSFVRDSSAPAVFIGGASFGGLETLVALHLSGHLV 120
           LLAIIGVHPTVIELNDHDEIAAVPSSSFVRDSSAPAVFIGGASFGGLETLVALHLSGHLV
Sbjct: 61  LLAIIGVHPTVIELNDHDEIAAVPSSSFVRDSSAPAVFIGGASFGGLETLVALHLSGHLV 120

Query: 121 PKLIEVGALTVGHVQC 136
           PKLIEVGAL VGHVQC
Sbjct: 121 PKLIEVGALAVGHVQC 136

[Close]

BLAST of Cp4.1LG11g00260 vs. NCBI nr
Match: XP_038885533.1 (glutaredoxin-C6-like isoform X1 [Benincasa hispida])

HSP 1 Score: 244 bits (624), Expect = 4.14e-81
Identity = 125/136 (91.91%), Postives = 130/136 (95.59%), Query Frame = 0


Query: 1   MNLCANDVVSSELPPSPTSSSSLSIDVDESSEARIRRLITEHPVIIFSRSSCSMCHVMKT 60
           M+ C NDVVSSE PPSPTSSSSLSIDVDESSE RIRRLI EHPVIIFSR+SCSMCHVMKT
Sbjct: 1   MHRCPNDVVSSEFPPSPTSSSSLSIDVDESSETRIRRLIAEHPVIIFSRTSCSMCHVMKT 60

Query: 61  LLAIIGVHPTVIELNDHDEIAAVPSSSFVRDSSAPAVFIGGASFGGLETLVALHLSGHLV 120
           LLAIIGVHPTVIEL+DHDEIAAVPSSSFVRDSSAPAVFIGGASFGGLE+LVALHLSGHL+
Sbjct: 61  LLAIIGVHPTVIELDDHDEIAAVPSSSFVRDSSAPAVFIGGASFGGLESLVALHLSGHLI 120

Query: 121 PKLIEVGALTVGHVQC 136
           PKLIEVGAL VGHVQC
Sbjct: 121 PKLIEVGALPVGHVQC 136

[Close]

BLAST of Cp4.1LG11g00260 vs. ExPASy TrEMBL
Match: A0A6J1HEU7 (glutaredoxin-C6-like OS=Cucurbita moschata OX=3662 GN=LOC111462402 PE=3 SV=1)

HSP 1 Score: 263 bits (671), Expect = 1.36e-88
Identity = 135/136 (99.26%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 1   MNLCANDVVSSELPPSPTSSSSLSIDVDESSEARIRRLITEHPVIIFSRSSCSMCHVMKT 60
           MNLCANDVVSSELPPSPTSSSSLSIDVDESSEARIRRLITEHPVIIFSRSSCSMCHVMKT
Sbjct: 1   MNLCANDVVSSELPPSPTSSSSLSIDVDESSEARIRRLITEHPVIIFSRSSCSMCHVMKT 60

Query: 61  LLAIIGVHPTVIELNDHDEIAAVPSSSFVRDSSAPAVFIGGASFGGLETLVALHLSGHLV 120
           LLAIIGVHPTVIELNDHDEIAAVPSSSF+RDSSAPAVFIGGASFGGLETLVALHLSGHLV
Sbjct: 61  LLAIIGVHPTVIELNDHDEIAAVPSSSFIRDSSAPAVFIGGASFGGLETLVALHLSGHLV 120

Query: 121 PKLIEVGALTVGHVQC 136
           PKLIEVGALTVGHVQC
Sbjct: 121 PKLIEVGALTVGHVQC 136

[Close]

BLAST of Cp4.1LG11g00260 vs. ExPASy TrEMBL
Match: A0A6J1KE42 (glutaredoxin-C6-like OS=Cucurbita maxima OX=3661 GN=LOC111492406 PE=3 SV=1)

HSP 1 Score: 261 bits (667), Expect = 5.55e-88
Identity = 135/136 (99.26%), Postives = 135/136 (99.26%), Query Frame = 0


Query: 1   MNLCANDVVSSELPPSPTSSSSLSIDVDESSEARIRRLITEHPVIIFSRSSCSMCHVMKT 60
           MNLCANDVVSSELPPSPTSSSSLSIDVDESSEARIRRLITEHPVIIFSRSSCSMCHVMKT
Sbjct: 1   MNLCANDVVSSELPPSPTSSSSLSIDVDESSEARIRRLITEHPVIIFSRSSCSMCHVMKT 60

Query: 61  LLAIIGVHPTVIELNDHDEIAAVPSSSFVRDSSAPAVFIGGASFGGLETLVALHLSGHLV 120
           LLAIIGVHPTVIELNDHDEIAAVPSSSFVRDSSAPAVFIGGASFGGLETLVALHLSGHLV
Sbjct: 61  LLAIIGVHPTVIELNDHDEIAAVPSSSFVRDSSAPAVFIGGASFGGLETLVALHLSGHLV 120

Query: 121 PKLIEVGALTVGHVQC 136
           PKLIEVGAL VGHVQC
Sbjct: 121 PKLIEVGALAVGHVQC 136

[Close]

BLAST of Cp4.1LG11g00260 vs. ExPASy TrEMBL
Match: A0A1S3BAG0 (glutaredoxin-C6-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103487778 PE=3 SV=1)

HSP 1 Score: 239 bits (610), Expect = 2.73e-79
Identity = 124/136 (91.18%), Postives = 127/136 (93.38%), Query Frame = 0


Query: 1   MNLCANDVVSSELPPSPTSSSSLSIDVDESSEARIRRLITEHPVIIFSRSSCSMCHVMKT 60
           M    ND VS E PPSPTSSSSLSIDVDESSE RIRRLITEHPVIIFSRSSCSMCHVMKT
Sbjct: 1   MRRSTNDAVSFEFPPSPTSSSSLSIDVDESSETRIRRLITEHPVIIFSRSSCSMCHVMKT 60

Query: 61  LLAIIGVHPTVIELNDHDEIAAVPSSSFVRDSSAPAVFIGGASFGGLETLVALHLSGHLV 120
           LLAIIGVHPTVIE++DHDEIAAVPSSSFVRDSSAPAVFIGGASFGGLE+LVALHLSGHLV
Sbjct: 61  LLAIIGVHPTVIEVDDHDEIAAVPSSSFVRDSSAPAVFIGGASFGGLESLVALHLSGHLV 120

Query: 121 PKLIEVGALTVGHVQC 136
           PKLIEVGAL VGHVQC
Sbjct: 121 PKLIEVGALPVGHVQC 136

[Close]

BLAST of Cp4.1LG11g00260 vs. ExPASy TrEMBL
Match: A0A0A0LN11 (Glutaredoxin OS=Cucumis sativus OX=3659 GN=Csa_2G351650 PE=3 SV=1)

HSP 1 Score: 238 bits (608), Expect = 5.51e-79
Identity = 123/136 (90.44%), Postives = 128/136 (94.12%), Query Frame = 0


Query: 1   MNLCANDVVSSELPPSPTSSSSLSIDVDESSEARIRRLITEHPVIIFSRSSCSMCHVMKT 60
           M+   ND VS E PPSPTSSSSLSIDVDESSE RIRRLIT+HPVIIFSRSSCSMCHVMKT
Sbjct: 1   MHRSTNDAVSFEFPPSPTSSSSLSIDVDESSETRIRRLITDHPVIIFSRSSCSMCHVMKT 60

Query: 61  LLAIIGVHPTVIELNDHDEIAAVPSSSFVRDSSAPAVFIGGASFGGLETLVALHLSGHLV 120
           LLAIIGVHPTVIE++DHDEIAAVPSSSFVRDSSAPAVFIGGASFGGLE+LVALHLSGHLV
Sbjct: 61  LLAIIGVHPTVIEVDDHDEIAAVPSSSFVRDSSAPAVFIGGASFGGLESLVALHLSGHLV 120

Query: 121 PKLIEVGALTVGHVQC 136
           PKLIEVGAL VGHVQC
Sbjct: 121 PKLIEVGALPVGHVQC 136

[Close]

BLAST of Cp4.1LG11g00260 vs. ExPASy TrEMBL
Match: A0A5A7UYF1 (Glutaredoxin-C6-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G001380 PE=3 SV=1)

HSP 1 Score: 226 bits (577), Expect = 2.66e-74
Identity = 119/131 (90.84%), Postives = 122/131 (93.13%), Query Frame = 0


Query: 1   MNLCANDVVSSELPPSPTSSSSLSIDVDESSEARIRRLITEHPVIIFSRSSCSMCHVMKT 60
           M    ND VS E PPSPTSSSSLSIDVDESSE RIRRLITEHPVIIFSRSSCSMCHVMKT
Sbjct: 1   MRRSTNDAVSFEFPPSPTSSSSLSIDVDESSETRIRRLITEHPVIIFSRSSCSMCHVMKT 60

Query: 61  LLAIIGVHPTVIELNDHDEIAAVPSSSFVRDSSAPAVFIGGASFGGLETLVALHLSGHLV 120
           LLAIIGVHPTVIE++DHDEIAAVPSSSFVRDSSAPAVFIGGASFGGLE+LVALHLSGHLV
Sbjct: 61  LLAIIGVHPTVIEVDDHDEIAAVPSSSFVRDSSAPAVFIGGASFGGLESLVALHLSGHLV 120

Query: 121 PKLIEVGALTV 131
           PKLIEVGAL V
Sbjct: 121 PKLIEVGALPV 131

[Close]

BLAST of Cp4.1LG11g00260 vs. TAIR 10
Match: AT4G33040.1 (Thioredoxin superfamily protein )

HSP 1 Score: 148.7 bits (374), Expect = 3.5e-36
Identity = 88/135 (65.19%), Postives = 105/135 (77.78%), Query Frame = 0


Query: 5   ANDVVSSEL-PPSPTSSSSLSIDVDESSEARIRRLITEHPVIIFSRSSCSMCHVMKTLLA 64
           +NDVV  +L PPS TSS+SLSID +ES+EA+IRRLI+EHPVIIFSRSSC MCHVMK LLA
Sbjct: 11  SNDVVRLDLTPPSQTSSTSLSIDEEESTEAKIRRLISEHPVIIFSRSSCCMCHVMKRLLA 70

Query: 65  IIGVHPTVIELNDHDEIAAVPSSSFVRDSSA-------PAVFIGGASFGGLETLVALHLS 124
            IGV PTVIEL+DH E++++P++     S         PAVFIG    GGLE+LVALHLS
Sbjct: 71  TIGVIPTVIELDDH-EVSSLPTALQDEYSGGVSVVGPPPAVFIGRECVGGLESLVALHLS 130

Query: 125 GHLVPKLIEVGALTV 132
           G LVPKL++VGAL V
Sbjct: 131 GQLVPKLVQVGALWV 144

[Close]

BLAST of Cp4.1LG11g00260 vs. TAIR 10
Match: AT5G11930.1 (Thioredoxin superfamily protein )

HSP 1 Score: 129.8 bits (325), Expect = 1.7e-30
Identity = 77/144 (53.47%), Postives = 101/144 (70.14%), Query Frame = 0


Query: 4   CANDVVSSEL-----------PPSP------TSSSSLSIDVDESSEARIRRLITEHPVII 63
           C+ND V+ +L           PP+P      T+S+SLS D +E+SE++I RLI+EHPVII
Sbjct: 10  CSNDAVTLDLTVHPPPPPPLPPPAPSTVSSSTASTSLSFDEEETSESKIGRLISEHPVII 69

Query: 64  FSR-SSCSMCHVMKTLLAIIGVHPTVIELNDHDEIAAVPSSSFVRDSSAPAVFIGGASFG 123
           F+R SSC MCHVMK LL+ +GVHPTVIE++D  EIA      ++   +AP +FIGG   G
Sbjct: 70  FTRFSSCCMCHVMKKLLSTVGVHPTVIEIDD-GEIA------YLAVEAAPVLFIGGTCVG 129

Query: 124 GLETLVALHLSGHLVPKLIEVGAL 130
           G E+LVALHLSG L+P+L+EVGAL
Sbjct: 130 GFESLVALHLSGQLIPRLVEVGAL 146

[Close]

BLAST of Cp4.1LG11g00260 vs. TAIR 10
Match: AT1G28480.1 (Thioredoxin superfamily protein )

HSP 1 Score: 80.5 bits (197), Expect = 1.2e-15
Identity = 46/113 (40.71%), Postives = 71/113 (62.83%), Query Frame = 0


Query: 23  LSIDVDESSEARIRRLITEHPVIIFSRSSCSMCHVMKTLLAIIGVHPTVIELND--HDEI 82
           LS+    + E R+R ++ E+ VI+  R  C MCHV++ LL  +GV+P V+E+++   DE+
Sbjct: 24  LSLKTQGNGE-RVRMVVEENAVIVIGRRGCCMCHVVRRLLLGLGVNPAVLEIDEEREDEV 83

Query: 83  AAVPSSSFVRDSSA----PAVFIGGASFGGLETLVALHLSGHLVPKLIEVGAL 130
            +   +  V+        PAV++GG  FGGL+ ++A H+SG LVP L EVGAL
Sbjct: 84  LSELENIGVQGGGGTVKLPAVYVGGRLFGGLDRVMATHISGELVPILKEVGAL 135

[Close]

BLAST of Cp4.1LG11g00260 vs. TAIR 10
Match: AT5G18600.1 (Thioredoxin superfamily protein )

HSP 1 Score: 72.8 bits (177), Expect = 2.4e-13
Identity = 40/99 (40.40%), Postives = 57/99 (57.58%), Query Frame = 0


Query: 35  IRRLITEHPVIIFSRSSCSMCHVMKTLLAIIGVHPTVIELNDHDEIAAVPSSSFVRDSS- 94
           I +++ E PV+I+S+SSC M H +KTLL   G +P V EL++      +  +      S 
Sbjct: 4   ITKMVMERPVVIYSKSSCCMSHTIKTLLCDFGANPAVYELDEISRGREIEQALLRLGCSP 63

Query: 95  -APAVFIGGASFGGLETLVALHLSGHLVPKLIEVGALTV 132
             P VFIGG   GG   +++LHL+G L+P L   GAL V
Sbjct: 64  AVPGVFIGGELVGGANEVMSLHLNGSLIPMLKRAGALWV 102

[Close]

BLAST of Cp4.1LG11g00260 vs. TAIR 10
Match: AT4G15680.1 (Thioredoxin superfamily protein )

HSP 1 Score: 70.5 bits (171), Expect = 1.2e-12
Identity = 38/98 (38.78%), Postives = 60/98 (61.22%), Query Frame = 0


Query: 34  RIRRLITEHPVIIFSRSSCSMCHVMKTLLAIIGVHPTVIELNDHDEIAAVPS--SSFVRD 93
           +++++I+E  V+IFS++SC M H +KTL    GV+PT+ EL++ +    +    +     
Sbjct: 3   KLQKMISEKSVVIFSKNSCCMSHTIKTLFIDFGVNPTIYELDEINRGKEIEQALAQLGCS 62

Query: 94  SSAPAVFIGGASFGGLETLVALHLSGHLVPKLIEVGAL 130
            + P VFIGG   GG   +++LHL+  LVP L  VGAL
Sbjct: 63  PTVPVVFIGGQLVGGANQVMSLHLNRSLVPMLKRVGAL 100

The following BLAST results are available for this feature:

BLAST of Cp4.1LG11g00260 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L9S3	4.9e-35	65.19	Glutaredoxin-C6 OS=Arabidopsis thaliana OX=3702 GN=GRXC6 PE=2 SV=2	[more]
Q29PZ1	2.3e-29	53.47	Glutaredoxin-C10 OS=Arabidopsis thaliana OX=3702 GN=GRXC10 PE=2 SV=1	[more]
Q0DK35	3.1e-21	54.46	Glutaredoxin-C7 OS=Oryza sativa subsp. japonica OX=39947 GN=GRXC7 PE=3 SV=1	[more]
Q5SMY5	7.1e-18	48.25	Monothiol glutaredoxin-S2 OS=Oryza sativa subsp. japonica OX=39947 GN=GRXS2 PE=2...	[more]
P0C291	1.2e-14	44.90	Monothiol glutaredoxin-S9 OS=Oryza sativa subsp. japonica OX=39947 GN=GRXS9 PE=3...	[more]

BLAST of Cp4.1LG11g00260 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023546567.1	1.98e-88	100.00	glutaredoxin-C6-like [Cucurbita pepo subsp. pepo]	[more]
XP_022961714.1	2.81e-88	99.26	glutaredoxin-C6-like [Cucurbita moschata]	[more]
KAG6598289.1	1.15e-87	99.26	Glutaredoxin-C6, partial [Cucurbita argyrosperma subsp. sororia] >KAG7029261.1 G...	[more]
XP_022997508.1	1.15e-87	99.26	glutaredoxin-C6-like [Cucurbita maxima]	[more]
XP_038885533.1	4.14e-81	91.91	glutaredoxin-C6-like isoform X1 [Benincasa hispida]	[more]

BLAST of Cp4.1LG11g00260 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HEU7	1.36e-88	99.26	glutaredoxin-C6-like OS=Cucurbita moschata OX=3662 GN=LOC111462402 PE=3 SV=1	[more]
A0A6J1KE42	5.55e-88	99.26	glutaredoxin-C6-like OS=Cucurbita maxima OX=3661 GN=LOC111492406 PE=3 SV=1	[more]
A0A1S3BAG0	2.73e-79	91.18	glutaredoxin-C6-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103487778 PE=3 SV=...	[more]
A0A0A0LN11	5.51e-79	90.44	Glutaredoxin OS=Cucumis sativus OX=3659 GN=Csa_2G351650 PE=3 SV=1	[more]
A0A5A7UYF1	2.66e-74	90.84	Glutaredoxin-C6-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]

BLAST of Cp4.1LG11g00260 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G33040.1	3.5e-36	65.19	Thioredoxin superfamily protein	[more]
AT5G11930.1	1.7e-30	53.47	Thioredoxin superfamily protein	[more]
AT1G28480.1	1.2e-15	40.71	Thioredoxin superfamily protein	[more]
AT5G18600.1	2.4e-13	40.40	Thioredoxin superfamily protein	[more]
AT4G15680.1	1.2e-12	38.78	Thioredoxin superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014025	Glutaredoxin subgroup	PRINTS	PR00160	GLUTAREDOXIN	coord: 44..62 score: 35.09 coord: 101..114 score: 31.55 coord: 87..100 score: 26.19
IPR002109	Glutaredoxin	PFAM	PF00462	Glutaredoxin	coord: 44..101 e-value: 7.4E-7 score: 29.3
IPR011905	Glutaredoxin-like, plant II	TIGRFAM	TIGR02189	TIGR02189	coord: 35..130 e-value: 7.2E-31 score: 104.1
IPR011905	Glutaredoxin-like, plant II	PANTHER	PTHR10168	GLUTAREDOXIN	coord: 7..130
None	No IPR available	GENE3D	3.40.30.10	Glutaredoxin	coord: 25..134 e-value: 5.8E-23 score: 82.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	PANTHER	PTHR10168:SF56	GLUTAREDOXIN-C6	coord: 7..130
None	No IPR available	PROSITE	PS51354	GLUTAREDOXIN_2	coord: 32..130 score: 18.647579
IPR036249	Thioredoxin-like superfamily	SUPERFAMILY	52833	Thioredoxin-like	coord: 32..129

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG11g00260.1	Cp4.1LG11g00260.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0097573	glutathione oxidoreductase activity