Cp4.1LG10g05770 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG10g05770
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	DNA-binding protein DDB_G0278111-like
Location	Cp4.1LG10: 701124 .. 704812 (-)
RNA-Seq Expression	Cp4.1LG10g05770
Synteny	Cp4.1LG10g05770

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAGATGCCAAAAAAAGTGGAACAATATTTGGAATTTGAGGCACGACCTGGAGGTCCGATACGCGCTACAGGGAAAAGGTGGGTCGCGCCACATAAACGCAACCGAGGAAATCTGTAGCCTCGTTTTCGCTCTGCAGCTTATACGAAATTATTGAACTTCAGTTCTACTGACTGCTACCACGATCCTCGAAGCAATGGTAATTTCGCCAATATCACCTTCATGTTGTCGATTCATTTTTAGTGTGTGGAAACCCTGCAGTTTGCGATGTAATCGAATGTTGCTTCAACTTGATTTTACCCTATTTATGCTAATATTTGCTTTTCATTGCTTTGAACCCCGCTTGACCAAATGTGGGTCTCTCCGTTTTGCTTCAGCAATATTTCTTCTGTTCCTAATCGGGGATTGGCTTTTATCTAAGTTGTTTACTTGCTTTTTCCCCCTGCTCGTACAAGAATTCTTCAAGATTAGGATTAGATTAGAAACTGTTAGTCCATTTTCAGGTGAAATATATGAATATATCTATAGACCAGCTCATGCGTACGCTACGCATATAGTAGTTAGTGGTTTTTGGATTTGAAAAAAATTGATTTGATACATTTATGTTCACGCTGCAGTTTGTGCCAAATGAAGCGACATAGGATGTTTTGTTCATGTCTCATTACTGCGTAAGGGTGAGAAGGGTTATATATGTCATGTATGTATGTCAACTTTACTTGTTGGATGTCAAGAATGGTCATTTAAAGGGAGAAAAATCTCTATTTTAGTTAGTTTCTTCCCCCATCATTTTTATTTTGAACAATCAAAAGGTTATTGATTACAATAGAGGACCATTAAAAATCTGTTGCTACAACCTTACCAAGTGATTTCAATCTTATAACTTATAAGTTCGATTGCTTAGCTGCTTATATTATCTAAGTAGCAAGTGCCCATGACTTTCAATTATATTTGGCATCCGATAAACTCTTATCTTTTCTTTTCGTGCCATTTTCTTATCTAAGTTGAGTTTTAAATTGAATAATTGACCCTCATATAGGATGATCCTGAACTAGAAGCCATCAGGCAGAGAAGAATGCAGGAACTCATGGCCCAGCGTGGCGGGGTAAGCTGTAATTTTTTTGTTTACATACGTAGTAACTGCTTACTTGATCGTGGACATCTTTGCTGACTTCTAATGATGATTAGGGAAGCCAAAATAATCCTGAACAACAGAAGGCCCAGGAAGAAGCTAAGAGGTTCTCACTTTTATTTTCATTAGTTTTTAGTTGTTACTTTCATTATTCAAGTCCTGCTTTATTGTGCATATGAATGATAACAATTACTTTCACTTTCAGTGAAGCAGAGGAACGCAGACAAATGATGCTCAGTCAGATTCTGTCAATGCAAGCTAGAGAAAGACGTAAGTATATTCTTCAACTTTGGAGTAAGCTAGTTTCTTATATCTATGTGATCTTTGACTGTCTCCATATGGATTTTTTCCTAGCTATTTTTGTTTGAAACTCTGGACCTAACTCACATCCTAAGTTAATCATGAAATTAATGTAAGTTTACATTTGCGATGCTATTAATGTGTGGTTGAATATTGAATTTATATGGTAACCTATGTGTCGATTTGGAATTTTGAAGCTGCTTCAAGTTCAATCATTTACTGGACTTGAAAGTAAGGGTAGGGTACAACAACTTTGCGGGCTGCTGTTAGTGGGAATTGTGGAAATGAGGTCAGGATTGATATTTCAATACATTTGCAGCTTTCATTTTGTCTGCAAGTGCGAAAGAGTTCTGTTATTTCCCTTCATTTTTAACACGACAGTTGAGATTTGCTGTCATCTTGTCCTCTTGCAGGATTTGGAGGCACAGTCTTAGCCTTTCGTGCTCTCCTTCATGAATACAATTATTGTTTCTGGATTTGACCGTGATTGGAATTCTGTTTACTGCACAAGTACACAAGATGTATCAATATGATAACAATGTTGGCATCAATATGATAACAAGGTTCCAGGAAACCCACCCATGTACTCATTCTTACGCCAATAAAGTTAGAAATGCCGGCAAATCATTTTTCTAACCTTTTGCTTGAGTTGCGTCTGTTAGTTATTTAGGAGAAAGAGAAACTTTTGTTGGCCATGGATTTTAGGAGTGCAAAAGTTTTCTTGTCTCATGCTACCAAGGCCATCGTATTAAGCACTATGACTGGAGAGAACACCCTTTTTTTTCTTTTGAATGAGAAGCGGTGTATGGATTGGGTTGAAGCTTTTAACATAGCTAAGTTTTTTGTTAGTTCAATTTAGATCTACATTGGTATGGAGACTCGGAGAATGGGAGGAAGTGGGTTTTAACCTACACATATAATGCAAAAACTGTTTCTCACAAAAGCACTCTCAAAAGGTCAAGAGAGTGACGAAAACTATCCCTCGCCCTTAGAATAAGGCTCACACTTTGTATTACTCAACCTTAGCGTGCTTGTAGATAGTTTCCTTCTATTGACAAATTGTACTTTTCCTCATCCATCAACCCCACATTGACTCCCCCTCCCTGAAAGAAAGAGAGAAAAAAGATTCTCTGAATTGGATTTAAATCTCATTGGTTCAGTTTAAGGATGAATTTCATTGCATTCTTTCAATTCTCGGACATTCTTCATTATAGACCATCCTCTTGATTAGAATTTTTATGCTGGTCGTAGATAACCTTGTCATTTTTCTAAGTGGTTACTGATCCTCTCTTTTAAATCACCATTCACGATTCTCAATTCTTTTGTATATTATTGTTGCTTAGTTGAAGTTGAATACCTGTCAAGTGTACGTTTTGCAGCTTTGCTTGTGAGTAGATTTGTGGTTTTTTGGGTTGGGTATTTGTGGTTTTTTGCTCGTTTTTCCCTATTCATACTTTGGAAAACTAGGTTATTGGCAGTTTTGCCCTATTCATACTCATTTTTCCCCTGTGCTTTTATGCAGTTGCTCGAATTGCATTGGTTAAACCTGAGAAGGCGAGAGGTGTCGAAGATGTTATACTGAGAGCTGCACAGATGGGCCAAATTGTAGAGAAGGTTCAGTAATATATCATTTTAGTTTCTCTGACAAAATTGTTGCACCTACATTTAATTGAGAATATGGCAACACCAGTGTGTCAATGAAGCAACGGGCCATTTTTTTTCAGGTTTCTGAAGAGAGGCTTATTACATTGCTAGAACAGATTAACAACCAGACCACAAAACAGACGAAAGTTACTGTGAGTTTTCATTGCTTACTTCCGCCTGCTGAATTTTGGTATGTTCATGTCCTGATGGTATTTGTATATTCTCATTATTCTTCAGATACAAAGGCGTCGGAGCGTTCTTGATGATGACGATTAGAAAGTGAGATGGGTTGCACACCTTATATGATATATGATTATACCCGCAGTCTTGGTTGTATGTTTATTGCTTGTGCGGTACAATATCTTCCTTTTTATCTATTTACTTTATCATGATCCCCCTCATATTCTCACCTCAGAATTCAAGAGCTCCTCGCCACTAGCTGGTATTACACCATTGTTAAGGTCAAATTCGCTAAACTATTAATCTGTATGACAGAGTATCAACCTTGAATTATTATTTTTCTTTCTTATTTGTGATTGCTCAGAGAGTGATCCATTGAATATATAGCTCTTGATAAAGGGGTGATTTGGATTGTTGTTTATGAGTTGAAGTACATTT

mRNA sequence

CAAGATGCCAAAAAAAGTGGAACAATATTTGGAATTTGAGGCACGACCTGGAGGTCCGATACGCGCTACAGGGAAAAGGTGGGTCGCGCCACATAAACGCAACCGAGGAAATCTGTAGCCTCGTTTTCGCTCTGCAGCTTATACGAAATTATTGAACTTCAGTTCTACTGACTGCTACCACGATCCTCGAAGCAATGGATGATCCTGAACTAGAAGCCATCAGGCAGAGAAGAATGCAGGAACTCATGGCCCAGCGTGGCGGGGGAAGCCAAAATAATCCTGAACAACAGAAGGCCCAGGAAGAAGCTAAGAGTGAAGCAGAGGAACGCAGACAAATGATGCTCAGTCAGATTCTGTCAATGCAAGCTAGAGAAAGACTTGCTCGAATTGCATTGGTTAAACCTGAGAAGGCGAGAGGTGTCGAAGATGTTATACTGAGAGCTGCACAGATGGGCCAAATTGTAGAGAAGGTTTCTGAAGAGAGGCTTATTACATTGCTAGAACAGATTAACAACCAGACCACAAAACAGACGAAAGTTACTATACAAAGGCGTCGGAGCGTTCTTGATGATGACGATTAGAAAGTGAGATGGGTTGCACACCTTATATGATATATGATTATACCCGCAGTCTTGGTTGTATGTTTATTGCTTGTGCGGTACAATATCTTCCTTTTTATCTATTTACTTTATCATGATCCCCCTCATATTCTCACCTCAGAATTCAAGAGCTCCTCGCCACTAGCTGGTATTACACCATTGTTAAGGTCAAATTCGCTAAACTATTAATCTGTATGACAGAGTATCAACCTTGAATTATTATTTTTCTTTCTTATTTGTGATTGCTCAGAGAGTGATCCATTGAATATATAGCTCTTGATAAAGGGGTGATTTGGATTGTTGTTTATGAGTTGAAGTACATTT

Coding sequence (CDS)

ATGGATGATCCTGAACTAGAAGCCATCAGGCAGAGAAGAATGCAGGAACTCATGGCCCAGCGTGGCGGGGGAAGCCAAAATAATCCTGAACAACAGAAGGCCCAGGAAGAAGCTAAGAGTGAAGCAGAGGAACGCAGACAAATGATGCTCAGTCAGATTCTGTCAATGCAAGCTAGAGAAAGACTTGCTCGAATTGCATTGGTTAAACCTGAGAAGGCGAGAGGTGTCGAAGATGTTATACTGAGAGCTGCACAGATGGGCCAAATTGTAGAGAAGGTTTCTGAAGAGAGGCTTATTACATTGCTAGAACAGATTAACAACCAGACCACAAAACAGACGAAAGTTACTATACAAAGGCGTCGGAGCGTTCTTGATGATGACGATTAG

Protein sequence

MDDPELEAIRQRRMQELMAQRGGGSQNNPEQQKAQEEAKSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRRSVLDDDD

Homology

[Close]

BLAST of Cp4.1LG10g05770 vs. ExPASy Swiss-Prot
Match: Q54YS0 (DNA-binding protein DDB_G0278111 OS=Dictyostelium discoideum OX=44689 GN=DDB_G0278111 PE=3 SV=2)

HSP 1 Score: 90.1 bits (222), Expect = 1.9e-17
Identity = 58/114 (50.88%), Postives = 85/114 (74.56%), Query Frame = 0


Query: 15  QELMAQRGGGSQNNPEQQKAQEEAKSEAEERRQMMLSQILSMQARERLARIALVKPEKAR 74
           Q+L   +G G   +PE Q+ QE  + EA ERRQ +L QIL+  ARERL+RI +VKPEK+R
Sbjct: 9   QQLSQMQGQGF--DPEAQQRQEAQRQEANERRQGILIQILTPDARERLSRITIVKPEKSR 68

Query: 75  GVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRRSVLDDDD 129
            +ED+I+RAAQ GQ+ E+V + +LI+LLEQ+ ++ TK+T +T++RR   ++DDD
Sbjct: 69  QIEDLIIRAAQTGQLTERVDDAKLISLLEQL-SEKTKKTTITMKRR--TIEDDD 117

[Close]

BLAST of Cp4.1LG10g05770 vs. ExPASy Swiss-Prot
Match: O14737 (Programmed cell death protein 5 OS=Homo sapiens OX=9606 GN=PDCD5 PE=1 SV=3)

HSP 1 Score: 85.9 bits (211), Expect = 3.7e-16
Identity = 55/128 (42.97%), Postives = 82/128 (64.06%), Query Frame = 0


Query: 1   MDDPELEAIRQRRMQELMAQRGGGSQNNPEQQKAQEEAKSEAEERRQMMLSQILSMQARE 60
           M D ELEA+R++R+ EL A+ G           AQ+EAK    E R  +L+Q+L   AR 
Sbjct: 1   MADEELEALRRQRLAELQAKHGDPG------DAAQQEAKHREAEMRNSILAQVLDQSARA 60

Query: 61  RLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRR 120
           RL+ +ALVKPEK + VE+ +++ A+ GQ+ EKVSE+ LI +L++++ QT K T V   RR
Sbjct: 61  RLSNLALVKPEKTKAVENYLIQMARYGQLSEKVSEQGLIEILKKVSQQTEKTTTVKFNRR 120

Query: 121 RSVLDDDD 129
           + +  D+D
Sbjct: 121 KVMDSDED 122

[Close]

BLAST of Cp4.1LG10g05770 vs. ExPASy Swiss-Prot
Match: P56812 (Programmed cell death protein 5 OS=Mus musculus OX=10090 GN=Pdcd5 PE=1 SV=3)

HSP 1 Score: 85.9 bits (211), Expect = 3.7e-16
Identity = 55/128 (42.97%), Postives = 82/128 (64.06%), Query Frame = 0


Query: 1   MDDPELEAIRQRRMQELMAQRGGGSQNNPEQQKAQEEAKSEAEERRQMMLSQILSMQARE 60
           M D ELEA+R++R+ EL A+ G           AQ+EAK    E R  +L+Q+L   AR 
Sbjct: 1   MADEELEALRKQRLAELQAKHGDPG------DAAQQEAKQREAEMRNSILAQVLDQSARA 60

Query: 61  RLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRR 120
           RL+ +ALVKPEK + VE+ +++ A+ GQ+  KVSE+ LI +LE+++ QT K+T V   RR
Sbjct: 61  RLSNLALVKPEKTKAVENYLIQMARYGQLSGKVSEQGLIEILEKVSQQTEKKTTVKFNRR 120

Query: 121 RSVLDDDD 129
           + +  D+D
Sbjct: 121 KVMDSDED 122

[Close]

BLAST of Cp4.1LG10g05770 vs. ExPASy Swiss-Prot
Match: Q5RBT0 (Programmed cell death protein 5 OS=Pongo abelii OX=9601 GN=PDCD5 PE=2 SV=3)

HSP 1 Score: 85.9 bits (211), Expect = 3.7e-16
Identity = 55/128 (42.97%), Postives = 82/128 (64.06%), Query Frame = 0


Query: 1   MDDPELEAIRQRRMQELMAQRGGGSQNNPEQQKAQEEAKSEAEERRQMMLSQILSMQARE 60
           M D ELEA+R++R+ EL A+ G           AQ+EAK    E R  +L+Q+L   AR 
Sbjct: 1   MADEELEALRRQRLAELQAKHGDPG------DAAQQEAKHREAEMRNSILAQVLDQSARA 60

Query: 61  RLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRR 120
           RL+ +ALVKPEK + VE+ +++ A+ GQ+ EKVSE+ LI +L++++ QT K T V   RR
Sbjct: 61  RLSNLALVKPEKTKAVENYLIQMARYGQLSEKVSEQGLIEILKKVSQQTEKTTTVKFNRR 120

Query: 121 RSVLDDDD 129
           + +  D+D
Sbjct: 121 KVMDSDED 122

[Close]

BLAST of Cp4.1LG10g05770 vs. ExPASy Swiss-Prot
Match: Q2HJH9 (Programmed cell death protein 5 OS=Bos taurus OX=9913 GN=PDCD5 PE=2 SV=3)

HSP 1 Score: 84.0 bits (206), Expect = 1.4e-15
Identity = 54/128 (42.19%), Postives = 82/128 (64.06%), Query Frame = 0


Query: 1   MDDPELEAIRQRRMQELMAQRGGGSQNNPEQQKAQEEAKSEAEERRQMMLSQILSMQARE 60
           M + ELEA+R++R+ EL A+ G           AQ+EAK    E R  +L+Q+L   AR 
Sbjct: 1   MAEQELEALRKQRLAELQAKHGDPG------DAAQQEAKHREAEMRNSILAQVLDQSARA 60

Query: 61  RLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRR 120
           RL+ +ALVKPEK + VE+ +++ A+ GQ+  KVSE+ LI +LE+++ QT K+T V   RR
Sbjct: 61  RLSNLALVKPEKTKAVENYLIQMARYGQLSGKVSEQGLIEILEKVSQQTEKKTTVKFNRR 120

Query: 121 RSVLDDDD 129
           + +  D+D
Sbjct: 121 KVMDSDED 122

[Close]

BLAST of Cp4.1LG10g05770 vs. NCBI nr
Match: XP_023543163.1 (DNA-binding protein DDB_G0278111-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 228 bits (580), Expect = 1.17e-74
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   MDDPELEAIRQRRMQELMAQRGGGSQNNPEQQKAQEEAKSEAEERRQMMLSQILSMQARE 60
           MDDPELEAIRQRRMQELMAQRGGGSQNNPEQQKAQEEAKSEAEERRQMMLSQILSMQARE
Sbjct: 1   MDDPELEAIRQRRMQELMAQRGGGSQNNPEQQKAQEEAKSEAEERRQMMLSQILSMQARE 60

Query: 61  RLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRR 120
           RLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRR
Sbjct: 61  RLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRR 120

Query: 121 RSVLDDDD 128
           RSVLDDDD
Sbjct: 121 RSVLDDDD 128

[Close]

BLAST of Cp4.1LG10g05770 vs. NCBI nr
Match: XP_023543162.1 (DNA-binding protein DDB_G0278111-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 226 bits (575), Expect = 8.27e-74
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 0


Query: 2   DDPELEAIRQRRMQELMAQRGGGSQNNPEQQKAQEEAKSEAEERRQMMLSQILSMQARER 61
           DDPELEAIRQRRMQELMAQRGGGSQNNPEQQKAQEEAKSEAEERRQMMLSQILSMQARER
Sbjct: 8   DDPELEAIRQRRMQELMAQRGGGSQNNPEQQKAQEEAKSEAEERRQMMLSQILSMQARER 67

Query: 62  LARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRR 121
           LARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRR
Sbjct: 68  LARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRR 127

Query: 122 SVLDDDD 128
           SVLDDDD
Sbjct: 128 SVLDDDD 134

[Close]

BLAST of Cp4.1LG10g05770 vs. NCBI nr
Match: XP_022925642.1 (DNA-binding protein DDB_G0278111-like isoform X2 [Cucurbita moschata] >XP_022978919.1 DNA-binding protein DDB_G0278111-like isoform X2 [Cucurbita maxima] >KAG6581408.1 Programmed cell death protein 5, partial [Cucurbita argyrosperma subsp. sororia] >KAG7034694.1 Programmed cell death protein 5 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 224 bits (571), Expect = 2.76e-73
Identity = 127/128 (99.22%), Postives = 127/128 (99.22%), Query Frame = 0


Query: 1   MDDPELEAIRQRRMQELMAQRGGGSQNNPEQQKAQEEAKSEAEERRQMMLSQILSMQARE 60
           MDDPELEAIRQRRMQELMAQRG GSQNNPEQQKAQEEAKSEAEERRQMMLSQILSMQARE
Sbjct: 1   MDDPELEAIRQRRMQELMAQRGVGSQNNPEQQKAQEEAKSEAEERRQMMLSQILSMQARE 60

Query: 61  RLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRR 120
           RLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRR
Sbjct: 61  RLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRR 120

Query: 121 RSVLDDDD 128
           RSVLDDDD
Sbjct: 121 RSVLDDDD 128

[Close]

BLAST of Cp4.1LG10g05770 vs. NCBI nr
Match: XP_022925641.1 (DNA-binding protein DDB_G0278111-like isoform X1 [Cucurbita moschata] >XP_022978918.1 DNA-binding protein DDB_G0278111-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 222 bits (566), Expect = 1.95e-72
Identity = 126/127 (99.21%), Postives = 126/127 (99.21%), Query Frame = 0


Query: 2   DDPELEAIRQRRMQELMAQRGGGSQNNPEQQKAQEEAKSEAEERRQMMLSQILSMQARER 61
           DDPELEAIRQRRMQELMAQRG GSQNNPEQQKAQEEAKSEAEERRQMMLSQILSMQARER
Sbjct: 8   DDPELEAIRQRRMQELMAQRGVGSQNNPEQQKAQEEAKSEAEERRQMMLSQILSMQARER 67

Query: 62  LARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRR 121
           LARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRR
Sbjct: 68  LARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRR 127

Query: 122 SVLDDDD 128
           SVLDDDD
Sbjct: 128 SVLDDDD 134

[Close]

BLAST of Cp4.1LG10g05770 vs. NCBI nr
Match: XP_038881892.1 (DNA-binding protein DDB_G0278111 [Benincasa hispida] >XP_038881893.1 DNA-binding protein DDB_G0278111 [Benincasa hispida])

HSP 1 Score: 221 bits (564), Expect = 3.23e-72
Identity = 125/128 (97.66%), Postives = 127/128 (99.22%), Query Frame = 0


Query: 1   MDDPELEAIRQRRMQELMAQRGGGSQNNPEQQKAQEEAKSEAEERRQMMLSQILSMQARE 60
           MDDPELEAIRQRRMQELMAQRG GSQNNPEQQKAQEEA+SEAEERRQMMLSQILSMQARE
Sbjct: 1   MDDPELEAIRQRRMQELMAQRGMGSQNNPEQQKAQEEARSEAEERRQMMLSQILSMQARE 60

Query: 61  RLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRR 120
           RLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRR
Sbjct: 61  RLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRR 120

Query: 121 RSVLDDDD 128
           RSVL+DDD
Sbjct: 121 RSVLEDDD 128

[Close]

BLAST of Cp4.1LG10g05770 vs. ExPASy TrEMBL
Match: A0A6J1IVC3 (DNA-binding protein DDB_G0278111-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111478726 PE=3 SV=1)

HSP 1 Score: 224 bits (571), Expect = 1.34e-73
Identity = 127/128 (99.22%), Postives = 127/128 (99.22%), Query Frame = 0


Query: 1   MDDPELEAIRQRRMQELMAQRGGGSQNNPEQQKAQEEAKSEAEERRQMMLSQILSMQARE 60
           MDDPELEAIRQRRMQELMAQRG GSQNNPEQQKAQEEAKSEAEERRQMMLSQILSMQARE
Sbjct: 1   MDDPELEAIRQRRMQELMAQRGVGSQNNPEQQKAQEEAKSEAEERRQMMLSQILSMQARE 60

Query: 61  RLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRR 120
           RLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRR
Sbjct: 61  RLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRR 120

Query: 121 RSVLDDDD 128
           RSVLDDDD
Sbjct: 121 RSVLDDDD 128

[Close]

BLAST of Cp4.1LG10g05770 vs. ExPASy TrEMBL
Match: A0A6J1EC84 (DNA-binding protein DDB_G0278111-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111432996 PE=3 SV=1)

HSP 1 Score: 224 bits (571), Expect = 1.34e-73
Identity = 127/128 (99.22%), Postives = 127/128 (99.22%), Query Frame = 0


Query: 1   MDDPELEAIRQRRMQELMAQRGGGSQNNPEQQKAQEEAKSEAEERRQMMLSQILSMQARE 60
           MDDPELEAIRQRRMQELMAQRG GSQNNPEQQKAQEEAKSEAEERRQMMLSQILSMQARE
Sbjct: 1   MDDPELEAIRQRRMQELMAQRGVGSQNNPEQQKAQEEAKSEAEERRQMMLSQILSMQARE 60

Query: 61  RLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRR 120
           RLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRR
Sbjct: 61  RLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRR 120

Query: 121 RSVLDDDD 128
           RSVLDDDD
Sbjct: 121 RSVLDDDD 128

[Close]

BLAST of Cp4.1LG10g05770 vs. ExPASy TrEMBL
Match: A0A6J1IUM6 (DNA-binding protein DDB_G0278111-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111478726 PE=3 SV=1)

HSP 1 Score: 222 bits (566), Expect = 9.44e-73
Identity = 126/127 (99.21%), Postives = 126/127 (99.21%), Query Frame = 0


Query: 2   DDPELEAIRQRRMQELMAQRGGGSQNNPEQQKAQEEAKSEAEERRQMMLSQILSMQARER 61
           DDPELEAIRQRRMQELMAQRG GSQNNPEQQKAQEEAKSEAEERRQMMLSQILSMQARER
Sbjct: 8   DDPELEAIRQRRMQELMAQRGVGSQNNPEQQKAQEEAKSEAEERRQMMLSQILSMQARER 67

Query: 62  LARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRR 121
           LARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRR
Sbjct: 68  LARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRR 127

Query: 122 SVLDDDD 128
           SVLDDDD
Sbjct: 128 SVLDDDD 134

[Close]

BLAST of Cp4.1LG10g05770 vs. ExPASy TrEMBL
Match: A0A6J1ECS1 (DNA-binding protein DDB_G0278111-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111432996 PE=3 SV=1)

HSP 1 Score: 222 bits (566), Expect = 9.44e-73
Identity = 126/127 (99.21%), Postives = 126/127 (99.21%), Query Frame = 0


Query: 2   DDPELEAIRQRRMQELMAQRGGGSQNNPEQQKAQEEAKSEAEERRQMMLSQILSMQARER 61
           DDPELEAIRQRRMQELMAQRG GSQNNPEQQKAQEEAKSEAEERRQMMLSQILSMQARER
Sbjct: 8   DDPELEAIRQRRMQELMAQRGVGSQNNPEQQKAQEEAKSEAEERRQMMLSQILSMQARER 67

Query: 62  LARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRR 121
           LARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRR
Sbjct: 68  LARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRRR 127

Query: 122 SVLDDDD 128
           SVLDDDD
Sbjct: 128 SVLDDDD 134

[Close]

BLAST of Cp4.1LG10g05770 vs. ExPASy TrEMBL
Match: A0A6J1KTQ8 (DNA-binding protein DDB_G0278111-like OS=Cucurbita maxima OX=3661 GN=LOC111497139 PE=3 SV=1)

HSP 1 Score: 219 bits (559), Expect = 9.04e-72
Identity = 124/128 (96.88%), Postives = 127/128 (99.22%), Query Frame = 0


Query: 1   MDDPELEAIRQRRMQELMAQRGGGSQNNPEQQKAQEEAKSEAEERRQMMLSQILSMQARE 60
           MDDPELEAIRQRRMQELMAQRG GSQ+NPEQQKAQEEAKSEAEERRQMMLSQILSMQARE
Sbjct: 1   MDDPELEAIRQRRMQELMAQRGMGSQSNPEQQKAQEEAKSEAEERRQMMLSQILSMQARE 60

Query: 61  RLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRR 120
           RLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEE+LITLLEQINNQTTKQTKVTIQRR
Sbjct: 61  RLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEEKLITLLEQINNQTTKQTKVTIQRR 120

Query: 121 RSVLDDDD 128
           RSVL+DDD
Sbjct: 121 RSVLEDDD 128

[Close]

BLAST of Cp4.1LG10g05770 vs. TAIR 10
Match: AT1G29850.1 (double-stranded DNA-binding family protein )

HSP 1 Score: 182.6 bits (462), Expect = 2.0e-46
Identity = 108/129 (83.72%), Postives = 117/129 (90.70%), Query Frame = 0


Query: 1   MDDPELEAIRQRRMQELMAQRG---GGSQNNPEQQKAQEEAKSEAEERRQMMLSQILSMQ 60
           M DPELEAIRQRRMQELMA++G    G+Q NPEQ+K QE+AK EA+ERRQMMLSQ+LS Q
Sbjct: 1   MADPELEAIRQRRMQELMARQGMGKQGNQQNPEQEKQQEDAKREADERRQMMLSQVLSSQ 60

Query: 61  ARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTI 120
           ARER+ARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQIN+QTTKQTKVT 
Sbjct: 61  ARERIARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINSQTTKQTKVTY 120

Query: 121 QRRRSVLDD 127
           QRRR V DD
Sbjct: 121 QRRRGVDDD 129

[Close]

BLAST of Cp4.1LG10g05770 vs. TAIR 10
Match: AT1G29850.2 (double-stranded DNA-binding family protein )

HSP 1 Score: 182.2 bits (461), Expect = 2.7e-46
Identity = 108/130 (83.08%), Postives = 117/130 (90.00%), Query Frame = 0


Query: 1   MDDPELEAIRQRRMQELMAQRG----GGSQNNPEQQKAQEEAKSEAEERRQMMLSQILSM 60
           M DPELEAIRQRRMQELMA++G     G+Q NPEQ+K QE+AK EA+ERRQMMLSQ+LS 
Sbjct: 1   MADPELEAIRQRRMQELMARQGMQGKQGNQQNPEQEKQQEDAKREADERRQMMLSQVLSS 60

Query: 61  QARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVT 120
           QARER+ARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQIN+QTTKQTKVT
Sbjct: 61  QARERIARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINSQTTKQTKVT 120

Query: 121 IQRRRSVLDD 127
            QRRR V DD
Sbjct: 121 YQRRRGVDDD 130

[Close]

BLAST of Cp4.1LG10g05770 vs. TAIR 10
Match: AT1G29850.3 (double-stranded DNA-binding family protein )

HSP 1 Score: 172.9 bits (437), Expect = 1.6e-43
Identity = 102/126 (80.95%), Postives = 113/126 (89.68%), Query Frame = 0


Query: 1   MDDPELEAIRQRRMQELMAQRG---GGSQNNPEQQKAQEEAKSEAEERRQMMLSQILSMQ 60
           M DPELEAIRQRRMQELMA++G    G+Q NPEQ+K QE+AK EA+ERRQMMLSQ+LS Q
Sbjct: 1   MADPELEAIRQRRMQELMARQGMGKQGNQQNPEQEKQQEDAKREADERRQMMLSQVLSSQ 60

Query: 61  ARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTI 120
           ARER+ARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQIN+QTTKQTKVT+
Sbjct: 61  ARERIARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINSQTTKQTKVTV 120

Query: 121 QRRRSV 124
               +V
Sbjct: 121 STNGAV 126

The following BLAST results are available for this feature:

BLAST of Cp4.1LG10g05770 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q54YS0	1.9e-17	50.88	DNA-binding protein DDB_G0278111 OS=Dictyostelium discoideum OX=44689 GN=DDB_G02...	[more]
O14737	3.7e-16	42.97	Programmed cell death protein 5 OS=Homo sapiens OX=9606 GN=PDCD5 PE=1 SV=3	[more]
P56812	3.7e-16	42.97	Programmed cell death protein 5 OS=Mus musculus OX=10090 GN=Pdcd5 PE=1 SV=3	[more]
Q5RBT0	3.7e-16	42.97	Programmed cell death protein 5 OS=Pongo abelii OX=9601 GN=PDCD5 PE=2 SV=3	[more]
Q2HJH9	1.4e-15	42.19	Programmed cell death protein 5 OS=Bos taurus OX=9913 GN=PDCD5 PE=2 SV=3	[more]

BLAST of Cp4.1LG10g05770 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023543163.1	1.17e-74	100.00	DNA-binding protein DDB_G0278111-like isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_023543162.1	8.27e-74	100.00	DNA-binding protein DDB_G0278111-like isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_022925642.1	2.76e-73	99.22	DNA-binding protein DDB_G0278111-like isoform X2 [Cucurbita moschata] >XP_022978...	[more]
XP_022925641.1	1.95e-72	99.21	DNA-binding protein DDB_G0278111-like isoform X1 [Cucurbita moschata] >XP_022978...	[more]
XP_038881892.1	3.23e-72	97.66	DNA-binding protein DDB_G0278111 [Benincasa hispida] >XP_038881893.1 DNA-binding...	[more]

BLAST of Cp4.1LG10g05770 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IVC3	1.34e-73	99.22	DNA-binding protein DDB_G0278111-like isoform X2 OS=Cucurbita maxima OX=3661 GN=...	[more]
A0A6J1EC84	1.34e-73	99.22	DNA-binding protein DDB_G0278111-like isoform X2 OS=Cucurbita moschata OX=3662 G...	[more]
A0A6J1IUM6	9.44e-73	99.21	DNA-binding protein DDB_G0278111-like isoform X1 OS=Cucurbita maxima OX=3661 GN=...	[more]
A0A6J1ECS1	9.44e-73	99.21	DNA-binding protein DDB_G0278111-like isoform X1 OS=Cucurbita moschata OX=3662 G...	[more]
A0A6J1KTQ8	9.04e-72	96.88	DNA-binding protein DDB_G0278111-like OS=Cucurbita maxima OX=3661 GN=LOC11149713...	[more]

BLAST of Cp4.1LG10g05770 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G29850.1	2.0e-46	83.72	double-stranded DNA-binding family protein	[more]
AT1G29850.2	2.7e-46	83.08	double-stranded DNA-binding family protein	[more]
AT1G29850.3	1.6e-43	80.95	double-stranded DNA-binding family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002836	PDCD5-like	PFAM	PF01984	dsDNA_bind	coord: 9..120 e-value: 1.2E-31 score: 109.3
IPR002836	PDCD5-like	PIRSF	PIRSF015730	TFAR19	coord: 1..128 e-value: 1.2E-38 score: 130.1
IPR002836	PDCD5-like	PANTHER	PTHR10840	PROGRAMMED CELL DEATH PROTEIN 5	coord: 1..126
IPR036883	PDCD5-like superfamily	GENE3D	1.10.8.140		coord: 2..110 e-value: 6.5E-35 score: 121.4
IPR036883	PDCD5-like superfamily	SUPERFAMILY	46950	Double-stranded DNA-binding domain	coord: 9..117
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..46
None	No IPR available	PANTHER	PTHR10840:SF3	BNAA07G07610D PROTEIN	coord: 1..126

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG10g05770.1	Cp4.1LG10g05770.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding