Cp4.1LG10g04600 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG10g04600
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Descriptiontranscription factor TCP11-like
LocationCp4.1LG10: 1349301 .. 1349543 (-)
RNA-Seq ExpressionCp4.1LG10g04600
SyntenyCp4.1LG10g04600
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCTCGTCCGGTCCGTCCGTTTCTTGTCGGGTTCAGTCGGTGGGGGTTGCCGCCGATGAGCAGGGGATGTTCGCGATGCCACCGCCGAGCTGCCGTCTGGATTTATGCCAGCCGGTGGGGTTGGACTACTCTGCCGCGGGCAATGATTATCGCCACATGCCGTTTACGGCGCTACTGTTGCAGCCGTCGACGGCAGACGAGGCGGAGGAGAGACAGGAGGAGGAGGTCTTCAGAGAATAA

mRNA sequence

ATGGCCTCGTCCGGTCCGTCCGTTTCTTGTCGGGTTCAGTCGGTGGGGGTTGCCGCCGATGAGCAGGGGATGTTCGCGATGCCACCGCCGAGCTGCCGTCTGGATTTATGCCAGCCGGTGGGGTTGGACTACTCTGCCGCGGGCAATGATTATCGCCACATGCCGTTTACGGCGCTACTGTTGCAGCCGTCGACGGCAGACGAGGCGGAGGAGAGACAGGAGGAGGAGGTCTTCAGAGAATAA

Coding sequence (CDS)

ATGGCCTCGTCCGGTCCGTCCGTTTCTTGTCGGGTTCAGTCGGTGGGGGTTGCCGCCGATGAGCAGGGGATGTTCGCGATGCCACCGCCGAGCTGCCGTCTGGATTTATGCCAGCCGGTGGGGTTGGACTACTCTGCCGCGGGCAATGATTATCGCCACATGCCGTTTACGGCGCTACTGTTGCAGCCGTCGACGGCAGACGAGGCGGAGGAGAGACAGGAGGAGGAGGTCTTCAGAGAATAA

Protein sequence

MASSGPSVSCRVQSVGVAADEQGMFAMPPPSCRLDLCQPVGLDYSAAGNDYRHMPFTALLLQPSTADEAEERQEEEVFRE
Homology
[Close]
BLAST of Cp4.1LG10g04600 vs. ExPASy Swiss-Prot
Match: Q9SJK7 (Transcription factor TCP11 OS=Arabidopsis thaliana OX=3702 GN=TCP11 PE=1 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 3.9e-08
Identity = 29/50 (58.00%), Postives = 34/50 (68.00%), Query Frame = 0 

Query: 30  PSCRLDLCQPVGLDYSAAGNDYRHMPFTALLLQPSTA---DEAEERQEEE 77
           PSCRLDLCQP+G+ Y    N Y HMPFTA+LL+P T     E E  +EEE
Sbjct: 135 PSCRLDLCQPIGIQYPV--NGYSHMPFTAMLLEPMTTTAESEVEIAEEEE 182

[Close]
BLAST of Cp4.1LG10g04600 vs. NCBI nr
Match: XP_023543697.1 (transcription factor TCP11-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 161 bits (408), Expect = 3.18e-48
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0 

Query: 1   MASSGPSVSCRVQSVGVAADEQGMFAMPPPSCRLDLCQPVGLDYSAAGNDYRHMPFTALL 60
           MASSGPSVSCRVQSVGVAADEQGMFAMPPPSCRLDLCQPVGLDYSAAGNDYRHMPFTALL
Sbjct: 129 MASSGPSVSCRVQSVGVAADEQGMFAMPPPSCRLDLCQPVGLDYSAAGNDYRHMPFTALL 188

Query: 61  LQPSTADEAEERQEEEVFRE 80
           LQPSTADEAEERQEEEVFRE
Sbjct: 189 LQPSTADEAEERQEEEVFRE 208

[Close]
BLAST of Cp4.1LG10g04600 vs. NCBI nr
Match: KAG6604408.1 (Transcription factor TCP11, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 156 bits (394), Expect = 4.23e-46
Identity = 78/80 (97.50%), Postives = 78/80 (97.50%), Query Frame = 0 

Query: 1   MASSGPSVSCRVQSVGVAADEQGMFAMPPPSCRLDLCQPVGLDYSAAGNDYRHMPFTALL 60
           MASS PSVSCRVQSVGVAADEQGMFAMP PSCRLDLCQPVGLDYSAAGNDYRHMPFTALL
Sbjct: 129 MASSAPSVSCRVQSVGVAADEQGMFAMPTPSCRLDLCQPVGLDYSAAGNDYRHMPFTALL 188

Query: 61  LQPSTADEAEERQEEEVFRE 80
           LQPSTADEAEERQEEEVFRE
Sbjct: 189 LQPSTADEAEERQEEEVFRE 208

[Close]
BLAST of Cp4.1LG10g04600 vs. NCBI nr
Match: XP_022926085.1 (transcription factor TCP11-like [Cucurbita moschata] >KAG7034559.1 Transcription factor TCP11, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 155 bits (392), Expect = 8.50e-46
Identity = 78/80 (97.50%), Postives = 78/80 (97.50%), Query Frame = 0 

Query: 1   MASSGPSVSCRVQSVGVAADEQGMFAMPPPSCRLDLCQPVGLDYSAAGNDYRHMPFTALL 60
           MASS  SVSCRVQSVGVAADEQGMFAMPPPSCRLDLCQPVGLDYSAAGNDYRHMPFTALL
Sbjct: 129 MASSALSVSCRVQSVGVAADEQGMFAMPPPSCRLDLCQPVGLDYSAAGNDYRHMPFTALL 188

Query: 61  LQPSTADEAEERQEEEVFRE 80
           LQPSTADEAEERQEEEVFRE
Sbjct: 189 LQPSTADEAEERQEEEVFRE 208

[Close]
BLAST of Cp4.1LG10g04600 vs. NCBI nr
Match: XP_022978800.1 (transcription factor TCP11-like [Cucurbita maxima])

HSP 1 Score: 146 bits (368), Expect = 3.49e-42
Identity = 76/80 (95.00%), Postives = 76/80 (95.00%), Query Frame = 0 

Query: 1   MASSGPSVSCRVQSVGVAADEQGMFAMPPPSCRLDLCQPVGLDYSAAGNDYRHMPFTALL 60
           MASS PSVSCRVQSVGVAADEQGMFAMP  SCRLDLCQPVGLDYSAAGNDYRHMPFTALL
Sbjct: 129 MASSAPSVSCRVQSVGVAADEQGMFAMP--SCRLDLCQPVGLDYSAAGNDYRHMPFTALL 188

Query: 61  LQPSTADEAEERQEEEVFRE 80
           LQPSTADEAEERQE EVFRE
Sbjct: 189 LQPSTADEAEERQEGEVFRE 206

[Close]
BLAST of Cp4.1LG10g04600 vs. NCBI nr
Match: XP_004143267.1 (transcription factor TCP11 [Cucumis sativus] >KAE8647403.1 hypothetical protein Csa_003031 [Cucumis sativus])

HSP 1 Score: 139 bits (351), Expect = 1.35e-39
Identity = 69/80 (86.25%), Postives = 72/80 (90.00%), Query Frame = 0 

Query: 1   MASSGPSVSCRVQSVGVAADEQGMFAMPPPSCRLDLCQPVGLDYSAAGNDYRHMPFTALL 60
           MASSG SVSCRVQ V V    QGMFAMPPPSCRLDLCQPVG++YSAAGNDYRHMPFTALL
Sbjct: 128 MASSGRSVSCRVQPVTVGGSGQGMFAMPPPSCRLDLCQPVGMEYSAAGNDYRHMPFTALL 187

Query: 61  LQPSTADEAEERQEEEVFRE 80
           LQPSTA+E EERQEEEVFRE
Sbjct: 188 LQPSTAEETEERQEEEVFRE 207

[Close]
BLAST of Cp4.1LG10g04600 vs. ExPASy TrEMBL
Match: A0A6J1EK07 (transcription factor TCP11-like OS=Cucurbita moschata OX=3662 GN=LOC111433306 PE=4 SV=1)

HSP 1 Score: 155 bits (392), Expect = 4.12e-46
Identity = 78/80 (97.50%), Postives = 78/80 (97.50%), Query Frame = 0 

Query: 1   MASSGPSVSCRVQSVGVAADEQGMFAMPPPSCRLDLCQPVGLDYSAAGNDYRHMPFTALL 60
           MASS  SVSCRVQSVGVAADEQGMFAMPPPSCRLDLCQPVGLDYSAAGNDYRHMPFTALL
Sbjct: 129 MASSALSVSCRVQSVGVAADEQGMFAMPPPSCRLDLCQPVGLDYSAAGNDYRHMPFTALL 188

Query: 61  LQPSTADEAEERQEEEVFRE 80
           LQPSTADEAEERQEEEVFRE
Sbjct: 189 LQPSTADEAEERQEEEVFRE 208

[Close]
BLAST of Cp4.1LG10g04600 vs. ExPASy TrEMBL
Match: A0A6J1IR93 (transcription factor TCP11-like OS=Cucurbita maxima OX=3661 GN=LOC111478656 PE=4 SV=1)

HSP 1 Score: 146 bits (368), Expect = 1.69e-42
Identity = 76/80 (95.00%), Postives = 76/80 (95.00%), Query Frame = 0 

Query: 1   MASSGPSVSCRVQSVGVAADEQGMFAMPPPSCRLDLCQPVGLDYSAAGNDYRHMPFTALL 60
           MASS PSVSCRVQSVGVAADEQGMFAMP  SCRLDLCQPVGLDYSAAGNDYRHMPFTALL
Sbjct: 129 MASSAPSVSCRVQSVGVAADEQGMFAMP--SCRLDLCQPVGLDYSAAGNDYRHMPFTALL 188

Query: 61  LQPSTADEAEERQEEEVFRE 80
           LQPSTADEAEERQE EVFRE
Sbjct: 189 LQPSTADEAEERQEGEVFRE 206

[Close]
BLAST of Cp4.1LG10g04600 vs. ExPASy TrEMBL
Match: A0A5D3C791 (Transcription factor TCP11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold202G00190 PE=4 SV=1)

HSP 1 Score: 135 bits (340), Expect = 3.03e-38
Identity = 65/80 (81.25%), Postives = 71/80 (88.75%), Query Frame = 0 

Query: 1   MASSGPSVSCRVQSVGVAADEQGMFAMPPPSCRLDLCQPVGLDYSAAGNDYRHMPFTALL 60
           MASSG SVSCR+Q V V    QGMF++PPPSCRLDLCQPVG++YSAAGNDYRHMPFTALL
Sbjct: 128 MASSGRSVSCRIQPVTVGGSGQGMFSLPPPSCRLDLCQPVGMEYSAAGNDYRHMPFTALL 187

Query: 61  LQPSTADEAEERQEEEVFRE 80
           LQPST +E EERQEEEVFRE
Sbjct: 188 LQPSTGEETEERQEEEVFRE 207

[Close]
BLAST of Cp4.1LG10g04600 vs. ExPASy TrEMBL
Match: A0A0A0KH86 (TCP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G446400 PE=4 SV=1)

HSP 1 Score: 135 bits (340), Expect = 4.95e-38
Identity = 66/78 (84.62%), Postives = 70/78 (89.74%), Query Frame = 0 

Query: 1   MASSGPSVSCRVQSVGVAADEQGMFAMPPPSCRLDLCQPVGLDYSAAGNDYRHMPFTALL 60
           MASSG SVSCRVQ V V    QGMFAMPPPSCRLDLCQPVG++YSAAGNDYRHMPFTALL
Sbjct: 128 MASSGRSVSCRVQPVTVGGSGQGMFAMPPPSCRLDLCQPVGMEYSAAGNDYRHMPFTALL 187

Query: 61  LQPSTADEAEERQEEEVF 78
           LQPSTA+E EERQEEE+F
Sbjct: 188 LQPSTAEETEERQEEELF 205

[Close]
BLAST of Cp4.1LG10g04600 vs. ExPASy TrEMBL
Match: A0A1S3CGZ3 (uncharacterized protein LOC103500811 OS=Cucumis melo OX=3656 GN=LOC103500811 PE=4 SV=1)

HSP 1 Score: 136 bits (343), Expect = 1.87e-37
Identity = 66/80 (82.50%), Postives = 71/80 (88.75%), Query Frame = 0 

Query: 1   MASSGPSVSCRVQSVGVAADEQGMFAMPPPSCRLDLCQPVGLDYSAAGNDYRHMPFTALL 60
           MASSG SVSCR+Q V V    QGMF+MPPPSCRLDLCQPVG++YSAAGNDYRHMPFTALL
Sbjct: 243 MASSGRSVSCRIQPVTVGGSGQGMFSMPPPSCRLDLCQPVGMEYSAAGNDYRHMPFTALL 302

Query: 61  LQPSTADEAEERQEEEVFRE 80
           LQPST +E EERQEEEVFRE
Sbjct: 303 LQPSTGEETEERQEEEVFRE 322

[Close]
BLAST of Cp4.1LG10g04600 vs. TAIR 10
Match: AT2G37000.1 (TCP family transcription factor )

HSP 1 Score: 58.5 bits (140), Expect = 2.8e-09
Identity = 29/50 (58.00%), Postives = 34/50 (68.00%), Query Frame = 0 

Query: 30  PSCRLDLCQPVGLDYSAAGNDYRHMPFTALLLQPSTA---DEAEERQEEE 77
           PSCRLDLCQP+G+ Y    N Y HMPFTA+LL+P T     E E  +EEE
Sbjct: 135 PSCRLDLCQPIGIQYPV--NGYSHMPFTAMLLEPMTTTAESEVEIAEEEE 182

The following BLAST results are available for this feature:
BLAST of Cp4.1LG10g04600 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9SJK73.9e-0858.00Transcription factor TCP11 OS=Arabidopsis thaliana OX=3702 GN=TCP11 PE=1 SV=1[more]
BLAST of Cp4.1LG10g04600 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023543697.13.18e-48100.00transcription factor TCP11-like [Cucurbita pepo subsp. pepo][more]
KAG6604408.14.23e-4697.50Transcription factor TCP11, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_022926085.18.50e-4697.50transcription factor TCP11-like [Cucurbita moschata] >KAG7034559.1 Transcription... [more]
XP_022978800.13.49e-4295.00transcription factor TCP11-like [Cucurbita maxima][more]
XP_004143267.11.35e-3986.25transcription factor TCP11 [Cucumis sativus] >KAE8647403.1 hypothetical protein ... [more]
BLAST of Cp4.1LG10g04600 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1EK074.12e-4697.50transcription factor TCP11-like OS=Cucurbita moschata OX=3662 GN=LOC111433306 PE... [more]
A0A6J1IR931.69e-4295.00transcription factor TCP11-like OS=Cucurbita maxima OX=3661 GN=LOC111478656 PE=4... [more]
A0A5D3C7913.03e-3881.25Transcription factor TCP11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
A0A0A0KH864.95e-3884.62TCP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G446400 PE=4 SV... [more]
A0A1S3CGZ31.87e-3782.50uncharacterized protein LOC103500811 OS=Cucumis melo OX=3656 GN=LOC103500811 PE=... [more]
BLAST of Cp4.1LG10g04600 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G37000.12.8e-0958.00TCP family transcription factor [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG10g04600.1Cp4.1LG10g04600.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
molecular_function GO:0003700 DNA-binding transcription factor activity
molecular_function GO:0043565 sequence-specific DNA binding