Cp4.1LG07g08550 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG07g08550
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Unknown protein
Location	Cp4.1LG07: 7709370 .. 7709615 (-)
RNA-Seq Expression	Cp4.1LG07g08550
Synteny	Cp4.1LG07g08550

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGACTAAGGCGACGGATTCGAAGGCGGTCATGACGGACCAGACGAGGTCGTCGACAACCGGAGTGTTGAGAAGGCCGCGAGGCAAACGGCGAAACCAGGCGGAGCTCCAGTTCCATGAGAAAAGCGAGGAGAGGACATCGGTCCACCGGAATATGGAAGATCTGATGGAAAATTCGAATTCCGGCCACCGGAATGCCGATCTCGATGAACTTCCCGCCATTGCTGCTTCTTCGACTCCTTGA

mRNA sequence

ATGGAGACTAAGGCGACGGATTCGAAGGCGGTCATGACGGACCAGACGAGGTCGTCGACAACCGGAGTGTTGAGAAGGCCGCGAGGCAAACGGCGAAACCAGGCGGAGCTCCAGTTCCATGAGAAAAGCGAGGAGAGGACATCGGTCCACCGGAATATGGAAGATCTGATGGAAAATTCGAATTCCGGCCACCGGAATGCCGATCTCGATGAACTTCCCGCCATTGCTGCTTCTTCGACTCCTTGA

Coding sequence (CDS)

ATGGAGACTAAGGCGACGGATTCGAAGGCGGTCATGACGGACCAGACGAGGTCGTCGACAACCGGAGTGTTGAGAAGGCCGCGAGGCAAACGGCGAAACCAGGCGGAGCTCCAGTTCCATGAGAAAAGCGAGGAGAGGACATCGGTCCACCGGAATATGGAAGATCTGATGGAAAATTCGAATTCCGGCCACCGGAATGCCGATCTCGATGAACTTCCCGCCATTGCTGCTTCTTCGACTCCTTGA

Protein sequence

METKATDSKAVMTDQTRSSTTGVLRRPRGKRRNQAELQFHEKSEERTSVHRNMEDLMENSNSGHRNADLDELPAIAASSTP

Homology

[Close]

BLAST of Cp4.1LG07g08550 vs. NCBI nr
Match: KAA0048079.1 (hypothetical protein E6C27_scaffold385G001510 [Cucumis melo var. makuwa])

HSP 1 Score: 106 bits (265), Expect = 4.84e-28
Identity = 62/81 (76.54%), Postives = 69/81 (85.19%), Query Frame = 0


Query: 1  METKATDSKAVMTDQTRSSTTGVLRRPRGKRRNQAE-LQFHEKSEERTSVHRNMEDLMEN 60
          METKATDSKAV+TDQ  SST  +LRRPR +RRNQAE LQFHEKSEER SVHRNMEDL EN
Sbjct: 1  METKATDSKAVVTDQRTSSTMEMLRRPRRQRRNQAEELQFHEKSEERRSVHRNMEDLKEN 60

Query: 61 SNSGHRNADLDELPAIAASST 80
          SNS  RNADL ++PAIA S++
Sbjct: 61 SNSVQRNADLGDVPAIALSAS 81

[Close]

BLAST of Cp4.1LG07g08550 vs. ExPASy TrEMBL
Match: A0A5A7U3P7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold385G001510 PE=4 SV=1)

HSP 1 Score: 106 bits (265), Expect = 2.34e-28
Identity = 62/81 (76.54%), Postives = 69/81 (85.19%), Query Frame = 0


Query: 1  METKATDSKAVMTDQTRSSTTGVLRRPRGKRRNQAE-LQFHEKSEERTSVHRNMEDLMEN 60
          METKATDSKAV+TDQ  SST  +LRRPR +RRNQAE LQFHEKSEER SVHRNMEDL EN
Sbjct: 1  METKATDSKAVVTDQRTSSTMEMLRRPRRQRRNQAEELQFHEKSEERRSVHRNMEDLKEN 60

Query: 61 SNSGHRNADLDELPAIAASST 80
          SNS  RNADL ++PAIA S++
Sbjct: 61 SNSVQRNADLGDVPAIALSAS 81

[Close]

BLAST of Cp4.1LG07g08550 vs. ExPASy TrEMBL
Match: A0A0A0LGJ2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G034630 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.39e-10
Identity = 36/48 (75.00%), Postives = 40/48 (83.33%), Query Frame = 0


Query: 1  METKATDSKAVMTDQTRSSTTGVLRRPRGKRRNQAE-LQFHEKSEERT 47
          METKATDSKAV+TDQ  SS    LRRPR +RRNQAE +QFHEKSEER+
Sbjct: 1  METKATDSKAVVTDQRTSSIMEKLRRPRRQRRNQAEEVQFHEKSEERS 48

The following BLAST results are available for this feature:

BLAST of Cp4.1LG07g08550 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG07g08550 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0048079.1	4.84e-28	76.54	hypothetical protein E6C27_scaffold385G001510 [Cucumis melo var. makuwa]	[more]

BLAST of Cp4.1LG07g08550 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U3P7	2.34e-28	76.54	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A0A0LGJ2	1.39e-10	75.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G034630 PE=4 SV=1	[more]

BLAST of Cp4.1LG07g08550 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 8..23
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..81
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 29..53

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG07g08550.1	Cp4.1LG07g08550.1	mRNA