Cp4.1LG06g06640 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG06g06640
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Nucleic acid-binding, OB-fold containing protein
Location	Cp4.1LG06: 4154357 .. 4156075 (-)
RNA-Seq Expression	Cp4.1LG06g06640
Synteny	Cp4.1LG06g06640

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGTCGCAAAAAAATCAAAGACGAAAGCAGAATGAAGATGCTATATATACACACACCCACCCTGTAACAACCCACGAGTGACAGCACTAGAAAAAGAGGGAGACAGGAGAAAATTTCGATCGATTTACGCGGATTGGGATCAGGATTTGGCGTGCTGCTGATCTTCGGCTTCGGCATCAATGGCGACGGAAAAATCACCTACGCCGGCATCGAGATCAGGCTTGAGAAAGCCAGTCTTCGTTAAGGTCGAACAGCTCAAGCCTGGCACTAATGGCCACACACTCATCGTCAAGGTCGTTAGCTCCAATACCGTGCTGCAGAAAGGTCGATCGGTGTCACAGCACCTTCGACAGACGCGGATCGCTGAGTGCCTTATTGGAGACGAAACTGGAACCATTTTGTTCACTGCGCGTAATGATCAGGGTATGAATTTTGAAATCTTCCGTTGCTGTTACGCTTTATGTAGTGTTTTTCATGAATTGAGTAGGGAAAATTAGGTGTTGTTGGATCGCAGGTGGGGAGGCTAAATCAATGATTATGTAGATTGGAATGTTTGAACTATGTGCCCTAGAGCGATTATTAAACAATATGGATTGTGAGATAGGGTTTGGCGGATTACCTACATCTTACCGATGCGCTTAAAGGAACTTGAAACTAGAAATATGCATTGATTTTGCTCTACAAAACGTAATTTCATTATCAGTAGCTTGAACTGGATGCGTTAGAATGGCTAGGAAGAATCAAATCCCTGTGGTTTCCTGTTATTGACCATAATCTGCAGCTTGATAAATGAAGATTTGAACTGAAACTGAAGTGTTTGATGTTAATTTCTCACAAATCCCTAGCCCAATCTGCTTCTAGCTGGTCTGCAAACTATTGCCACTTGAATCTCTAGCTTTGAAATGAAATCTCTGCAATGAACTCATTTATCATGTTGTCTTATATGGTTATTTGTTTGCTCAGTTGATCAAGTAAAACCTGGGACAACTATCATTCTTCGAAATGCAAAGATCGACATGTTCAAAGGATCAATGAGGCTCGCAGTCGATAAATGGGGCCGCATCGAGGTCGTCGAGCCCGAAAATTTCGTCGTCAAGGAAGACAATAATCTATCTTTAGTTGAGTATGAACTTGTGAATGTTGCAGAGGAATGAGAAGAATAAGGCCAACTTTATGCATATAATCAATGGACATTGATATCAGTTTCCAGGTAATCTGCTGATGTGAATATATATATAGAACATCGCTATATTATAGTTTTGTATGGGTGAACGAACTGCCCCTTAAGCTCACACACAGTTTTCAATCTGCTGGGCATGTATATTGTATATTCTCGAGTCGTTCTTATCCAACCTGGTTTGTTTATCTTAAAACTTATGGGATCTATTTGATATTTTTGAAATTTAAAGACCGTGATAGCTCAATTGTCTTGATTCGTTGGCTAGTTAACATTTTTGATATTTTATCCTTCGGAGACCTCTGATATAGAGAAGATTAGCATGACCCTTGTGCAAGGATGACATGCACAAATCGAAAAATGGTATAAGAGTCACACATCATGATAGCGAGAACAACACTGGGTCCCAAGGGGAGCGGATTGTGAGGTCCCACTTGGAAAGGGTCTCCTTGGTAGACGCATTTTAAACCCGTGAAGCTGACACCAAAACGGACAATATCTTCTAACAGGCATCTACATGTTAACAATATATGGGTACCAACA

mRNA sequence

TGTCGCAAAAAAATCAAAGACGAAAGCAGAATGAAGATGCTATATATACACACACCCACCCTGTAACAACCCACGAGTGACAGCACTAGAAAAAGAGGGAGACAGGAGAAAATTTCGATCGATTTACGCGGATTGGGATCAGGATTTGGCGTGCTGCTGATCTTCGGCTTCGGCATCAATGGCGACGGAAAAATCACCTACGCCGGCATCGAGATCAGGCTTGAGAAAGCCAGTCTTCGTTAAGGTCGAACAGCTCAAGCCTGGCACTAATGGCCACACACTCATCGTCAAGGTCGTTAGCTCCAATACCGTGCTGCAGAAAGGTCGATCGGTGTCACAGCACCTTCGACAGACGCGGATCGCTGAGTGCCTTATTGGAGACGAAACTGGAACCATTTTGTTCACTGCGCGTAATGATCAGGTTGATCAAGTAAAACCTGGGACAACTATCATTCTTCGAAATGCAAAGATCGACATGTTCAAAGGATCAATGAGGCTCGCAGTCGATAAATGGGGCCGCATCGAGGTCGTCGAGCCCGAAAATTTCGTCGTCAAGGAAGACAATAATCTATCTTTAGTTGAGTATGAACTTGTGAATGTTGCAGAGGAATGAGAAGAATAAGGCCAACTTTATGCATATAATCAATGGACATTGATATCAGTTTCCAGGTAATCTGCTGATGTGAATATATATATAGAACATCGCTATATTATAGTTTTGTATGGGTGAACGAACTGCCCCTTAAGCTCACACACAGTTTTCAATCTGCTGGGCATGTATATTGTATATTCTCGAGTCGTTCTTATCCAACCTGGTTTGTTTATCTTAAAACTTATGGGATCTATTTGATATTTTTGAAATTTAAAGACCGTGATAGCTCAATTGTCTTGATTCGTTGGCTAGTTAACATTTTTGATATTTTATCCTTCGGAGACCTCTGATATAGAGAAGATTAGCATGACCCTTGTGCAAGGATGACATGCACAAATCGAAAAATGGTATAAGAGTCACACATCATGATAGCGAGAACAACACTGGGTCCCAAGGGGAGCGGATTGTGAGGTCCCACTTGGAAAGGGTCTCCTTGGTAGACGCATTTTAAACCCGTGAAGCTGACACCAAAACGGACAATATCTTCTAACAGGCATCTACATGTTAACAATATATGGGTACCAACA

Coding sequence (CDS)

ATGGCGACGGAAAAATCACCTACGCCGGCATCGAGATCAGGCTTGAGAAAGCCAGTCTTCGTTAAGGTCGAACAGCTCAAGCCTGGCACTAATGGCCACACACTCATCGTCAAGGTCGTTAGCTCCAATACCGTGCTGCAGAAAGGTCGATCGGTGTCACAGCACCTTCGACAGACGCGGATCGCTGAGTGCCTTATTGGAGACGAAACTGGAACCATTTTGTTCACTGCGCGTAATGATCAGGTTGATCAAGTAAAACCTGGGACAACTATCATTCTTCGAAATGCAAAGATCGACATGTTCAAAGGATCAATGAGGCTCGCAGTCGATAAATGGGGCCGCATCGAGGTCGTCGAGCCCGAAAATTTCGTCGTCAAGGAAGACAATAATCTATCTTTAGTTGAGTATGAACTTGTGAATGTTGCAGAGGAATGA

Protein sequence

MATEKSPTPASRSGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLIGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVDKWGRIEVVEPENFVVKEDNNLSLVEYELVNVAEE

Homology

[Close]

BLAST of Cp4.1LG06g06640 vs. ExPASy Swiss-Prot
Match: O49453 (Uncharacterized protein At4g28440 OS=Arabidopsis thaliana OX=3702 GN=At4g28440 PE=1 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 4.7e-44
Identity = 91/132 (68.94%), Postives = 105/132 (79.55%), Query Frame = 0


Query: 16  RKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGR------SVSQHLRQTRIAECLIGDE 75
           RKPVFVKVEQLKPGT GHTL VKV+ +N V+   R      S+S+  + +RI ECLIGDE
Sbjct: 18  RKPVFVKVEQLKPGTTGHTLTVKVIEANIVVPVTRKTRPASSLSRPSQPSRIVECLIGDE 77

Query: 76  TGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVDKWGRIEVVEPENFVVKEDN 135
           TG ILFTARNDQVD +KPG T+ILRN++IDMFKG+MRL VDKWGRIE     +F VKEDN
Sbjct: 78  TGCILFTARNDQVDLMKPGATVILRNSRIDMFKGTMRLGVDKWGRIEATGAASFTVKEDN 137

Query: 136 NLSLVEYELVNV 142
           NLSLVEYEL+NV
Sbjct: 138 NLSLVEYELINV 149

[Close]

BLAST of Cp4.1LG06g06640 vs. NCBI nr
Match: XP_023535412.1 (uncharacterized protein At4g28440-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 281 bits (720), Expect = 1.72e-95
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 0


Query: 1   MATEKSPTPASRSGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTR 60
           MATEKSPTPASRSGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTR
Sbjct: 1   MATEKSPTPASRSGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTR 60

Query: 61  IAECLIGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVDKWGRIEVVEP 120
           IAECLIGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVDKWGRIEVVEP
Sbjct: 61  IAECLIGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVDKWGRIEVVEP 120

Query: 121 ENFVVKEDNNLSLVEYELVNVAEE 144
           ENFVVKEDNNLSLVEYELVNVAEE
Sbjct: 121 ENFVVKEDNNLSLVEYELVNVAEE 144

[Close]

BLAST of Cp4.1LG06g06640 vs. NCBI nr
Match: KAG6591934.1 (hypothetical protein SDJN03_14280, partial [Cucurbita argyrosperma subsp. sororia] >KAG7024807.1 hypothetical protein SDJN02_13626 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 281 bits (719), Expect = 2.45e-95
Identity = 143/144 (99.31%), Postives = 144/144 (100.00%), Query Frame = 0


Query: 1   MATEKSPTPASRSGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTR 60
           MATEKSPTPASRSGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTR
Sbjct: 1   MATEKSPTPASRSGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTR 60

Query: 61  IAECLIGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVDKWGRIEVVEP 120
           IAECLIGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVDKWGRIEVVEP
Sbjct: 61  IAECLIGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVDKWGRIEVVEP 120

Query: 121 ENFVVKEDNNLSLVEYELVNVAEE 144
           ENF+VKEDNNLSLVEYELVNVAEE
Sbjct: 121 ENFIVKEDNNLSLVEYELVNVAEE 144

[Close]

BLAST of Cp4.1LG06g06640 vs. NCBI nr
Match: XP_022935733.1 (uncharacterized protein At4g28440-like [Cucurbita moschata])

HSP 1 Score: 281 bits (719), Expect = 2.45e-95
Identity = 143/144 (99.31%), Postives = 144/144 (100.00%), Query Frame = 0


Query: 1   MATEKSPTPASRSGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTR 60
           MATEKSPTPASRSGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTR
Sbjct: 1   MATEKSPTPASRSGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTR 60

Query: 61  IAECLIGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVDKWGRIEVVEP 120
           IAECLIGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVDKWGRIEVVEP
Sbjct: 61  IAECLIGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVDKWGRIEVVEP 120

Query: 121 ENFVVKEDNNLSLVEYELVNVAEE 144
           ENFVVKEDNNLSL+EYELVNVAEE
Sbjct: 121 ENFVVKEDNNLSLIEYELVNVAEE 144

[Close]

BLAST of Cp4.1LG06g06640 vs. NCBI nr
Match: XP_022976598.1 (uncharacterized protein At4g28440-like [Cucurbita maxima])

HSP 1 Score: 270 bits (691), Expect = 4.26e-91
Identity = 138/142 (97.18%), Postives = 140/142 (98.59%), Query Frame = 0


Query: 1   MATEKSPTPASRSGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTR 60
           MATEKSPTPASRSGLRKPVFVKVEQL PGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTR
Sbjct: 1   MATEKSPTPASRSGLRKPVFVKVEQLNPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTR 60

Query: 61  IAECLIGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVDKWGRIEVVEP 120
           IAECLIGDETGTILFTA NDQVDQVKPGTTIILRNAKI+MFKGSMRLAVDKWGRIEVVEP
Sbjct: 61  IAECLIGDETGTILFTALNDQVDQVKPGTTIILRNAKINMFKGSMRLAVDKWGRIEVVEP 120

Query: 121 ENFVVKEDNNLSLVEYELVNVA 142
           +NFVVKEDNNLSLVEYELVNVA
Sbjct: 121 KNFVVKEDNNLSLVEYELVNVA 142

[Close]

BLAST of Cp4.1LG06g06640 vs. NCBI nr
Match: XP_038899654.1 (uncharacterized protein At4g28440-like [Benincasa hispida])

HSP 1 Score: 263 bits (673), Expect = 3.55e-88
Identity = 137/154 (88.96%), Postives = 141/154 (91.56%), Query Frame = 0


Query: 1   MATEKSPTPAS----------RSGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGR 60
           MAT KSPTPAS          R GLRKPVFVK+EQLKPGTNGHTLIVKVVSSNTVLQKGR
Sbjct: 1   MATGKSPTPASQELQQSNAAARPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGR 60

Query: 61  SVSQHLRQTRIAECLIGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVD 120
           SVSQHLRQTRIAECL+GDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVD
Sbjct: 61  SVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVD 120

Query: 121 KWGRIEVVEPENFVVKEDNNLSLVEYELVNVAEE 144
           KWGRIE+ EPE+FVVKEDNNLSLVEYELVNVAEE
Sbjct: 121 KWGRIELAEPEDFVVKEDNNLSLVEYELVNVAEE 154

[Close]

BLAST of Cp4.1LG06g06640 vs. ExPASy TrEMBL
Match: A0A6J1FBC1 (uncharacterized protein At4g28440-like OS=Cucurbita moschata OX=3662 GN=LOC111442557 PE=4 SV=1)

HSP 1 Score: 281 bits (719), Expect = 1.18e-95
Identity = 143/144 (99.31%), Postives = 144/144 (100.00%), Query Frame = 0


Query: 1   MATEKSPTPASRSGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTR 60
           MATEKSPTPASRSGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTR
Sbjct: 1   MATEKSPTPASRSGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTR 60

Query: 61  IAECLIGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVDKWGRIEVVEP 120
           IAECLIGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVDKWGRIEVVEP
Sbjct: 61  IAECLIGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVDKWGRIEVVEP 120

Query: 121 ENFVVKEDNNLSLVEYELVNVAEE 144
           ENFVVKEDNNLSL+EYELVNVAEE
Sbjct: 121 ENFVVKEDNNLSLIEYELVNVAEE 144

[Close]

BLAST of Cp4.1LG06g06640 vs. ExPASy TrEMBL
Match: A0A6J1IMN6 (uncharacterized protein At4g28440-like OS=Cucurbita maxima OX=3661 GN=LOC111476946 PE=4 SV=1)

HSP 1 Score: 270 bits (691), Expect = 2.06e-91
Identity = 138/142 (97.18%), Postives = 140/142 (98.59%), Query Frame = 0


Query: 1   MATEKSPTPASRSGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTR 60
           MATEKSPTPASRSGLRKPVFVKVEQL PGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTR
Sbjct: 1   MATEKSPTPASRSGLRKPVFVKVEQLNPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTR 60

Query: 61  IAECLIGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVDKWGRIEVVEP 120
           IAECLIGDETGTILFTA NDQVDQVKPGTTIILRNAKI+MFKGSMRLAVDKWGRIEVVEP
Sbjct: 61  IAECLIGDETGTILFTALNDQVDQVKPGTTIILRNAKINMFKGSMRLAVDKWGRIEVVEP 120

Query: 121 ENFVVKEDNNLSLVEYELVNVA 142
           +NFVVKEDNNLSLVEYELVNVA
Sbjct: 121 KNFVVKEDNNLSLVEYELVNVA 142

[Close]

BLAST of Cp4.1LG06g06640 vs. ExPASy TrEMBL
Match: A0A5D3DWE0 (Nucleic acid-binding OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G001550 PE=4 SV=1)

HSP 1 Score: 263 bits (672), Expect = 2.44e-88
Identity = 136/154 (88.31%), Postives = 141/154 (91.56%), Query Frame = 0


Query: 1   MATEKSPTPAS----------RSGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGR 60
           MAT KSPTPAS          R GLRKPVFVK+EQLKPGTNGHTLIVKVVSSNTVLQKGR
Sbjct: 1   MATGKSPTPASQELQQTNAAARPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGR 60

Query: 61  SVSQHLRQTRIAECLIGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVD 120
           SVSQHLRQTRIAECL+GDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVD
Sbjct: 61  SVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVD 120

Query: 121 KWGRIEVVEPENFVVKEDNNLSLVEYELVNVAEE 144
           KWGRIE+ +PE+FVVKEDNNLSLVEYELVNVAEE
Sbjct: 121 KWGRIEIADPEDFVVKEDNNLSLVEYELVNVAEE 154

[Close]

BLAST of Cp4.1LG06g06640 vs. ExPASy TrEMBL
Match: A0A1S3CKC4 (uncharacterized protein At4g28440-like OS=Cucumis melo OX=3656 GN=LOC103501787 PE=4 SV=1)

HSP 1 Score: 263 bits (672), Expect = 2.44e-88
Identity = 136/154 (88.31%), Postives = 141/154 (91.56%), Query Frame = 0


Query: 1   MATEKSPTPAS----------RSGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGR 60
           MAT KSPTPAS          R GLRKPVFVK+EQLKPGTNGHTLIVKVVSSNTVLQKGR
Sbjct: 1   MATGKSPTPASQELQQTNAAARPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGR 60

Query: 61  SVSQHLRQTRIAECLIGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVD 120
           SVSQHLRQTRIAECL+GDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVD
Sbjct: 61  SVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVD 120

Query: 121 KWGRIEVVEPENFVVKEDNNLSLVEYELVNVAEE 144
           KWGRIE+ +PE+FVVKEDNNLSLVEYELVNVAEE
Sbjct: 121 KWGRIEIADPEDFVVKEDNNLSLVEYELVNVAEE 154

[Close]

BLAST of Cp4.1LG06g06640 vs. ExPASy TrEMBL
Match: A0A0A0L242 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G629450 PE=4 SV=1)

HSP 1 Score: 262 bits (670), Expect = 4.93e-88
Identity = 136/154 (88.31%), Postives = 141/154 (91.56%), Query Frame = 0


Query: 1   MATEKSPTPAS----------RSGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGR 60
           MAT KSPTPAS          R GLRKPVFVK+EQLKPGTNGHTLIVKVVSSNTVLQKGR
Sbjct: 1   MATGKSPTPASQELQQTNAAPRPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGR 60

Query: 61  SVSQHLRQTRIAECLIGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVD 120
           SVSQHLRQTRIAECL+GDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVD
Sbjct: 61  SVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVD 120

Query: 121 KWGRIEVVEPENFVVKEDNNLSLVEYELVNVAEE 144
           KWGRIE+ +PE+FVVKEDNNLSLVEYELVNVAEE
Sbjct: 121 KWGRIELADPEDFVVKEDNNLSLVEYELVNVAEE 154

[Close]

BLAST of Cp4.1LG06g06640 vs. TAIR 10
Match: AT2G33845.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 193.7 bits (491), Expect = 9.9e-50
Identity = 99/143 (69.23%), Postives = 113/143 (79.02%), Query Frame = 0


Query: 3   TEKSPTPASRSGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQK-GRSVSQHLRQTRI 62
           ++  P   +    +KPVFVKV+QLKPGT+GHTL VKVV  N+V QK G + S HLR  RI
Sbjct: 40  SQNQPPQHTPQEKKKPVFVKVDQLKPGTSGHTLTVKVVDQNSVPQKPGAASSSHLRPARI 99

Query: 63  AECLIGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVDKWGRIEVVEPE 122
           +ECL+GDET  ILFTARNDQV+ +KPG T+ LRNAKIDMFKGSMRLAVDKWGRIE  EP 
Sbjct: 100 SECLVGDETACILFTARNDQVELMKPGATVNLRNAKIDMFKGSMRLAVDKWGRIEATEPA 159

Query: 123 NFVVKEDNNLSLVEYELVNVAEE 145
           +  VKEDNNLSLVEYELVNV EE
Sbjct: 160 DITVKEDNNLSLVEYELVNVVEE 182

[Close]

BLAST of Cp4.1LG06g06640 vs. TAIR 10
Match: AT1G23750.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 191.4 bits (485), Expect = 4.9e-49
Identity = 89/134 (66.42%), Postives = 113/134 (84.33%), Query Frame = 0


Query: 10  ASRSGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLIGDE 69
           ++++GL+KP F KV+QL+PGT+GH + VK+VS+  VLQKGR+     RQ RI+EC++GDE
Sbjct: 4   STKAGLKKPAFTKVDQLRPGTSGHNVNVKIVSTKMVLQKGRADGPQARQLRISECIVGDE 63

Query: 70  TGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVDKWGRIEVVEPENFVVKEDN 129
           TG I+FTARNDQVD +K G+T+ LRNAKIDM+KGSMRLAVDKWGR+EV EP +F VKED 
Sbjct: 64  TGVIVFTARNDQVDLMKEGSTVTLRNAKIDMYKGSMRLAVDKWGRVEVTEPASFKVKEDT 123

Query: 130 NLSLVEYELVNVAE 144
           N+SL+EYELVNV E
Sbjct: 124 NMSLIEYELVNVVE 137

[Close]

BLAST of Cp4.1LG06g06640 vs. TAIR 10
Match: AT4G28440.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 178.7 bits (452), Expect = 3.3e-45
Identity = 91/132 (68.94%), Postives = 105/132 (79.55%), Query Frame = 0


Query: 16  RKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGR------SVSQHLRQTRIAECLIGDE 75
           RKPVFVKVEQLKPGT GHTL VKV+ +N V+   R      S+S+  + +RI ECLIGDE
Sbjct: 18  RKPVFVKVEQLKPGTTGHTLTVKVIEANIVVPVTRKTRPASSLSRPSQPSRIVECLIGDE 77

Query: 76  TGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVDKWGRIEVVEPENFVVKEDN 135
           TG ILFTARNDQVD +KPG T+ILRN++IDMFKG+MRL VDKWGRIE     +F VKEDN
Sbjct: 78  TGCILFTARNDQVDLMKPGATVILRNSRIDMFKGTMRLGVDKWGRIEATGAASFTVKEDN 137

Query: 136 NLSLVEYELVNV 142
           NLSLVEYEL+NV
Sbjct: 138 NLSLVEYELINV 149

[Close]

BLAST of Cp4.1LG06g06640 vs. TAIR 10
Match: AT1G10590.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 177.2 bits (448), Expect = 9.6e-45
Identity = 88/132 (66.67%), Postives = 108/132 (81.82%), Query Frame = 0


Query: 13  SGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQK--GRSVSQHLRQTRIAECLIGDET 72
           S LRKPVF KV +L+PGTNGH+L VKVV++  V+Q+  GR +    RQ RIAECL+GDET
Sbjct: 6   SALRKPVFTKVNELRPGTNGHSLNVKVVNTKMVMQRGGGRPMGPQSRQMRIAECLVGDET 65

Query: 73  GTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVDKWGRIEVV-EPENFVVKEDN 132
           G I+FTARNDQVD +K G+ + LRNAKIDM+KGSMRLAVD+WGR+EV  EP +  VK+DN
Sbjct: 66  GIIIFTARNDQVDMMKEGSVVTLRNAKIDMYKGSMRLAVDRWGRVEVAEEPTDITVKDDN 125

Query: 133 NLSLVEYELVNV 142
           NLSL+EYELV+V
Sbjct: 126 NLSLIEYELVSV 137

[Close]

BLAST of Cp4.1LG06g06640 vs. TAIR 10
Match: AT1G10590.3 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 177.2 bits (448), Expect = 9.6e-45
Identity = 88/132 (66.67%), Postives = 108/132 (81.82%), Query Frame = 0


Query: 13  SGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQK--GRSVSQHLRQTRIAECLIGDET 72
           S LRKPVF KV +L+PGTNGH+L VKVV++  V+Q+  GR +    RQ RIAECL+GDET
Sbjct: 20  SALRKPVFTKVNELRPGTNGHSLNVKVVNTKMVMQRGGGRPMGPQSRQMRIAECLVGDET 79

Query: 73  GTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVDKWGRIEVV-EPENFVVKEDN 132
           G I+FTARNDQVD +K G+ + LRNAKIDM+KGSMRLAVD+WGR+EV  EP +  VK+DN
Sbjct: 80  GIIIFTARNDQVDMMKEGSVVTLRNAKIDMYKGSMRLAVDRWGRVEVAEEPTDITVKDDN 139

Query: 133 NLSLVEYELVNV 142
           NLSL+EYELV+V
Sbjct: 140 NLSLIEYELVSV 151

The following BLAST results are available for this feature:

BLAST of Cp4.1LG06g06640 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O49453	4.7e-44	68.94	Uncharacterized protein At4g28440 OS=Arabidopsis thaliana OX=3702 GN=At4g28440 P...	[more]

BLAST of Cp4.1LG06g06640 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023535412.1	1.72e-95	100.00	uncharacterized protein At4g28440-like [Cucurbita pepo subsp. pepo]	[more]
KAG6591934.1	2.45e-95	99.31	hypothetical protein SDJN03_14280, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022935733.1	2.45e-95	99.31	uncharacterized protein At4g28440-like [Cucurbita moschata]	[more]
XP_022976598.1	4.26e-91	97.18	uncharacterized protein At4g28440-like [Cucurbita maxima]	[more]
XP_038899654.1	3.55e-88	88.96	uncharacterized protein At4g28440-like [Benincasa hispida]	[more]

BLAST of Cp4.1LG06g06640 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FBC1	1.18e-95	99.31	uncharacterized protein At4g28440-like OS=Cucurbita moschata OX=3662 GN=LOC11144...	[more]
A0A6J1IMN6	2.06e-91	97.18	uncharacterized protein At4g28440-like OS=Cucurbita maxima OX=3661 GN=LOC1114769...	[more]
A0A5D3DWE0	2.44e-88	88.31	Nucleic acid-binding OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384...	[more]
A0A1S3CKC4	2.44e-88	88.31	uncharacterized protein At4g28440-like OS=Cucumis melo OX=3656 GN=LOC103501787 P...	[more]
A0A0A0L242	4.93e-88	88.31	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G629450 PE=4 SV=1	[more]

BLAST of Cp4.1LG06g06640 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G33845.1	9.9e-50	69.23	Nucleic acid-binding, OB-fold-like protein	[more]
AT1G23750.1	4.9e-49	66.42	Nucleic acid-binding, OB-fold-like protein	[more]
AT4G28440.1	3.3e-45	68.94	Nucleic acid-binding, OB-fold-like protein	[more]
AT1G10590.1	9.6e-45	66.67	Nucleic acid-binding, OB-fold-like protein	[more]
AT1G10590.3	9.6e-45	66.67	Nucleic acid-binding, OB-fold-like protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.40.50.140		coord: 30..133 e-value: 1.6E-44 score: 152.3
None	No IPR available	PANTHER	PTHR31472	OS05G0244600 PROTEIN	coord: 2..144
None	No IPR available	PANTHER	PTHR31472:SF23	F11M21.26 PROTEIN	coord: 2..144
None	No IPR available	CDD	cd04491	SoSSB_OBF	coord: 34..118 e-value: 7.71678E-18 score: 71.1149
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 12..141

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG06g06640.1	Cp4.1LG06g06640.1	mRNA