Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAATTCTCATACCTGACGGGCTACTCCGCCCCTCCCTAACACGCCTCTGCTTTGCAGCAACTTCGCCATGGAACCGCCAAAATTCCAATGAGATTAAATCCTCGTACCGGGTCGCAGCCATGGATGAAGCTGTCCTTGACGCCGACAAATTTCGGGCTGAATTCCTGCGAATTTTGCGTAGTAGACGATCTCCAGAAGGTACGAAATTGAATTCGAATGTCATTTCTCTATTCTCTGTTTTGGTTTACCTTGAATGTTTTGATGTCTGTTCTGGGTAGCTCAGAAGTCTGTGGATTTTGGCTCTGAAATTCTTGCTTGA
mRNA sequence
ATGGCAATTCTCATACCTGACGGGCTACTCCGCCCCTCCCTAACACGCCTCTGCTTTGCAGCAACTTCGCCATGGAACCGCCAAAATTCCAATGAGATTAAATCCTCGTACCGGGTCGCAGCCATGGATGAAGCTGTCCTTGACGCCGACAAATTTCGGGCTGAATTCCTGCGAATTTTGCGTAGTAGACGATCTCCAGAAGCTCAGAAGTCTGTGGATTTTGGCTCTGAAATTCTTGCTTGA
Coding sequence (CDS)
ATGGCAATTCTCATACCTGACGGGCTACTCCGCCCCTCCCTAACACGCCTCTGCTTTGCAGCAACTTCGCCATGGAACCGCCAAAATTCCAATGAGATTAAATCCTCGTACCGGGTCGCAGCCATGGATGAAGCTGTCCTTGACGCCGACAAATTTCGGGCTGAATTCCTGCGAATTTTGCGTAGTAGACGATCTCCAGAAGCTCAGAAGTCTGTGGATTTTGGCTCTGAAATTCTTGCTTGA
Protein sequence
MAILIPDGLLRPSLTRLCFAATSPWNRQNSNEIKSSYRVAAMDEAVLDADKFRAEFLRILRSRRSPEAQKSVDFGSEILA
Homology
BLAST of Cp4.1LG06g05170 vs. NCBI nr
Match:
XP_023535291.1 (uncharacterized protein LOC111796769 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 135 bits (339), Expect = 7.65e-36
Identity = 68/72 (94.44%), Postives = 69/72 (95.83%), Query Frame = 0
Query: 1 MAILIPDGLLRPSLTRLCFAATSPWNRQNSNEIKSSYRVAAMDEAVLDADKFRAEFLRIL 60
MAILIPDGLLRPSLTRLCFAATSPWNRQNSNEIKSSYRVAAMDEAVLDADKFRAEFLRIL
Sbjct: 1 MAILIPDGLLRPSLTRLCFAATSPWNRQNSNEIKSSYRVAAMDEAVLDADKFRAEFLRIL 60
Query: 61 RSRRSPEAQKSV 72
RSRRSPE +V
Sbjct: 61 RSRRSPEVPLNV 72
BLAST of Cp4.1LG06g05170 vs. NCBI nr
Match:
XP_022975811.1 (uncharacterized protein LOC111476405 isoform X2 [Cucurbita maxima])
HSP 1 Score: 128 bits (322), Expect = 1.98e-33
Identity = 64/72 (88.89%), Postives = 67/72 (93.06%), Query Frame = 0
Query: 1 MAILIPDGLLRPSLTRLCFAATSPWNRQNSNEIKSSYRVAAMDEAVLDADKFRAEFLRIL 60
MAILIPD LLRPSLTRLCFAATSPWNRQNSN IKSSYRVAAMDEAV+DADKFRAEFLR+L
Sbjct: 1 MAILIPDALLRPSLTRLCFAATSPWNRQNSNGIKSSYRVAAMDEAVVDADKFRAEFLRVL 60
Query: 61 RSRRSPEAQKSV 72
RSRRSPE +V
Sbjct: 61 RSRRSPEVPLNV 72
BLAST of Cp4.1LG06g05170 vs. NCBI nr
Match:
XP_022975810.1 (uncharacterized protein LOC111476405 isoform X1 [Cucurbita maxima])
HSP 1 Score: 128 bits (322), Expect = 2.21e-33
Identity = 64/72 (88.89%), Postives = 67/72 (93.06%), Query Frame = 0
Query: 1 MAILIPDGLLRPSLTRLCFAATSPWNRQNSNEIKSSYRVAAMDEAVLDADKFRAEFLRIL 60
MAILIPD LLRPSLTRLCFAATSPWNRQNSN IKSSYRVAAMDEAV+DADKFRAEFLR+L
Sbjct: 1 MAILIPDALLRPSLTRLCFAATSPWNRQNSNGIKSSYRVAAMDEAVVDADKFRAEFLRVL 60
Query: 61 RSRRSPEAQKSV 72
RSRRSPE +V
Sbjct: 61 RSRRSPEVPLNV 72
BLAST of Cp4.1LG06g05170 vs. NCBI nr
Match:
KAG7024623.1 (hypothetical protein SDJN02_13441, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 115 bits (289), Expect = 3.42e-30
Identity = 61/77 (79.22%), Postives = 65/77 (84.42%), Query Frame = 0
Query: 1 MAILIPDGLLRPSLTRLCFAATSPWNRQNSNEIKSSYRVAA-----MDEAVLDADKFRAE 60
MAILIPD LLRPSLTRLC AATSPWNRQ+SNEIKS YRVAA M EAV+DADKFRAE
Sbjct: 1 MAILIPDALLRPSLTRLCLAATSPWNRQSSNEIKSLYRVAALGNCQMGEAVVDADKFRAE 60
Query: 61 FLRILRSRRSPEAQKSV 72
FLR+LRSRRSPE +V
Sbjct: 61 FLRVLRSRRSPEVPLNV 77
BLAST of Cp4.1LG06g05170 vs. NCBI nr
Match:
XP_022936568.1 (uncharacterized protein LOC111443135 isoform X2 [Cucurbita moschata])
HSP 1 Score: 115 bits (289), Expect = 1.35e-28
Identity = 61/77 (79.22%), Postives = 65/77 (84.42%), Query Frame = 0
Query: 1 MAILIPDGLLRPSLTRLCFAATSPWNRQNSNEIKSSYRVAA-----MDEAVLDADKFRAE 60
MAILIPD LLRPSLTRLC AATSPWNRQ+SNEIKS YRVAA M EAV+DADKFRAE
Sbjct: 1 MAILIPDALLRPSLTRLCLAATSPWNRQSSNEIKSLYRVAALGNCQMGEAVVDADKFRAE 60
Query: 61 FLRILRSRRSPEAQKSV 72
FLR+LRSRRSPE +V
Sbjct: 61 FLRVLRSRRSPEVPLNV 77
BLAST of Cp4.1LG06g05170 vs. ExPASy TrEMBL
Match:
A0A6J1IF89 (uncharacterized protein LOC111476405 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111476405 PE=4 SV=1)
HSP 1 Score: 128 bits (322), Expect = 9.58e-34
Identity = 64/72 (88.89%), Postives = 67/72 (93.06%), Query Frame = 0
Query: 1 MAILIPDGLLRPSLTRLCFAATSPWNRQNSNEIKSSYRVAAMDEAVLDADKFRAEFLRIL 60
MAILIPD LLRPSLTRLCFAATSPWNRQNSN IKSSYRVAAMDEAV+DADKFRAEFLR+L
Sbjct: 1 MAILIPDALLRPSLTRLCFAATSPWNRQNSNGIKSSYRVAAMDEAVVDADKFRAEFLRVL 60
Query: 61 RSRRSPEAQKSV 72
RSRRSPE +V
Sbjct: 61 RSRRSPEVPLNV 72
BLAST of Cp4.1LG06g05170 vs. ExPASy TrEMBL
Match:
A0A6J1IHS0 (uncharacterized protein LOC111476405 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111476405 PE=4 SV=1)
HSP 1 Score: 128 bits (322), Expect = 1.07e-33
Identity = 64/72 (88.89%), Postives = 67/72 (93.06%), Query Frame = 0
Query: 1 MAILIPDGLLRPSLTRLCFAATSPWNRQNSNEIKSSYRVAAMDEAVLDADKFRAEFLRIL 60
MAILIPD LLRPSLTRLCFAATSPWNRQNSN IKSSYRVAAMDEAV+DADKFRAEFLR+L
Sbjct: 1 MAILIPDALLRPSLTRLCFAATSPWNRQNSNGIKSSYRVAAMDEAVVDADKFRAEFLRVL 60
Query: 61 RSRRSPEAQKSV 72
RSRRSPE +V
Sbjct: 61 RSRRSPEVPLNV 72
BLAST of Cp4.1LG06g05170 vs. ExPASy TrEMBL
Match:
A0A6J1FDL4 (uncharacterized protein LOC111443135 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111443135 PE=4 SV=1)
HSP 1 Score: 115 bits (289), Expect = 6.54e-29
Identity = 61/77 (79.22%), Postives = 65/77 (84.42%), Query Frame = 0
Query: 1 MAILIPDGLLRPSLTRLCFAATSPWNRQNSNEIKSSYRVAA-----MDEAVLDADKFRAE 60
MAILIPD LLRPSLTRLC AATSPWNRQ+SNEIKS YRVAA M EAV+DADKFRAE
Sbjct: 1 MAILIPDALLRPSLTRLCLAATSPWNRQSSNEIKSLYRVAALGNCQMGEAVVDADKFRAE 60
Query: 61 FLRILRSRRSPEAQKSV 72
FLR+LRSRRSPE +V
Sbjct: 61 FLRVLRSRRSPEVPLNV 77
BLAST of Cp4.1LG06g05170 vs. ExPASy TrEMBL
Match:
A0A6J1F8T3 (uncharacterized protein LOC111443135 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111443135 PE=4 SV=1)
HSP 1 Score: 115 bits (289), Expect = 7.16e-29
Identity = 61/77 (79.22%), Postives = 65/77 (84.42%), Query Frame = 0
Query: 1 MAILIPDGLLRPSLTRLCFAATSPWNRQNSNEIKSSYRVAA-----MDEAVLDADKFRAE 60
MAILIPD LLRPSLTRLC AATSPWNRQ+SNEIKS YRVAA M EAV+DADKFRAE
Sbjct: 1 MAILIPDALLRPSLTRLCLAATSPWNRQSSNEIKSLYRVAALGNCQMGEAVVDADKFRAE 60
Query: 61 FLRILRSRRSPEAQKSV 72
FLR+LRSRRSPE +V
Sbjct: 61 FLRVLRSRRSPEVPLNV 77
BLAST of Cp4.1LG06g05170 vs. ExPASy TrEMBL
Match:
A0A5A7TAI4 (Putative esterase YitV OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G004950 PE=4 SV=1)
HSP 1 Score: 82.8 bits (203), Expect = 1.21e-16
Identity = 48/89 (53.93%), Postives = 56/89 (62.92%), Query Frame = 0
Query: 1 MAILIPDGLLRPSLTRLCFAATSPWNRQNSNEIKSSYRVAA----------MDEAVLDAD 60
MAILI L PSL LC A T PWNRQ+ KSSYRVAA M+EA++DAD
Sbjct: 1 MAILISHVRLLPSLACLCHAPTFPWNRQSLYAFKSSYRVAARGRYPKEVNQMEEAIVDAD 60
Query: 61 KFRAEFLRILRSRRSPEAQKSVDFGSEIL 79
KFRAEFLR+LR+RRS E +V +L
Sbjct: 61 KFRAEFLRVLRNRRSGEVPLNVKHTEPVL 89
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
XP_023535291.1 | 7.65e-36 | 94.44 | uncharacterized protein LOC111796769 [Cucurbita pepo subsp. pepo] | [more] |
XP_022975811.1 | 1.98e-33 | 88.89 | uncharacterized protein LOC111476405 isoform X2 [Cucurbita maxima] | [more] |
XP_022975810.1 | 2.21e-33 | 88.89 | uncharacterized protein LOC111476405 isoform X1 [Cucurbita maxima] | [more] |
KAG7024623.1 | 3.42e-30 | 79.22 | hypothetical protein SDJN02_13441, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
XP_022936568.1 | 1.35e-28 | 79.22 | uncharacterized protein LOC111443135 isoform X2 [Cucurbita moschata] | [more] |
Match Name | E-value | Identity | Description | |
A0A6J1IF89 | 9.58e-34 | 88.89 | uncharacterized protein LOC111476405 isoform X2 OS=Cucurbita maxima OX=3661 GN=L... | [more] |
A0A6J1IHS0 | 1.07e-33 | 88.89 | uncharacterized protein LOC111476405 isoform X1 OS=Cucurbita maxima OX=3661 GN=L... | [more] |
A0A6J1FDL4 | 6.54e-29 | 79.22 | uncharacterized protein LOC111443135 isoform X2 OS=Cucurbita moschata OX=3662 GN... | [more] |
A0A6J1F8T3 | 7.16e-29 | 79.22 | uncharacterized protein LOC111443135 isoform X1 OS=Cucurbita moschata OX=3662 GN... | [more] |
A0A5A7TAI4 | 1.21e-16 | 53.93 | Putative esterase YitV OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold4... | [more] |
Match Name | E-value | Identity | Description | |