Cp4.1LG04g07750 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG04g07750
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionPentatricopeptide repeat-containing protein
LocationCp4.1LG04: 3919784 .. 3920803 (+)
RNA-Seq ExpressionCp4.1LG04g07750
SyntenyCp4.1LG04g07750
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGATAAGGTTGTTCTTCCCCTCCTCCTCCCCAATCCACCGCCCTCCAAACCCCTCATCTCCGTCTTCCACCACCAGCCCCCTTCGCCCTCTTCCCCGCATACAACACTATCCTTTCCTCCGCCGCAGCCGCAGCCGCTCTCTTCCCCATCATCCCCCATAGCCCCTCTTCTCCAAGGCATCCTTCATCCCCACCAAGACCCCTCTTCCCCTCAAACCCATAACCCCAAATCCATTTTCAGAACCCACACCCGAAAAGGCCGATCCCGCGGGAACCCATGGTCGCACCACCGTCTCTCTACCAAGGGTAAACAAATTCTCGATTCTTTACTCAACCCAGAATTAGATTCCTCCTATTTTAACGAAATTTTGCTTCAATTCTTTGAAACCAGTCCCGTAGAGCTTAATTTCACCCCTGAATCTGTTTCATTCGACATTTTGGGGATAATCAAGGGCTTAGTGTTTCGCAATAAGAATGAAGTAGCCTTGCGTAATCAGAAGGATTTTGCATCGATTTTGAATAGCTCTGTCATTGCTGTGATTATTAGTGTTCTTGGTAAACAGGGTCGGGCTTCTTTTGCAGCTTCTTTGCTTCATGAGCTTCGAAACAATGGACTAATTATTGACATTTATGCTTATACTTCTTTGATAACTGCTTATGCTAGCAATGGTAGATATAGAGAGGCTGTGATGTTGTTTAACAAGCTAGAACAAGAAGGTTATACACCAACTTTAATTACTTATAATATCATCTTGAATGCCTATGGGAAAATGGGTATGCCTTGGAGTAAAATTGCTGCCATTGTTGATAGCATGAAGAGTTTCGGGGTTGCCCCAGATTTGTGTACATATAATATGCTTATTAGCAGTTGTTGCAGAGGGTCATTGTATAAAGAAGCAGCAGAGGTGTTTGAAGAAATGAAAGCAGCTGGGTTTATTCCTGATAAGGTTACTTACAATGCGTTGTTGGATGTGTATGGGAAGTCTCGACGACCTAAGGAGCGATGGAGGTTTTGA

mRNA sequence

ATGGCGGATAAGGTTGTTCTTCCCCTCCTCCTCCCCAATCCACCGCCCTCCAAACCCCTCATCTCCGTCTTCCACCACCAGCCCCCTTCGCCCTCTTCCCCGCATACAACACTATCCTTTCCTCCGCCGCAGCCGCAGCCGCTCTCTTCCCCATCATCCCCCATAGCCCCTCTTCTCCAAGGCATCCTTCATCCCCACCAAGACCCCTCTTCCCCTCAAACCCATAACCCCAAATCCATTTTCAGAACCCACACCCGAAAAGGCCGATCCCGCGGGAACCCATGGTCGCACCACCGTCTCTCTACCAAGGGTAAACAAATTCTCGATTCTTTACTCAACCCAGAATTAGATTCCTCCTATTTTAACGAAATTTTGCTTCAATTCTTTGAAACCAGTCCCGTAGAGCTTAATTTCACCCCTGAATCTGTTTCATTCGACATTTTGGGGATAATCAAGGGCTTAGTGTTTCGCAATAAGAATGAAGTAGCCTTGCGTAATCAGAAGGATTTTGCATCGATTTTGAATAGCTCTGTCATTGCTGTGATTATTAGTGTTCTTGGTAAACAGGGTCGGGCTTCTTTTGCAGCTTCTTTGCTTCATGAGCTTCGAAACAATGGACTAATTATTGACATTTATGCTTATACTTCTTTGATAACTGCTTATGCTAGCAATGGTAGATATAGAGAGGCTGTGATGTTGTTTAACAAGCTAGAACAAGAAGGTTATACACCAACTTTAATTACTTATAATATCATCTTGAATGCCTATGGGAAAATGGGTATGCCTTGGAGTAAAATTGCTGCCATTGTTGATAGCATGAAGAGTTTCGGGGTTGCCCCAGATTTGTGTACATATAATATGCTTATTAGCAGTTGTTGCAGAGGGTCATTGTATAAAGAAGCAGCAGAGGTGTTTGAAGAAATGAAAGCAGCTGGGTTTATTCCTGATAAGGTTACTTACAATGCGTTGTTGGATGTGTATGGGAAGTCTCGACGACCTAAGGAGCGATGGAGGTTTTGA

Coding sequence (CDS)

ATGGCGGATAAGGTTGTTCTTCCCCTCCTCCTCCCCAATCCACCGCCCTCCAAACCCCTCATCTCCGTCTTCCACCACCAGCCCCCTTCGCCCTCTTCCCCGCATACAACACTATCCTTTCCTCCGCCGCAGCCGCAGCCGCTCTCTTCCCCATCATCCCCCATAGCCCCTCTTCTCCAAGGCATCCTTCATCCCCACCAAGACCCCTCTTCCCCTCAAACCCATAACCCCAAATCCATTTTCAGAACCCACACCCGAAAAGGCCGATCCCGCGGGAACCCATGGTCGCACCACCGTCTCTCTACCAAGGGTAAACAAATTCTCGATTCTTTACTCAACCCAGAATTAGATTCCTCCTATTTTAACGAAATTTTGCTTCAATTCTTTGAAACCAGTCCCGTAGAGCTTAATTTCACCCCTGAATCTGTTTCATTCGACATTTTGGGGATAATCAAGGGCTTAGTGTTTCGCAATAAGAATGAAGTAGCCTTGCGTAATCAGAAGGATTTTGCATCGATTTTGAATAGCTCTGTCATTGCTGTGATTATTAGTGTTCTTGGTAAACAGGGTCGGGCTTCTTTTGCAGCTTCTTTGCTTCATGAGCTTCGAAACAATGGACTAATTATTGACATTTATGCTTATACTTCTTTGATAACTGCTTATGCTAGCAATGGTAGATATAGAGAGGCTGTGATGTTGTTTAACAAGCTAGAACAAGAAGGTTATACACCAACTTTAATTACTTATAATATCATCTTGAATGCCTATGGGAAAATGGGTATGCCTTGGAGTAAAATTGCTGCCATTGTTGATAGCATGAAGAGTTTCGGGGTTGCCCCAGATTTGTGTACATATAATATGCTTATTAGCAGTTGTTGCAGAGGGTCATTGTATAAAGAAGCAGCAGAGGTGTTTGAAGAAATGAAAGCAGCTGGGTTTATTCCTGATAAGGTTACTTACAATGCGTTGTTGGATGTGTATGGGAAGTCTCGACGACCTAAGGAGCGATGGAGGTTTTGA

Protein sequence

MADKVVLPLLLPNPPPSKPLISVFHHQPPSPSSPHTTLSFPPPQPQPLSSPSSPIAPLLQGILHPHQDPSSPQTHNPKSIFRTHTRKGRSRGNPWSHHRLSTKGKQILDSLLNPELDSSYFNEILLQFFETSPVELNFTPESVSFDILGIIKGLVFRNKNEVALRNQKDFASILNSSVIAVIISVLGKQGRASFAASLLHELRNNGLIIDIYAYTSLITAYASNGRYREAVMLFNKLEQEGYTPTLITYNIILNAYGKMGMPWSKIAAIVDSMKSFGVAPDLCTYNMLISSCCRGSLYKEAAEVFEEMKAAGFIPDKVTYNALLDVYGKSRRPKERWRF
Homology
BLAST of Cp4.1LG04g07750 vs. ExPASy Swiss-Prot
Match: Q9LYZ9 (Pentatricopeptide repeat-containing protein At5g02860 OS=Arabidopsis thaliana OX=3702 GN=At5g02860 PE=2 SV=1)

HSP 1 Score: 310.1 bits (793), Expect = 3.2e-83
Identity = 177/346 (51.16%), Postives = 234/346 (67.63%), Query Frame = 0

Query: 1   MADKVVLPLLLPNPPPSKPLISVFHHQPPSPSSPHTTLSFPPPQPQPLSSPSSPIAPLLQ 60
           MADK+ LPLLLP  P SKP     +H         T+LS PPP          P+ PLL 
Sbjct: 1   MADKLALPLLLPCTPSSKPYSHDQNHHISRTPFLTTSLSSPPP---------PPVEPLLH 60

Query: 61  GILHPHQDPSSPQ-THNPKSIFRTHTRKGRSR----GNPWSHHRLSTKGKQILDSLLNPE 120
            +   HQ+P+S Q   +  S  R  TR G+SR    G PWS+H LS +G+Q+L SL+ P 
Sbjct: 61  DVF-LHQNPNSRQPISSQTSRNRNRTRIGKSRDPNLGKPWSYHGLSPQGQQVLRSLIEPN 120

Query: 121 LDSSYFNEILLQFFETSPVELNFTPESVSFDILGIIKGLVFRNKNEVALR------NQKD 180
            DS   + +L + FE         PES S ++L  +KGL F  K ++ALR       QKD
Sbjct: 121 FDSGQLDSVLSELFE----PFKDKPESTSSELLAFLKGLGFHKKFDLALRAFDWFMKQKD 180

Query: 181 FASILNSSVIAVIISVLGKQGRASFAASLLHELRNNGLIIDIYAYTSLITAYASNGRYRE 240
           + S+L++SV+A+IIS+LGK+GR S AA++ + L+ +G  +D+Y+YTSLI+A+A++GRYRE
Sbjct: 181 YQSMLDNSVVAIIISMLGKEGRVSSAANMFNGLQEDGFSLDVYSYTSLISAFANSGRYRE 240

Query: 241 AVMLFNKLEQEGYTPTLITYNIILNAYGKMGMPWSKIAAIVDSMKSFGVAPDLCTYNMLI 300
           AV +F K+E++G  PTLITYN+ILN +GKMG PW+KI ++V+ MKS G+APD  TYN LI
Sbjct: 241 AVNVFKKMEEDGCKPTLITYNVILNVFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLI 300

Query: 301 SSCCRGSLYKEAAEVFEEMKAAGFIPDKVTYNALLDVYGKSRRPKE 336
           + C RGSL++EAA+VFEEMKAAGF  DKVTYNALLDVYGKS RPKE
Sbjct: 301 TCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKE 332

BLAST of Cp4.1LG04g07750 vs. ExPASy Swiss-Prot
Match: O64624 (Pentatricopeptide repeat-containing protein At2g18940, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At2g18940 PE=2 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 1.5e-32
Identity = 110/345 (31.88%), Postives = 176/345 (51.01%), Query Frame = 0

Query: 10  LLPNPPPSKPLISVFHHQPPSPSSPHT------TLSFPPPQPQPLSSPSSPIAPLLQGIL 69
           L P+ PP  P+ S     PPS SS  +      TL  PPP P     PS P+  LL  ++
Sbjct: 5   LFPHKPP-YPIQS--KRPPPSQSSNQSIKFSSATLHLPPPSP-----PSFPLDSLLHHLV 64

Query: 70  H----PHQDPSSPQTHNPKSIFRTHTRKGR-------SRGNPWSHHRLSTKGKQILDSLL 129
           H    P +  +S     P     T +   +             S   L  K   +++S++
Sbjct: 65  HLSSPPPRHSNSAAARFPSLEVSTDSSSSKPILGIEIENERNGSLKLLCKKEVVLVNSIV 124

Query: 130 NPELDSSYFNEILLQFFETSPVELNFTPESVSFDILGIIKGLVFRNKNEVA-------LR 189
              L        L +FF++   EL  T      D++ ++KGL      E A       + 
Sbjct: 125 EQPLTG------LSRFFDSVKSELLRT------DLVSLVKGLDDSGHWERAVFLFEWLVL 184

Query: 190 NQKDFASILNSSVIAVIISVLGKQGRASFAASLLHELRNNGLIIDIYAYTSLITAYASNG 249
           +    A  L+  VI + + +LG++ + S AA LL ++     ++D+ AYT+++ AY+  G
Sbjct: 185 SSNSGALKLDHQVIEIFVRILGRESQYSVAAKLLDKIPLQEYLLDVRAYTTILHAYSRTG 244

Query: 250 RYREAVMLFNKLEQEGYTPTLITYNIILNAYGKMGMPWSKIAAIVDSMKSFGVAPDLCTY 309
           +Y +A+ LF ++++ G +PTL+TYN+IL+ +GKMG  W KI  ++D M+S G+  D  T 
Sbjct: 245 KYEKAIDLFERMKEMGPSPTLVTYNVILDVFGKMGRSWRKILGVLDEMRSKGLKFDEFTC 304

Query: 310 NMLISSCCRGSLYKEAAEVFEEMKAAGFIPDKVTYNALLDVYGKS 331
           + ++S+C R  L +EA E F E+K+ G+ P  VTYNALL V+GK+
Sbjct: 305 STVLSACAREGLLREAKEFFAELKSCGYEPGTVTYNALLQVFGKA 329

BLAST of Cp4.1LG04g07750 vs. ExPASy Swiss-Prot
Match: B8Y6I0 (Pentatricopeptide repeat-containing protein 10, chloroplastic OS=Zea mays OX=4577 GN=PPR10 PE=1 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 1.8e-30
Identity = 101/319 (31.66%), Postives = 156/319 (48.90%), Query Frame = 0

Query: 23  VFHHQPPSPSSPHTTLSFPPPQPQPLSSPSSPIAPLLQGILHPHQDPSSPQTHNPKSIFR 82
           +F ++P  P+ P       P  P P S  S P+  LL  +  P   P+      P+    
Sbjct: 8   LFPNKPTLPAGPRKRGPLLPAAPPPPSPSSLPLDSLLLHLTAPAPAPAPA----PR---- 67

Query: 83  THTRKGRSRGNPWSHHRLSTKGKQILDSLLNPELDSSYFNEILLQFFETSPVELNFTPES 142
                 RS   P   H   +   Q+L   +     SS+    L  F  +   EL      
Sbjct: 68  ------RSHQTPTPPHSFLSPDAQVLVLAI-----SSHPLPTLAAFLASRRDEL------ 127

Query: 143 VSFDILGIIKGLVFRNKNE--VALRNQKDFASILNSSVIAVIISVLGKQGRASFAASLLH 202
           +  DI  ++K L      E  +AL          ++S + +++  LG++G+     +LL 
Sbjct: 128 LRADITSLLKALELSGHWEWALALLRWAGKEGAADASALEMVVRALGREGQHDAVCALLD 187

Query: 203 EL-RNNGLIIDIYAYTSLITAYASNGRYREAVMLFNKLEQEGYTPTLITYNIILNAYGKM 262
           E     G  +D+ AYT+++ A +  GRY  A+ LF +L ++G  PTL+TYN++L+ YG+M
Sbjct: 188 ETPLPPGSRLDVRAYTTVLHALSRAGRYERALELFAELRRQGVAPTLVTYNVVLDVYGRM 247

Query: 263 GMPWSKIAAIVDSMKSFGVAPDLCTYNMLISSCCRGSLYKEAAEVFEEMKAAGFIPDKVT 322
           G  W +I A++D M++ GV PD  T + +I++CCR  L  EA   FE++KA G  P  VT
Sbjct: 248 GRSWPRIVALLDEMRAAGVEPDGFTASTVIAACCRDGLVDEAVAFFEDLKARGHAPCVVT 301

Query: 323 YNALLDVYGKSRRPKERWR 339
           YNALL V+GK+    E  R
Sbjct: 308 YNALLQVFGKAGNYTEALR 301

BLAST of Cp4.1LG04g07750 vs. ExPASy Swiss-Prot
Match: Q9S7Q2 (Pentatricopeptide repeat-containing protein At1g74850, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PTAC2 PE=2 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 4.2e-27
Identity = 54/158 (34.18%), Postives = 94/158 (59.49%), Query Frame = 0

Query: 175 NSSVIAVIISVLGKQGRASFAASLLHELRNNGLIIDIYAYTSLITAYASNGRYREAVMLF 234
           N  +  ++IS+LG++G       +  E+ + G+   +++YT+LI AY  NGRY  ++ L 
Sbjct: 140 NEHIYTIMISLLGREGLLDKCLEVFDEMPSQGVSRSVFSYTALINAYGRNGRYETSLELL 199

Query: 235 NKLEQEGYTPTLITYNIILNAYGKMGMPWSKIAAIVDSMKSFGVAPDLCTYNMLISSCCR 294
           ++++ E  +P+++TYN ++NA  + G+ W  +  +   M+  G+ PD+ TYN L+S+C  
Sbjct: 200 DRMKNEKISPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPDIVTYNTLLSACAI 259

Query: 295 GSLYKEAAEVFEEMKAAGFIPDKVTYNALLDVYGKSRR 333
             L  EA  VF  M   G +PD  TY+ L++ +GK RR
Sbjct: 260 RGLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRR 297

BLAST of Cp4.1LG04g07750 vs. ExPASy Swiss-Prot
Match: Q9SIC9 (Pentatricopeptide repeat-containing protein At2g31400, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At2g31400 PE=2 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 1.4e-22
Identity = 89/317 (28.08%), Postives = 149/317 (47.00%), Query Frame = 0

Query: 24  FHHQPPSPSSPHTTLSFPPPQ------PQPLSSPSSPIAPLLQGILHPHQDPSSPQTHNP 83
           ++H+P   SS     S PPP       P  LS P     P    +  P  D SS  +   
Sbjct: 87  YNHRPYGASSSPRG-SAPPPSSVATVAPAQLSQP-----PNFSPLQTPKSDLSSDFSGRR 146

Query: 84  KSIFRTHTRKGRSRGNPWSHHRLSTKGKQILDSLLNPELDSSYFNEILLQFFETSPVELN 143
            + F +    GR +    + H  S+  +  L + ++   D   F+ ++L F         
Sbjct: 147 STRFVSKMHFGRQKTTMATRH--SSAAEDALQNAIDFSGDDEMFHSLMLSF--------- 206

Query: 144 FTPESVSFDILGIIKGLVFRNKNEVAL-----RNQKDFASILNSSVIAVIISVLGKQGRA 203
            +    S D   II+ L  RN+ + A+       +++        + + +IS LG+ G+ 
Sbjct: 207 ESKLCGSDDCTYIIRELGNRNECDKAVGFYEFAVKRERRKNEQGKLASAMISTLGRYGKV 266

Query: 204 SFAASLLHELRNNGLIIDIYAYTSLITAYASNGRYREAVMLFNKLEQEGYTPTLITYNII 263
           + A  +       G    +YA+++LI+AY  +G + EA+ +FN +++ G  P L+TYN +
Sbjct: 267 TIAKRIFETAFAGGYGNTVYAFSALISAYGRSGLHEEAISVFNSMKEYGLRPNLVTYNAV 326

Query: 264 LNAYGKMGMPWSKIAAIVDSMKSFGVAPDLCTYNMLISSCCRGSLYKEAAEVFEEMKAAG 323
           ++A GK GM + ++A   D M+  GV PD  T+N L++ C RG L++ A  +F+EM    
Sbjct: 327 IDACGKGGMEFKQVAKFFDEMQRNGVQPDRITFNSLLAVCSRGGLWEAARNLFDEMTNRR 386

Query: 324 FIPDKVTYNALLDVYGK 330
              D  +YN LLD   K
Sbjct: 387 IEQDVFSYNTLLDAICK 386

BLAST of Cp4.1LG04g07750 vs. NCBI nr
Match: XP_038888056.1 (pentatricopeptide repeat-containing protein At5g02860 [Benincasa hispida])

HSP 1 Score: 498 bits (1283), Expect = 7.64e-168
Identity = 272/347 (78.39%), Postives = 291/347 (83.86%), Query Frame = 0

Query: 1   MADKVVLPLLLPNPPPSKPLISVFHHQPPSPSSPHTTLSFPPPQPQPLSSPSSPIAPLLQ 60
           MADKV LPLLLPNPPPSKPL  VFHH PPSPSSP   L+FPPP   P SS SSPIAPLLQ
Sbjct: 1   MADKVALPLLLPNPPPSKPLFPVFHHHPPSPSSPTPPLTFPPPPQPPFSSSSSPIAPLLQ 60

Query: 61  GILHPHQDPSSPQTHNPKSIFRTHTRKGRSR----GNPWSHHRLSTKGKQILDSLLNPEL 120
            +L PHQ PSS Q + PK  FRT TR GRSR    G PWSHHRLST+G+QILDSLLNPE 
Sbjct: 61  DLL-PHQHPSSTQPYLPKPTFRTRTRIGRSRDPNRGKPWSHHRLSTRGQQILDSLLNPEF 120

Query: 121 DSSYFNEILLQFFET--SPVELNFTPESVSFDILGIIKGLVFRNKNEVALR------NQK 180
           DSS  NEILLQF +   SP  LNFT ESVSFDILGIIKGLVF  KNE+ALR      N++
Sbjct: 121 DSSSLNEILLQFGDNQASPEGLNFTSESVSFDILGIIKGLVFNKKNELALRVFDFFRNRE 180

Query: 181 DFASILNSSVIAVIISVLGKQGRASFAASLLHELRNNGLIIDIYAYTSLITAYASNGRYR 240
           DFASIL+SSVIAVIISVLGK+GRASFAASLLHELRN+G+ IDIYAYTSLITAYASNGRYR
Sbjct: 181 DFASILSSSVIAVIISVLGKEGRASFAASLLHELRNDGVNIDIYAYTSLITAYASNGRYR 240

Query: 241 EAVMLFNKLEQEGYTPTLITYNIILNAYGKMGMPWSKIAAIVDSMKSFGVAPDLCTYNML 300
           EAVM+F KLE+EG  PTLITYN+ILN YGKMGMPWSKIAA+VDSMK+ GV PDL TYN L
Sbjct: 241 EAVMVFKKLEEEGCRPTLITYNVILNVYGKMGMPWSKIAALVDSMKNSGVDPDLYTYNTL 300

Query: 301 ISSCCRGSLYKEAAEVFEEMKAAGFIPDKVTYNALLDVYGKSRRPKE 335
           ISSC RGSLY+EAAEVFEEMKAAGF PDKVTYNALLDVYGKSRRPKE
Sbjct: 301 ISSCRRGSLYEEAAEVFEEMKAAGFSPDKVTYNALLDVYGKSRRPKE 346

BLAST of Cp4.1LG04g07750 vs. NCBI nr
Match: KAA0031354.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK06806.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 491 bits (1263), Expect = 7.37e-165
Identity = 268/347 (77.23%), Postives = 292/347 (84.15%), Query Frame = 0

Query: 1   MADKVVLPLLLPNPPPSKPLISVFHHQPPSPSSPHT-TLSFPPPQPQPLSSPSSPIAPLL 60
           MADKV LPLLLPNPPPSK L  VFHHQPP PSSP   +L+FPPP   P SS SSP+APLL
Sbjct: 1   MADKVALPLLLPNPPPSKSLFPVFHHQPPLPSSPSPPSLTFPPPPQSPPSSSSSPLAPLL 60

Query: 61  QGILHPHQDPSSP-QTHNPKSIFRTHTRKGRSR----GNPWSHHRLSTKGKQILDSLLNP 120
           Q +L PHQ PSS  Q H PK  FRT TR GRSR    G PWSHHRLST+G++ILDSLLNP
Sbjct: 61  QDLL-PHQHPSSSAQPHLPKPTFRTRTRIGRSRDPNRGKPWSHHRLSTQGQRILDSLLNP 120

Query: 121 ELDSSYFNEILLQFFETSPVELNFTPESVSFDILGIIKGLVFRNKNEVAL------RNQK 180
           E DSS  +EILLQ FETSP  LNFT +SVSFDILGIIKGLVF  KNE+AL      RN++
Sbjct: 121 EFDSSSLDEILLQLFETSPDGLNFTSDSVSFDILGIIKGLVFNKKNELALGVFDFVRNRE 180

Query: 181 DFASILNSSVIAVIISVLGKQGRASFAASLLHELRNNGLIIDIYAYTSLITAYASNGRYR 240
           DFASIL++SVIAVIISVLGK+GRASFAASLLHELRN+G+ IDIYAYTSLITAYASNGRYR
Sbjct: 181 DFASILSNSVIAVIISVLGKEGRASFAASLLHELRNDGVHIDIYAYTSLITAYASNGRYR 240

Query: 241 EAVMLFNKLEQEGYTPTLITYNIILNAYGKMGMPWSKIAAIVDSMKSFGVAPDLCTYNML 300
           EAVM+F KLE+EG  PTLITYN+ILN YGKMGMPWSKI+A+VDSMKS GV PDL TYN L
Sbjct: 241 EAVMVFKKLEEEGCRPTLITYNVILNVYGKMGMPWSKISALVDSMKSSGVVPDLYTYNTL 300

Query: 301 ISSCCRGSLYKEAAEVFEEMKAAGFIPDKVTYNALLDVYGKSRRPKE 335
           ISSC RGSLY+EAAE+FEEMKAAGF PDKVTYNALLDVYGKSRRPKE
Sbjct: 301 ISSCRRGSLYEEAAEIFEEMKAAGFSPDKVTYNALLDVYGKSRRPKE 346

BLAST of Cp4.1LG04g07750 vs. NCBI nr
Match: XP_008455020.1 (PREDICTED: pentatricopeptide repeat-containing protein At5g02860 [Cucumis melo])

HSP 1 Score: 491 bits (1263), Expect = 1.16e-164
Identity = 268/347 (77.23%), Postives = 292/347 (84.15%), Query Frame = 0

Query: 1   MADKVVLPLLLPNPPPSKPLISVFHHQPPSPSSPHT-TLSFPPPQPQPLSSPSSPIAPLL 60
           MADKV LPLLLPNPPPSK L  VFHHQPP PSSP   +L+FPPP   P SS SSP+APLL
Sbjct: 17  MADKVALPLLLPNPPPSKSLFPVFHHQPPLPSSPSPPSLTFPPPPQSPPSSSSSPLAPLL 76

Query: 61  QGILHPHQDPSSP-QTHNPKSIFRTHTRKGRSR----GNPWSHHRLSTKGKQILDSLLNP 120
           Q +L PHQ PSS  Q H PK  FRT TR GRSR    G PWSHHRLST+G++ILDSLLNP
Sbjct: 77  QDLL-PHQHPSSSAQPHLPKPTFRTRTRIGRSRDPNRGKPWSHHRLSTQGQRILDSLLNP 136

Query: 121 ELDSSYFNEILLQFFETSPVELNFTPESVSFDILGIIKGLVFRNKNEVAL------RNQK 180
           E DSS  +EILLQ FETSP  LNFT +SVSFDILGIIKGLVF  KNE+AL      RN++
Sbjct: 137 EFDSSSLDEILLQLFETSPDGLNFTSDSVSFDILGIIKGLVFNKKNELALGVFDFVRNRE 196

Query: 181 DFASILNSSVIAVIISVLGKQGRASFAASLLHELRNNGLIIDIYAYTSLITAYASNGRYR 240
           DFASIL++SVIAVIISVLGK+GRASFAASLLHELRN+G+ IDIYAYTSLITAYASNGRYR
Sbjct: 197 DFASILSNSVIAVIISVLGKEGRASFAASLLHELRNDGVHIDIYAYTSLITAYASNGRYR 256

Query: 241 EAVMLFNKLEQEGYTPTLITYNIILNAYGKMGMPWSKIAAIVDSMKSFGVAPDLCTYNML 300
           EAVM+F KLE+EG  PTLITYN+ILN YGKMGMPWSKI+A+VDSMKS GV PDL TYN L
Sbjct: 257 EAVMVFKKLEEEGCRPTLITYNVILNVYGKMGMPWSKISALVDSMKSSGVVPDLYTYNTL 316

Query: 301 ISSCCRGSLYKEAAEVFEEMKAAGFIPDKVTYNALLDVYGKSRRPKE 335
           ISSC RGSLY+EAAE+FEEMKAAGF PDKVTYNALLDVYGKSRRPKE
Sbjct: 317 ISSCRRGSLYEEAAEIFEEMKAAGFSPDKVTYNALLDVYGKSRRPKE 362

BLAST of Cp4.1LG04g07750 vs. NCBI nr
Match: XP_023553783.1 (pentatricopeptide repeat-containing protein At5g02860 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 475 bits (1222), Expect = 9.34e-159
Identity = 260/347 (74.93%), Postives = 286/347 (82.42%), Query Frame = 0

Query: 1   MADKVVLPLLLPNPPPSKPLISVFHHQPPSPSSPHTTLSFPPPQ--PQPLSSPSSPIAPL 60
           MADKV LPLLLPNPPPSKPL SVFHHQP S SSP      PPP       SS SS I+P+
Sbjct: 1   MADKVALPLLLPNPPPSKPLFSVFHHQPASHSSP------PPPSLSSSSSSSSSSHISPI 60

Query: 61  LQGILHPHQDPSSPQTHNPKSIFRTHTRKGRSR----GNPWSHHRLSTKGKQILDSLLNP 120
           LQ +  PH+D SSP+ H PKS F++ +R GRSR    G PWSHHRLST+G++I DSLLNP
Sbjct: 61  LQDLFLPHKDSSSPRPHIPKSTFKSRSRIGRSRDPNRGKPWSHHRLSTQGQRIHDSLLNP 120

Query: 121 ELDSSYFNEILLQFFETSPVELNFTPESVSFDILGIIKGLVFRNKNEVALR------NQK 180
           E D+S  NEILLQ FETSP  LNFTPESVS DILGIIKGLVF  KNE+ALR      N++
Sbjct: 121 EFDASSLNEILLQLFETSPEGLNFTPESVSLDILGIIKGLVFNKKNELALRVFDFVRNRE 180

Query: 181 DFASILNSSVIAVIISVLGKQGRASFAASLLHELRNNGLIIDIYAYTSLITAYASNGRYR 240
           DFASIL+SSVIAVIISVLGK+GRAS AASLLHELRN+G+ IDIYAYTSLITAYA+NGRYR
Sbjct: 181 DFASILSSSVIAVIISVLGKEGRASSAASLLHELRNDGVNIDIYAYTSLITAYANNGRYR 240

Query: 241 EAVMLFNKLEQEGYTPTLITYNIILNAYGKMGMPWSKIAAIVDSMKSFGVAPDLCTYNML 300
           EAVM+F KLE+EG  PTLITYN+ILN YGKMGMPWSKIAA+VDSMKS G+APD  TYN L
Sbjct: 241 EAVMVFKKLEEEGCRPTLITYNVILNVYGKMGMPWSKIAALVDSMKSSGIAPDSYTYNTL 300

Query: 301 ISSCCRGSLYKEAAEVFEEMKAAGFIPDKVTYNALLDVYGKSRRPKE 335
           ISSC RGSLY+EAAEVFEEMKAAGF PDKVTYNALLDVYGKSRRPKE
Sbjct: 301 ISSCRRGSLYEEAAEVFEEMKAAGFSPDKVTYNALLDVYGKSRRPKE 341

BLAST of Cp4.1LG04g07750 vs. NCBI nr
Match: KAG6571932.1 (Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 472 bits (1215), Expect = 1.05e-157
Identity = 259/347 (74.64%), Postives = 285/347 (82.13%), Query Frame = 0

Query: 1   MADKVVLPLLLPNPPPSKPLISVFHHQPPSPSSPHTTLSFPPPQ--PQPLSSPSSPIAPL 60
           MADKV LPLLLPNPPPSKPL  VFHHQP S SSP      PPP       SS SS I+P+
Sbjct: 1   MADKVALPLLLPNPPPSKPLFPVFHHQPASHSSP------PPPSLSSSSSSSSSSHISPI 60

Query: 61  LQGILHPHQDPSSPQTHNPKSIFRTHTRKGRSR----GNPWSHHRLSTKGKQILDSLLNP 120
           LQ +L PH+D SSP+ H PKS F++ +R GRSR    G PWSHHRLST+G++I DSLLNP
Sbjct: 61  LQDLLFPHKDSSSPRPHLPKSTFKSRSRIGRSRDPNRGKPWSHHRLSTQGQRIHDSLLNP 120

Query: 121 ELDSSYFNEILLQFFETSPVELNFTPESVSFDILGIIKGLVFRNKNEVALR------NQK 180
           E D+S  NEILLQ FETSP  LNFT ESVS DILGIIKGLVF  KNE+ALR      N++
Sbjct: 121 EFDASSLNEILLQLFETSPEGLNFTSESVSLDILGIIKGLVFNKKNELALRMFDFVRNRE 180

Query: 181 DFASILNSSVIAVIISVLGKQGRASFAASLLHELRNNGLIIDIYAYTSLITAYASNGRYR 240
           DFASIL+SSVIAVIISVLGK+GRAS AASLLHELRN+G+ IDIYAYTSLITAYA+NGRYR
Sbjct: 181 DFASILSSSVIAVIISVLGKEGRASSAASLLHELRNDGVNIDIYAYTSLITAYANNGRYR 240

Query: 241 EAVMLFNKLEQEGYTPTLITYNIILNAYGKMGMPWSKIAAIVDSMKSFGVAPDLCTYNML 300
           EAVM+F KLE+EG  PTLITYN+ILN YGKMGMPWSKIAA+VDSMKS G+APD  TYN L
Sbjct: 241 EAVMVFKKLEEEGCRPTLITYNVILNVYGKMGMPWSKIAALVDSMKSSGIAPDSYTYNTL 300

Query: 301 ISSCCRGSLYKEAAEVFEEMKAAGFIPDKVTYNALLDVYGKSRRPKE 335
           ISSC RGSLY+EAAEVFEEMKAAGF PDKVTYNALLDVYGKSRRPKE
Sbjct: 301 ISSCRRGSLYEEAAEVFEEMKAAGFSPDKVTYNALLDVYGKSRRPKE 341

BLAST of Cp4.1LG04g07750 vs. ExPASy TrEMBL
Match: A0A5A7SJN5 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G001090 PE=4 SV=1)

HSP 1 Score: 491 bits (1263), Expect = 3.57e-165
Identity = 268/347 (77.23%), Postives = 292/347 (84.15%), Query Frame = 0

Query: 1   MADKVVLPLLLPNPPPSKPLISVFHHQPPSPSSPHT-TLSFPPPQPQPLSSPSSPIAPLL 60
           MADKV LPLLLPNPPPSK L  VFHHQPP PSSP   +L+FPPP   P SS SSP+APLL
Sbjct: 1   MADKVALPLLLPNPPPSKSLFPVFHHQPPLPSSPSPPSLTFPPPPQSPPSSSSSPLAPLL 60

Query: 61  QGILHPHQDPSSP-QTHNPKSIFRTHTRKGRSR----GNPWSHHRLSTKGKQILDSLLNP 120
           Q +L PHQ PSS  Q H PK  FRT TR GRSR    G PWSHHRLST+G++ILDSLLNP
Sbjct: 61  QDLL-PHQHPSSSAQPHLPKPTFRTRTRIGRSRDPNRGKPWSHHRLSTQGQRILDSLLNP 120

Query: 121 ELDSSYFNEILLQFFETSPVELNFTPESVSFDILGIIKGLVFRNKNEVAL------RNQK 180
           E DSS  +EILLQ FETSP  LNFT +SVSFDILGIIKGLVF  KNE+AL      RN++
Sbjct: 121 EFDSSSLDEILLQLFETSPDGLNFTSDSVSFDILGIIKGLVFNKKNELALGVFDFVRNRE 180

Query: 181 DFASILNSSVIAVIISVLGKQGRASFAASLLHELRNNGLIIDIYAYTSLITAYASNGRYR 240
           DFASIL++SVIAVIISVLGK+GRASFAASLLHELRN+G+ IDIYAYTSLITAYASNGRYR
Sbjct: 181 DFASILSNSVIAVIISVLGKEGRASFAASLLHELRNDGVHIDIYAYTSLITAYASNGRYR 240

Query: 241 EAVMLFNKLEQEGYTPTLITYNIILNAYGKMGMPWSKIAAIVDSMKSFGVAPDLCTYNML 300
           EAVM+F KLE+EG  PTLITYN+ILN YGKMGMPWSKI+A+VDSMKS GV PDL TYN L
Sbjct: 241 EAVMVFKKLEEEGCRPTLITYNVILNVYGKMGMPWSKISALVDSMKSSGVVPDLYTYNTL 300

Query: 301 ISSCCRGSLYKEAAEVFEEMKAAGFIPDKVTYNALLDVYGKSRRPKE 335
           ISSC RGSLY+EAAE+FEEMKAAGF PDKVTYNALLDVYGKSRRPKE
Sbjct: 301 ISSCRRGSLYEEAAEIFEEMKAAGFSPDKVTYNALLDVYGKSRRPKE 346

BLAST of Cp4.1LG04g07750 vs. ExPASy TrEMBL
Match: A0A1S3C150 (pentatricopeptide repeat-containing protein At5g02860 OS=Cucumis melo OX=3656 GN=LOC103495294 PE=4 SV=1)

HSP 1 Score: 491 bits (1263), Expect = 5.62e-165
Identity = 268/347 (77.23%), Postives = 292/347 (84.15%), Query Frame = 0

Query: 1   MADKVVLPLLLPNPPPSKPLISVFHHQPPSPSSPHT-TLSFPPPQPQPLSSPSSPIAPLL 60
           MADKV LPLLLPNPPPSK L  VFHHQPP PSSP   +L+FPPP   P SS SSP+APLL
Sbjct: 17  MADKVALPLLLPNPPPSKSLFPVFHHQPPLPSSPSPPSLTFPPPPQSPPSSSSSPLAPLL 76

Query: 61  QGILHPHQDPSSP-QTHNPKSIFRTHTRKGRSR----GNPWSHHRLSTKGKQILDSLLNP 120
           Q +L PHQ PSS  Q H PK  FRT TR GRSR    G PWSHHRLST+G++ILDSLLNP
Sbjct: 77  QDLL-PHQHPSSSAQPHLPKPTFRTRTRIGRSRDPNRGKPWSHHRLSTQGQRILDSLLNP 136

Query: 121 ELDSSYFNEILLQFFETSPVELNFTPESVSFDILGIIKGLVFRNKNEVAL------RNQK 180
           E DSS  +EILLQ FETSP  LNFT +SVSFDILGIIKGLVF  KNE+AL      RN++
Sbjct: 137 EFDSSSLDEILLQLFETSPDGLNFTSDSVSFDILGIIKGLVFNKKNELALGVFDFVRNRE 196

Query: 181 DFASILNSSVIAVIISVLGKQGRASFAASLLHELRNNGLIIDIYAYTSLITAYASNGRYR 240
           DFASIL++SVIAVIISVLGK+GRASFAASLLHELRN+G+ IDIYAYTSLITAYASNGRYR
Sbjct: 197 DFASILSNSVIAVIISVLGKEGRASFAASLLHELRNDGVHIDIYAYTSLITAYASNGRYR 256

Query: 241 EAVMLFNKLEQEGYTPTLITYNIILNAYGKMGMPWSKIAAIVDSMKSFGVAPDLCTYNML 300
           EAVM+F KLE+EG  PTLITYN+ILN YGKMGMPWSKI+A+VDSMKS GV PDL TYN L
Sbjct: 257 EAVMVFKKLEEEGCRPTLITYNVILNVYGKMGMPWSKISALVDSMKSSGVVPDLYTYNTL 316

Query: 301 ISSCCRGSLYKEAAEVFEEMKAAGFIPDKVTYNALLDVYGKSRRPKE 335
           ISSC RGSLY+EAAE+FEEMKAAGF PDKVTYNALLDVYGKSRRPKE
Sbjct: 317 ISSCRRGSLYEEAAEIFEEMKAAGFSPDKVTYNALLDVYGKSRRPKE 362

BLAST of Cp4.1LG04g07750 vs. ExPASy TrEMBL
Match: A0A0A0K4H7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G071530 PE=4 SV=1)

HSP 1 Score: 472 bits (1215), Expect = 1.42e-157
Identity = 265/347 (76.37%), Postives = 289/347 (83.29%), Query Frame = 0

Query: 1   MADKVVLPLLLPNPPPSKPLISVFHHQPPSPSSPHTT-LSFPPPQPQPLSSPSSPIAPLL 60
           MADKV LPLLLPNPPPSK    VFHHQP SPSSP    L+FPP  P  LSS SSP+APLL
Sbjct: 1   MADKVSLPLLLPNPPPSKSHFPVFHHQPLSPSSPPPPPLTFPP-TPH-LSSASSPLAPLL 60

Query: 61  QGILHPHQDPSSP-QTHNPKSIFRTHTRKGRS----RGNPWSHHRLSTKGKQILDSLLNP 120
           Q +L PHQ PSS  Q H PK  FRT TR GRS    RG PWSHHRLST+G++ILDSLLNP
Sbjct: 61  QDLL-PHQHPSSSTQPHLPKPTFRTRTRIGRSHDPNRGKPWSHHRLSTQGQRILDSLLNP 120

Query: 121 ELDSSYFNEILLQFFETSPVELNFTPESVSFDILGIIKGLVFRNKNEVAL------RNQK 180
           E DSS  +EILLQ FETS   LNFT +SVSFDILGIIKGLVF  KNE+AL      RN++
Sbjct: 121 EFDSSSLDEILLQLFETSSDGLNFTSDSVSFDILGIIKGLVFYKKNELALCVFYFVRNRE 180

Query: 181 DFASILNSSVIAVIISVLGKQGRASFAASLLHELRNNGLIIDIYAYTSLITAYASNGRYR 240
           DFASIL++SV+AVIISVLGK+GRASFAASLLH+LRN+G+ IDIYAYTSLITAYASNGRYR
Sbjct: 181 DFASILSNSVVAVIISVLGKEGRASFAASLLHDLRNDGVHIDIYAYTSLITAYASNGRYR 240

Query: 241 EAVMLFNKLEQEGYTPTLITYNIILNAYGKMGMPWSKIAAIVDSMKSFGVAPDLCTYNML 300
           EAVM+F KLE+EG  PTLITYN+ILN YGKMGMPWSKIA +VDSMKS GVAPDL TYN L
Sbjct: 241 EAVMVFKKLEEEGCRPTLITYNVILNVYGKMGMPWSKIAGLVDSMKSSGVAPDLYTYNTL 300

Query: 301 ISSCCRGSLYKEAAEVFEEMKAAGFIPDKVTYNALLDVYGKSRRPKE 335
           ISSC RGSLY+EAAEVFEEMKAAGF PDKVTYNALLDVYGKSRRP+E
Sbjct: 301 ISSCRRGSLYEEAAEVFEEMKAAGFSPDKVTYNALLDVYGKSRRPRE 344

BLAST of Cp4.1LG04g07750 vs. ExPASy TrEMBL
Match: A0A6J1GLL1 (pentatricopeptide repeat-containing protein At5g02860 OS=Cucurbita moschata OX=3662 GN=LOC111455390 PE=4 SV=1)

HSP 1 Score: 470 bits (1210), Expect = 2.87e-157
Identity = 259/347 (74.64%), Postives = 284/347 (81.84%), Query Frame = 0

Query: 1   MADKVVLPLLLPNPPPSKPLISVFHHQPPSPSSPHTTLSFPPPQ--PQPLSSPSSPIAPL 60
           MADKV LPLLLPNPPPSKPL  VFHHQP S SSP      PPP       SS SS I+P+
Sbjct: 1   MADKVALPLLLPNPPPSKPLFPVFHHQPASHSSP------PPPSLSSSSSSSSSSHISPI 60

Query: 61  LQGILHPHQDPSSPQTHNPKSIFRTHTRKGRSR----GNPWSHHRLSTKGKQILDSLLNP 120
           LQ +L PH+D SSP+ H PKS F++  R GRSR    G PWSHHRLST+G++I DSLLNP
Sbjct: 61  LQDLLLPHKDSSSPRPHLPKSTFKSRGRIGRSRDPNRGKPWSHHRLSTQGQRIHDSLLNP 120

Query: 121 ELDSSYFNEILLQFFETSPVELNFTPESVSFDILGIIKGLVFRNKNEVALR------NQK 180
           E D+S  NEILLQ FETSP  LNFT ESVS DILGIIKGLVF  KNE+ALR      N++
Sbjct: 121 EFDASSLNEILLQLFETSPEGLNFTSESVSLDILGIIKGLVFNKKNELALRVFDFFRNRE 180

Query: 181 DFASILNSSVIAVIISVLGKQGRASFAASLLHELRNNGLIIDIYAYTSLITAYASNGRYR 240
           DFASIL+SSVIAVIISVLGK+GRAS AASLLHELRN+G+ IDIYAYTSLITAYA+NGRYR
Sbjct: 181 DFASILSSSVIAVIISVLGKEGRASSAASLLHELRNDGVNIDIYAYTSLITAYANNGRYR 240

Query: 241 EAVMLFNKLEQEGYTPTLITYNIILNAYGKMGMPWSKIAAIVDSMKSFGVAPDLCTYNML 300
           EAVM+F KLE+EG  PTLITYN+ILN YGKMGMPWSKIAA+VDSMKS G+APD  TYN L
Sbjct: 241 EAVMVFKKLEEEGCRPTLITYNVILNVYGKMGMPWSKIAALVDSMKSSGIAPDSYTYNTL 300

Query: 301 ISSCCRGSLYKEAAEVFEEMKAAGFIPDKVTYNALLDVYGKSRRPKE 335
           ISSC RGSLY+EAAEVFEEMKAAGF PDKVTYNALLDVYGKSRRPKE
Sbjct: 301 ISSCRRGSLYEEAAEVFEEMKAAGFSPDKVTYNALLDVYGKSRRPKE 341

BLAST of Cp4.1LG04g07750 vs. ExPASy TrEMBL
Match: A0A6J1IBL6 (pentatricopeptide repeat-containing protein At5g02860 OS=Cucurbita maxima OX=3661 GN=LOC111471013 PE=4 SV=1)

HSP 1 Score: 463 bits (1191), Expect = 2.05e-154
Identity = 255/347 (73.49%), Postives = 282/347 (81.27%), Query Frame = 0

Query: 1   MADKVVLPLLLPNPPPSKPLISVFHHQPPSPSSPHTTLSFPPPQ--PQPLSSPSSPIAPL 60
           MADKV LPLLLPNPPPSKPL  VFHHQP S SSP      PPP       SS SS I+P+
Sbjct: 1   MADKVALPLLLPNPPPSKPLFPVFHHQPASHSSP------PPPSLSSSSSSSSSSHISPI 60

Query: 61  LQGILHPHQDPSSPQTHNPKSIFRTHTRKGRSR----GNPWSHHRLSTKGKQILDSLLNP 120
           LQ +L PH+D  SPQ H PKS F++ +R GRSR    G PWSHHRLST+G++I DSLL+P
Sbjct: 61  LQDLLLPHKDSYSPQPHLPKSTFKSRSRIGRSRDPNRGKPWSHHRLSTQGQRIHDSLLHP 120

Query: 121 ELDSSYFNEILLQFFETSPVELNFTPESVSFDILGIIKGLVFRNKNEVALR------NQK 180
           E D+S  NEILLQ FETSP  LNFT ESVS DI  IIKGLVF  KNE+ALR      N++
Sbjct: 121 EFDASSLNEILLQLFETSPEGLNFTSESVSLDISAIIKGLVFNKKNELALRVFDFVRNRE 180

Query: 181 DFASILNSSVIAVIISVLGKQGRASFAASLLHELRNNGLIIDIYAYTSLITAYASNGRYR 240
           DFASIL+SSVIAVIISVLGK+GRAS A+SLLHELRN+G+ IDIYAYTSLITAYA+NGRYR
Sbjct: 181 DFASILSSSVIAVIISVLGKEGRASSASSLLHELRNDGVNIDIYAYTSLITAYANNGRYR 240

Query: 241 EAVMLFNKLEQEGYTPTLITYNIILNAYGKMGMPWSKIAAIVDSMKSFGVAPDLCTYNML 300
           EAVM+F KLE+EG  PTLITYN+ILN YGKMGMPWSKIAA+VDSMKS G+APD  TYN L
Sbjct: 241 EAVMVFKKLEEEGCRPTLITYNVILNVYGKMGMPWSKIAALVDSMKSSGIAPDSYTYNTL 300

Query: 301 ISSCCRGSLYKEAAEVFEEMKAAGFIPDKVTYNALLDVYGKSRRPKE 335
           ISSC RGSLY+EAAEVFEEMKAAGF PDKVTYNALLDVYGKSRRPKE
Sbjct: 301 ISSCRRGSLYEEAAEVFEEMKAAGFSPDKVTYNALLDVYGKSRRPKE 341

BLAST of Cp4.1LG04g07750 vs. TAIR 10
Match: AT5G02860.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 310.1 bits (793), Expect = 2.2e-84
Identity = 177/346 (51.16%), Postives = 234/346 (67.63%), Query Frame = 0

Query: 1   MADKVVLPLLLPNPPPSKPLISVFHHQPPSPSSPHTTLSFPPPQPQPLSSPSSPIAPLLQ 60
           MADK+ LPLLLP  P SKP     +H         T+LS PPP          P+ PLL 
Sbjct: 1   MADKLALPLLLPCTPSSKPYSHDQNHHISRTPFLTTSLSSPPP---------PPVEPLLH 60

Query: 61  GILHPHQDPSSPQ-THNPKSIFRTHTRKGRSR----GNPWSHHRLSTKGKQILDSLLNPE 120
            +   HQ+P+S Q   +  S  R  TR G+SR    G PWS+H LS +G+Q+L SL+ P 
Sbjct: 61  DVF-LHQNPNSRQPISSQTSRNRNRTRIGKSRDPNLGKPWSYHGLSPQGQQVLRSLIEPN 120

Query: 121 LDSSYFNEILLQFFETSPVELNFTPESVSFDILGIIKGLVFRNKNEVALR------NQKD 180
            DS   + +L + FE         PES S ++L  +KGL F  K ++ALR       QKD
Sbjct: 121 FDSGQLDSVLSELFE----PFKDKPESTSSELLAFLKGLGFHKKFDLALRAFDWFMKQKD 180

Query: 181 FASILNSSVIAVIISVLGKQGRASFAASLLHELRNNGLIIDIYAYTSLITAYASNGRYRE 240
           + S+L++SV+A+IIS+LGK+GR S AA++ + L+ +G  +D+Y+YTSLI+A+A++GRYRE
Sbjct: 181 YQSMLDNSVVAIIISMLGKEGRVSSAANMFNGLQEDGFSLDVYSYTSLISAFANSGRYRE 240

Query: 241 AVMLFNKLEQEGYTPTLITYNIILNAYGKMGMPWSKIAAIVDSMKSFGVAPDLCTYNMLI 300
           AV +F K+E++G  PTLITYN+ILN +GKMG PW+KI ++V+ MKS G+APD  TYN LI
Sbjct: 241 AVNVFKKMEEDGCKPTLITYNVILNVFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLI 300

Query: 301 SSCCRGSLYKEAAEVFEEMKAAGFIPDKVTYNALLDVYGKSRRPKE 336
           + C RGSL++EAA+VFEEMKAAGF  DKVTYNALLDVYGKS RPKE
Sbjct: 301 TCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKE 332

BLAST of Cp4.1LG04g07750 vs. TAIR 10
Match: AT2G18940.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 141.7 bits (356), Expect = 1.1e-33
Identity = 110/345 (31.88%), Postives = 176/345 (51.01%), Query Frame = 0

Query: 10  LLPNPPPSKPLISVFHHQPPSPSSPHT------TLSFPPPQPQPLSSPSSPIAPLLQGIL 69
           L P+ PP  P+ S     PPS SS  +      TL  PPP P     PS P+  LL  ++
Sbjct: 5   LFPHKPP-YPIQS--KRPPPSQSSNQSIKFSSATLHLPPPSP-----PSFPLDSLLHHLV 64

Query: 70  H----PHQDPSSPQTHNPKSIFRTHTRKGR-------SRGNPWSHHRLSTKGKQILDSLL 129
           H    P +  +S     P     T +   +             S   L  K   +++S++
Sbjct: 65  HLSSPPPRHSNSAAARFPSLEVSTDSSSSKPILGIEIENERNGSLKLLCKKEVVLVNSIV 124

Query: 130 NPELDSSYFNEILLQFFETSPVELNFTPESVSFDILGIIKGLVFRNKNEVA-------LR 189
              L        L +FF++   EL  T      D++ ++KGL      E A       + 
Sbjct: 125 EQPLTG------LSRFFDSVKSELLRT------DLVSLVKGLDDSGHWERAVFLFEWLVL 184

Query: 190 NQKDFASILNSSVIAVIISVLGKQGRASFAASLLHELRNNGLIIDIYAYTSLITAYASNG 249
           +    A  L+  VI + + +LG++ + S AA LL ++     ++D+ AYT+++ AY+  G
Sbjct: 185 SSNSGALKLDHQVIEIFVRILGRESQYSVAAKLLDKIPLQEYLLDVRAYTTILHAYSRTG 244

Query: 250 RYREAVMLFNKLEQEGYTPTLITYNIILNAYGKMGMPWSKIAAIVDSMKSFGVAPDLCTY 309
           +Y +A+ LF ++++ G +PTL+TYN+IL+ +GKMG  W KI  ++D M+S G+  D  T 
Sbjct: 245 KYEKAIDLFERMKEMGPSPTLVTYNVILDVFGKMGRSWRKILGVLDEMRSKGLKFDEFTC 304

Query: 310 NMLISSCCRGSLYKEAAEVFEEMKAAGFIPDKVTYNALLDVYGKS 331
           + ++S+C R  L +EA E F E+K+ G+ P  VTYNALL V+GK+
Sbjct: 305 STVLSACAREGLLREAKEFFAELKSCGYEPGTVTYNALLQVFGKA 329

BLAST of Cp4.1LG04g07750 vs. TAIR 10
Match: AT1G74850.1 (plastid transcriptionally active 2 )

HSP 1 Score: 123.6 bits (309), Expect = 3.0e-28
Identity = 54/158 (34.18%), Postives = 94/158 (59.49%), Query Frame = 0

Query: 175 NSSVIAVIISVLGKQGRASFAASLLHELRNNGLIIDIYAYTSLITAYASNGRYREAVMLF 234
           N  +  ++IS+LG++G       +  E+ + G+   +++YT+LI AY  NGRY  ++ L 
Sbjct: 140 NEHIYTIMISLLGREGLLDKCLEVFDEMPSQGVSRSVFSYTALINAYGRNGRYETSLELL 199

Query: 235 NKLEQEGYTPTLITYNIILNAYGKMGMPWSKIAAIVDSMKSFGVAPDLCTYNMLISSCCR 294
           ++++ E  +P+++TYN ++NA  + G+ W  +  +   M+  G+ PD+ TYN L+S+C  
Sbjct: 200 DRMKNEKISPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPDIVTYNTLLSACAI 259

Query: 295 GSLYKEAAEVFEEMKAAGFIPDKVTYNALLDVYGKSRR 333
             L  EA  VF  M   G +PD  TY+ L++ +GK RR
Sbjct: 260 RGLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRR 297

BLAST of Cp4.1LG04g07750 vs. TAIR 10
Match: AT3G16010.1 (Pentatricopeptide repeat (PPR-like) superfamily protein )

HSP 1 Score: 110.2 bits (274), Expect = 3.4e-24
Identity = 59/176 (33.52%), Postives = 99/176 (56.25%), Query Frame = 0

Query: 160 NEVALRNQKDFASILNSSVIAVIISVLGKQGRASFAASLLHELRNNGLIIDIYAYTSLIT 219
           NE+    +++F ++ +S V AV+I   GK G+ S A  L +E++N G   D+YAY +L++
Sbjct: 464 NELFKELKENFGNV-SSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMS 523

Query: 220 AYASNGRYREAVMLFNKLEQEGYTPTLITYNIILNAYGKMGMPWSKIAAIVDSMKSFGVA 279
                G   EA  L  K+E+ G    + ++NIILN + + G+P  +   + +++K  G+ 
Sbjct: 524 GMVKAGMINEANSLLRKMEENGCRADINSHNIILNGFARTGVP-RRAIEMFETIKHSGIK 583

Query: 280 PDLCTYNMLISSCCRGSLYKEAAEVFEEMKAAGFIPDKVTYNALLDVYGKSRRPKE 336
           PD  TYN L+       +++EAA +  EMK  GF  D +TY+++LD  G     K+
Sbjct: 584 PDGVTYNTLLGCFAHAGMFEEAARMMREMKDKGFEYDAITYSSILDAVGNVDHEKD 637

BLAST of Cp4.1LG04g07750 vs. TAIR 10
Match: AT2G31400.1 (genomes uncoupled 1 )

HSP 1 Score: 108.6 bits (270), Expect = 9.9e-24
Identity = 89/317 (28.08%), Postives = 149/317 (47.00%), Query Frame = 0

Query: 24  FHHQPPSPSSPHTTLSFPPPQ------PQPLSSPSSPIAPLLQGILHPHQDPSSPQTHNP 83
           ++H+P   SS     S PPP       P  LS P     P    +  P  D SS  +   
Sbjct: 87  YNHRPYGASSSPRG-SAPPPSSVATVAPAQLSQP-----PNFSPLQTPKSDLSSDFSGRR 146

Query: 84  KSIFRTHTRKGRSRGNPWSHHRLSTKGKQILDSLLNPELDSSYFNEILLQFFETSPVELN 143
            + F +    GR +    + H  S+  +  L + ++   D   F+ ++L F         
Sbjct: 147 STRFVSKMHFGRQKTTMATRH--SSAAEDALQNAIDFSGDDEMFHSLMLSF--------- 206

Query: 144 FTPESVSFDILGIIKGLVFRNKNEVAL-----RNQKDFASILNSSVIAVIISVLGKQGRA 203
            +    S D   II+ L  RN+ + A+       +++        + + +IS LG+ G+ 
Sbjct: 207 ESKLCGSDDCTYIIRELGNRNECDKAVGFYEFAVKRERRKNEQGKLASAMISTLGRYGKV 266

Query: 204 SFAASLLHELRNNGLIIDIYAYTSLITAYASNGRYREAVMLFNKLEQEGYTPTLITYNII 263
           + A  +       G    +YA+++LI+AY  +G + EA+ +FN +++ G  P L+TYN +
Sbjct: 267 TIAKRIFETAFAGGYGNTVYAFSALISAYGRSGLHEEAISVFNSMKEYGLRPNLVTYNAV 326

Query: 264 LNAYGKMGMPWSKIAAIVDSMKSFGVAPDLCTYNMLISSCCRGSLYKEAAEVFEEMKAAG 323
           ++A GK GM + ++A   D M+  GV PD  T+N L++ C RG L++ A  +F+EM    
Sbjct: 327 IDACGKGGMEFKQVAKFFDEMQRNGVQPDRITFNSLLAVCSRGGLWEAARNLFDEMTNRR 386

Query: 324 FIPDKVTYNALLDVYGK 330
              D  +YN LLD   K
Sbjct: 387 IEQDVFSYNTLLDAICK 386

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q9LYZ93.2e-8351.16Pentatricopeptide repeat-containing protein At5g02860 OS=Arabidopsis thaliana OX... [more]
O646241.5e-3231.88Pentatricopeptide repeat-containing protein At2g18940, chloroplastic OS=Arabidop... [more]
B8Y6I01.8e-3031.66Pentatricopeptide repeat-containing protein 10, chloroplastic OS=Zea mays OX=457... [more]
Q9S7Q24.2e-2734.18Pentatricopeptide repeat-containing protein At1g74850, chloroplastic OS=Arabidop... [more]
Q9SIC91.4e-2228.08Pentatricopeptide repeat-containing protein At2g31400, chloroplastic OS=Arabidop... [more]
Match NameE-valueIdentityDescription
XP_038888056.17.64e-16878.39pentatricopeptide repeat-containing protein At5g02860 [Benincasa hispida][more]
KAA0031354.17.37e-16577.23pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK06806... [more]
XP_008455020.11.16e-16477.23PREDICTED: pentatricopeptide repeat-containing protein At5g02860 [Cucumis melo][more]
XP_023553783.19.34e-15974.93pentatricopeptide repeat-containing protein At5g02860 [Cucurbita pepo subsp. pep... [more]
KAG6571932.11.05e-15774.64Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma sub... [more]
Match NameE-valueIdentityDescription
A0A5A7SJN53.57e-16577.23Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946... [more]
A0A1S3C1505.62e-16577.23pentatricopeptide repeat-containing protein At5g02860 OS=Cucumis melo OX=3656 GN... [more]
A0A0A0K4H71.42e-15776.37Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G071530 PE=4 SV=1[more]
A0A6J1GLL12.87e-15774.64pentatricopeptide repeat-containing protein At5g02860 OS=Cucurbita moschata OX=3... [more]
A0A6J1IBL62.05e-15473.49pentatricopeptide repeat-containing protein At5g02860 OS=Cucurbita maxima OX=366... [more]
Match NameE-valueIdentityDescription
AT5G02860.12.2e-8451.16Pentatricopeptide repeat (PPR) superfamily protein [more]
AT2G18940.11.1e-3331.88Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT1G74850.13.0e-2834.18plastid transcriptionally active 2 [more]
AT3G16010.13.4e-2433.52Pentatricopeptide repeat (PPR-like) superfamily protein [more]
AT2G31400.19.9e-2428.08genomes uncoupled 1 [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 280..327
e-value: 7.0E-13
score: 48.6
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 247..281
e-value: 3.5E-6
score: 24.8
coord: 212..245
e-value: 6.1E-7
score: 27.2
coord: 283..316
e-value: 1.5E-10
score: 38.6
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 197..259
e-value: 9.6E-17
score: 60.8
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 210..244
score: 12.320559
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 281..315
score: 13.197463
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 245..280
score: 10.490022
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 176..339
e-value: 2.8E-42
score: 147.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..100
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 80..98
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 34..52
NoneNo IPR availablePANTHERPTHR47937PLASTID TRANSCRIPTIONALLY ACTIVE CHROMOSOME 2-LIKE PROTEINcoord: 177..334
coord: 126..260

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG04g07750.1Cp4.1LG04g07750.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding