Cp4.1LG04g06120 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG04g06120
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	60S ribosomal protein L7a
Location	Cp4.1LG04: 5413131 .. 5416325 (+)
RNA-Seq Expression	Cp4.1LG04g06120
Synteny	Cp4.1LG04g06120

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATGTGTTTTTGCTTGGATGACTGAGCCCGAAAACTATGTATCATGATTGCATTGCTGTTATGTTTTCTGCGATTTTAAGTTTTGAAATTTCTAGATGCATTTTTTTATCGGGTTTTGAGAGAAGTTTTCCTCTCGATCGTCTGGAAAATGGTGTTTCATTTCTTGCTTTTTAAATCACGAGGTTTTGATCACTGGATCTGTTTGGCTTATATTGATATGAAGCAGTTTCTGTCGGAGGTTGATTTTGATATGTTTTTGGCTTCTTTTGAAAAATGCTTGCTAGGTAGATTGACTGAGTTGAGACTTAAGAGACATTCACTTTTTGGATTTAGCCACTTAGTGTTCTTTCATGGCCGCTCTTGGTTTTCAGGCCTTTACTACTTATTAGCATATTGATCATCATTTTATTATCAAATACAATTCATGGCAGCTACACTTGTAACATTAGCACTAATAGGCTTGAATGTAGTCCAGTTGGTAAAAGCGTCAGTTGCCTTACCTCAAGGTTATTGATTGAATTCACATCCCTTGTTTGAATTGTAGTATACTGAAAAAACACTTATGTAATCAAATTATGATAGTTGTACCTTGCAACAAAATATGAAGAAAATGGTTTTGTACAAAATTGAAGTGTTTTTATGATTTCTTTTAATCCTTTCAAGACTCTAGGAGAGATAGAAGTCTACACGTATTAAGATGTAAGATTAAATTCCTTCCTCTTCAACTTTTTGTCATTATACTTGAATCCCTCTTTGTGTATTATAGTTGATTTGTTCTCTTTATGATTTCTTAGATGTTTACATCTTTGCCTGGAATGAAATTTGCTAACATCATTTTATTGTATTTTTAAAGGCGCCAAAGAAAGCTGTTGGAAAAGCCTTGGCGAAAAAGAAGGCTGTAAGTGATTCTTTTCCTTGATGAATGTTTTCTTTTTTATTATGGTTCTGGTTTTTTTTGGCTGTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTAATACAGTGTTGTGTGTTGTTAACAGGAGAAGGTGGTGAACCCACTATTTGAGAAGCGGCCGAAGCAGTTCGGAATTGGTGGTGCATTGCCACCAAAGAGGGATTTGACAAGGTTTGTCAAATGGCCAAAAGCTGTTCAAATTCAGAGGAAGAAGAGGATTCTTAAGCAGAGGTTGAAGGTTCCACCAGCTTTGAATCAGTTCACTAAAACCCTTGACAAAAATCTTGGTAAACTATTAGATTTTAGTTGTGATTGTTGTCTAGTTCTTTTAAGGTATGCCTTTTAACCATATTGGATTAATGAGGTTCTTGTTTGACCTTGCAAATATATTTTCAAAGTTGATTACTGCTGATCATAAACTTCAGTCTCTGAATCTAGATTGCTGATTGATCCGTGCCTTCATTTTTACTGATGGGTTTTTATTACTTTTGCTTCTCACTTTGGTCAATTGGAAAAATGTAATAGAAAATTCCTCATCTGATTCCAACAATTGTGTCTGGTCAACATTTATTTTGTTTTGGTTAGATTATATGTATACTGTTTCCTTTACCTCTGTTCTTTGAATTGATATCAAGTTCAATATGTAATGTGTATACAGCCACAAACCTGTTCAAGATGCTTTTGAAGTATAGGCCAGAGGACAAGGCACAGAAAAGGGAGCGTCTTATTAAGAGAGCTCAGGAAGAGGCTGAAGGCAAGCCACATGATGCCAAGAAACCTATTGTTGTTAAATACGGTCTCAACCATGTCACCTATCTCATTGAGCAGGTTTTATTTTGTTCGGTCGTCGTACATTTGAATATTTTCGTTATCCAACTGTTATACTGCCTGGAATCATATATACTCATGATGTGAACTTCCTTTCCAGAACAAGGCACAGTTGGTGGTGATCGCCCATGATGTGGATCCAATTGAGCTCGTTGTTTGGCTCCCGGCCCTCTGCAGGAAGATGGAAATTCCATACTGCATTGTTAAGGGAAAAGCACGATTGGGAGCGGTAATACGACCGTTTATTTGCGATACGTTCCACTCTTTTGAATCGCAAGTACCAATGCTTTTAATTTTTCCCTTATAACAGATTGTCCATCAAAAGACAGCATCAGTTTTGTGCTTGACAACCGTGAAGAACGAAGATAAGTTGGAGTTCAGCAGGATCCTCGAAGCTATTAAGGTGATTTACGTAATCCTTTTCGTCGCTTCTTAGCTAACGTTGCGATTTGATTGGCGTAGTTTTAATATCGCGTCGGTTGTTTGATTTAGGCCAATTTCAACGACAAGTACGACGAGTACAGGAAGAAATGGGGTGGTGGAATCATGGGTTCCAAGTCCCAGGCTAAAACTAAAGCAAAGGAGAGGCTTCTCGCCAAAGAAGCTGCTCAAAGAATGTCTTAGAGATGAGAGTTGGCAACTATTTTTGGGTCATAGCTTCTTCAACATCATCATGAGAGAATTTAGAAGTTTTGTTTACTTTTCTTCATTTGCTACTCATTTGCTGATTTCAGATCTAGTTTTGTTGTTGCAGACTCTTTTAATGGTTAATACTTTTGATCTCAAATCCTCACACAAAGATGTTCGACTATAGGATGGGGATGGGGAAGCCTTCTTCGACCCTGTCACGTATTTCATTTCTCCATCTCCATAAAAGTATTCATTTATTTTCAAGGATTGGTTTTTTTGGGAATCCCGTGGGGATGGAGAAGCCTTCTTCGTCTTCATCCTTGTGGAGAGTTTGTGAGGATCCCGAGTGGATGGATAAGTGTTCTTCGTCCCGAAATCTTCTTTTATTTTTGTTTATCACTCATGCTAAGAAGGAAGGCCTGGATGATTTGCTCAAACTTAGTTCCAGTATTTGCCCTTCCTTTGATCCGCTCAAACTCGTTTCAGTATTTACCTTCCTTTAAATGCCTGAGTGAGTTCGCCCCTCCATCTGTGGAAACTGAGGATGAGTCCAATATTAGGGCATTAAACTGCAATATCTTAGGCTATTTCGAAACAACTGCAATA

mRNA sequence

ATGAATGCGCCAAAGAAAGCTGTTGGAAAAGCCTTGGCGAAAAAGAAGGCTGAGAAGGTGGTGAACCCACTATTTGAGAAGCGGCCGAAGCAGTTCGGAATTGGTGGTGCATTGCCACCAAAGAGGGATTTGACAAGGCCAGAGGACAAGGCACAGAAAAGGGAGCGTCTTATTAAGAGAGCTCAGGAAGAGGCTGAAGGCAAGCCACATGATGCCAAGAAACCTATTGTTGTTAAATACGGTCTCAACCATGTCACCTATCTCATTGAGCAGAACAAGGCACAGTTGGTGGTGATCGCCCATGATGTGGATCCAATTGAGCTCGTTGTTTGGCTCCCGGCCCTCTGCAGGAAGATGGAAATTCCATACTGCATTGTTAAGGGAAAAGCACGATTGGGAGCGATTGTCCATCAAAAGACAGCATCAGTTTTGTGCTTGACAACCGTGAAGAACGAAGATAAGTTGGAGTTCAGCAGGATCCTCGAAGCTATTAAGGCCAATTTCAACGACAAGTACGACGAGTACAGGAAGAAATGGGGTGGTGGAATCATGGGTTCCAAGTCCCAGGCTAAAACTAAAGCAAAGGAGAGGCTTCTCGCCAAAGAAGCTGCTCAAAGAATGTCTTAGAGATGAGAGTTGGCAACTATTTTTGGGTCATAGCTTCTTCAACATCATCATGAGAGAATTTAGAAGTTTTGTTTACTTTTCTTCATTTGCTACTCATTTGCTGATTTCAGATCTAGTTTTGTTGTTGCAGACTCTTTTAATGGTTAATACTTTTGATCTCAAATCCTCACACAAAGATGTTCGACTATAGGATGGGGATGGGGAAGCCTTCTTCGACCCTGTCACGTATTTCATTTCTCCATCTCCATAAAAGTATTCATTTATTTTCAAGGATTGGTTTTTTTGGGAATCCCGTGGGGATGGAGAAGCCTTCTTCGTCTTCATCCTTGTGGAGAGTTTGTGAGGATCCCGAGTGGATGGATAAGTGTTCTTCGTCCCGAAATCTTCTTTTATTTTTGTTTATCACTCATGCTAAGAAGGAAGGCCTGGATGATTTGCTCAAACTTAGTTCCAGTATTTGCCCTTCCTTTGATCCGCTCAAACTCGTTTCAGTATTTACCTTCCTTTAAATGCCTGAGTGAGTTCGCCCCTCCATCTGTGGAAACTGAGGATGAGTCCAATATTAGGGCATTAAACTGCAATATCTTAGGCTATTTCGAAACAACTGCAATA

Coding sequence (CDS)

ATGAATGCGCCAAAGAAAGCTGTTGGAAAAGCCTTGGCGAAAAAGAAGGCTGAGAAGGTGGTGAACCCACTATTTGAGAAGCGGCCGAAGCAGTTCGGAATTGGTGGTGCATTGCCACCAAAGAGGGATTTGACAAGGCCAGAGGACAAGGCACAGAAAAGGGAGCGTCTTATTAAGAGAGCTCAGGAAGAGGCTGAAGGCAAGCCACATGATGCCAAGAAACCTATTGTTGTTAAATACGGTCTCAACCATGTCACCTATCTCATTGAGCAGAACAAGGCACAGTTGGTGGTGATCGCCCATGATGTGGATCCAATTGAGCTCGTTGTTTGGCTCCCGGCCCTCTGCAGGAAGATGGAAATTCCATACTGCATTGTTAAGGGAAAAGCACGATTGGGAGCGATTGTCCATCAAAAGACAGCATCAGTTTTGTGCTTGACAACCGTGAAGAACGAAGATAAGTTGGAGTTCAGCAGGATCCTCGAAGCTATTAAGGCCAATTTCAACGACAAGTACGACGAGTACAGGAAGAAATGGGGTGGTGGAATCATGGGTTCCAAGTCCCAGGCTAAAACTAAAGCAAAGGAGAGGCTTCTCGCCAAAGAAGCTGCTCAAAGAATGTCTTAG

Protein sequence

MNAPKKAVGKALAKKKAEKVVNPLFEKRPKQFGIGGALPPKRDLTRPEDKAQKRERLIKRAQEEAEGKPHDAKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKARLGAIVHQKTASVLCLTTVKNEDKLEFSRILEAIKANFNDKYDEYRKKWGGGIMGSKSQAKTKAKERLLAKEAAQRMS

Homology

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BLAST of Cp4.1LG04g06120 vs. ExPASy Swiss-Prot
Match: P49692 (60S ribosomal protein L7a-1 OS=Arabidopsis thaliana OX=3702 GN=RPL7AA PE=2 SV=2)

HSP 1 Score: 331.6 bits (849), Expect = 6.2e-90
Identity = 179/256 (69.92%), Postives = 195/256 (76.17%), Query Frame = 0


Query: 3   APKKAVGKALAKKKAEKVVNPLFEKRPKQFGIGGALPPKRDLT----------------- 62
           APKK V  A  KK AEKV NPLFE+RPKQFGIGGALPPK+DL+                 
Sbjct: 2   APKKGVKVAAKKKTAEKVSNPLFERRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQKRI 61

Query: 63  ---------------------------------RPEDKAQKRERLIKRAQEEAEGKPHDA 122
                                            RPEDKA K+ERL+K+AQ EAEGKP ++
Sbjct: 62  LKQRLKVPPALNQFTKTLDKNLATSLFKVLLKYRPEDKAAKKERLVKKAQAEAEGKPSES 121

Query: 123 KKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKARL 182
           KKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKME+PYCIVKGK+RL
Sbjct: 122 KKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKSRL 181

Query: 183 GAIVHQKTASVLCLTTVKNEDKLEFSRILEAIKANFNDKYDEYRKKWGGGIMGSKSQAKT 209
           GA+VHQKTAS LCLTTVKNEDKLEFS+ILEAIKANFNDKY+EYRKKWGGGIMGSKSQAKT
Sbjct: 182 GAVVHQKTASCLCLTTVKNEDKLEFSKILEAIKANFNDKYEEYRKKWGGGIMGSKSQAKT 241

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BLAST of Cp4.1LG04g06120 vs. ExPASy Swiss-Prot
Match: Q9LZH9 (60S ribosomal protein L7a-2 OS=Arabidopsis thaliana OX=3702 GN=RPL7AB PE=1 SV=1)

HSP 1 Score: 327.4 bits (838), Expect = 1.2e-88
Identity = 177/256 (69.14%), Postives = 195/256 (76.17%), Query Frame = 0


Query: 3   APKKAVGKALAKKKAEKVVNPLFEKRPKQFGIGGALPPKRDLT----------------- 62
           APKK V K  +KKK EKV NPLFE+RPKQFGIGGALPPK+DL+                 
Sbjct: 2   APKKGV-KVASKKKPEKVTNPLFERRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQKRI 61

Query: 63  ---------------------------------RPEDKAQKRERLIKRAQEEAEGKPHDA 122
                                            RPEDKA K+ERL+ +AQ EAEGKP ++
Sbjct: 62  LKQRLKVPPALNQFTKTLDKNLATSLFKILLKYRPEDKAAKKERLLNKAQAEAEGKPAES 121

Query: 123 KKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKARL 182
           KKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKME+PYCIVKGK+RL
Sbjct: 122 KKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKSRL 181

Query: 183 GAIVHQKTASVLCLTTVKNEDKLEFSRILEAIKANFNDKYDEYRKKWGGGIMGSKSQAKT 209
           GA+VHQKTA+ LCLTTVKNEDKLEFS+ILEAIKANFNDKY+EYRKKWGGGIMGSKSQAKT
Sbjct: 182 GAVVHQKTAAALCLTTVKNEDKLEFSKILEAIKANFNDKYEEYRKKWGGGIMGSKSQAKT 241

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BLAST of Cp4.1LG04g06120 vs. ExPASy Swiss-Prot
Match: P35685 (60S ribosomal protein L7a-1 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL7A-1 PE=2 SV=1)

HSP 1 Score: 319.7 bits (818), Expect = 2.4e-86
Identity = 179/258 (69.38%), Postives = 195/258 (75.58%), Query Frame = 0


Query: 3   APKKAVGKA--LAKKKAEKVVNPLFEKRPKQFGIGGALPPKRDL---------------- 62
           APK+  G+A   AKKK EKV NPLFEKRPKQFGIGGALPPK+DL                
Sbjct: 2   APKRG-GRAPVPAKKKTEKVTNPLFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQR 61

Query: 63  ----------------------------------TRPEDKAQKRERLIKRAQEEAEGKPH 122
                                              RPEDKA K+ERL+KRAQ EAEGK  
Sbjct: 62  RILKQRLKVPPALNQFTRTLDKNLATNLFKMLLKYRPEDKAAKKERLLKRAQAEAEGKTV 121

Query: 123 DAKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKA 182
           +AKKPIVVKYGLNHVTYLIEQ+KAQLVVIAHDVDPIELVVWLPALCRKME+PYCIVKGKA
Sbjct: 122 EAKKPIVVKYGLNHVTYLIEQSKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKA 181

Query: 183 RLGAIVHQKTASVLCLTTVKNEDKLEFSRILEAIKANFNDKYDEYRKKWGGGIMGSKSQA 209
           RLG+IVH+KTASVLCLTTVKNEDKLEFS+ILEAIKANFNDK+DE RKKWGGG+MGSKSQA
Sbjct: 182 RLGSIVHKKTASVLCLTTVKNEDKLEFSKILEAIKANFNDKFDEVRKKWGGGVMGSKSQA 241

[Close]

BLAST of Cp4.1LG04g06120 vs. ExPASy Swiss-Prot
Match: P0DKK7 (60S ribosomal protein L7a-2 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL7A-2 PE=2 SV=1)

HSP 1 Score: 319.7 bits (818), Expect = 2.4e-86
Identity = 179/258 (69.38%), Postives = 195/258 (75.58%), Query Frame = 0


Query: 3   APKKAVGKA--LAKKKAEKVVNPLFEKRPKQFGIGGALPPKRDL---------------- 62
           APK+  G+A   AKKK EKV NPLFEKRPKQFGIGGALPPK+DL                
Sbjct: 2   APKRG-GRAPVPAKKKTEKVTNPLFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQR 61

Query: 63  ----------------------------------TRPEDKAQKRERLIKRAQEEAEGKPH 122
                                              RPEDKA K+ERL+KRAQ EAEGK  
Sbjct: 62  RILKQRLKVPPALNQFTRTLDKNLATNLFKMLLKYRPEDKAAKKERLLKRAQAEAEGKTV 121

Query: 123 DAKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKA 182
           +AKKPIVVKYGLNHVTYLIEQ+KAQLVVIAHDVDPIELVVWLPALCRKME+PYCIVKGKA
Sbjct: 122 EAKKPIVVKYGLNHVTYLIEQSKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKA 181

Query: 183 RLGAIVHQKTASVLCLTTVKNEDKLEFSRILEAIKANFNDKYDEYRKKWGGGIMGSKSQA 209
           RLG+IVH+KTASVLCLTTVKNEDKLEFS+ILEAIKANFNDK+DE RKKWGGG+MGSKSQA
Sbjct: 182 RLGSIVHKKTASVLCLTTVKNEDKLEFSKILEAIKANFNDKFDEVRKKWGGGVMGSKSQA 241

[Close]

BLAST of Cp4.1LG04g06120 vs. ExPASy Swiss-Prot
Match: Q2TBQ5 (60S ribosomal protein L7a OS=Bos taurus OX=9913 GN=RPL7A PE=2 SV=3)

HSP 1 Score: 203.0 bits (515), Expect = 3.3e-51
Identity = 119/261 (45.59%), Postives = 158/261 (60.54%), Query Frame = 0


Query: 5   KKAVGKALA-------KKKAEKVVNPLFEKRPKQFGIGGALPPKRDLT------------ 64
           KKA GK +A       K++A+KVVNPLFEKRPK FGIG  + PKRDLT            
Sbjct: 5   KKAKGKKVAPAPAVVKKQEAKKVVNPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRYIRLQ 64

Query: 65  --------------------------------------RPEDKAQKRERLIKRAQEEAEG 124
                                                 RPE K +K++RL+ RA+++A G
Sbjct: 65  RQRAILYKRLKVPPAINQFTQALDRQTATQLLKLAHKYRPETKQEKKQRLLARAEKKAAG 124

Query: 125 KPH-DAKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIV 184
           K     K+P V++ G+N VT L+E  KAQLVVIAHDVDPIELVV+LPALCRKM +PYCI+
Sbjct: 125 KGDVPTKRPPVLRAGVNTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCII 184

Query: 185 KGKARLGAIVHQKTASVLCLTTVKNEDKLEFSRILEAIKANFNDKYDEYRKKWGGGIMGS 208
           KGKARLG +VH+KT + +  T V +EDK   ++++EAI+ N+ND+YDE R+ WGG ++G 
Sbjct: 185 KGKARLGRLVHRKTCTTVAFTQVNSEDKSALAKLVEAIRTNYNDRYDEIRRHWGGNVLGP 244

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BLAST of Cp4.1LG04g06120 vs. NCBI nr
Match: XP_022928506.1 (60S ribosomal protein L7a-1 [Cucurbita moschata] >XP_022989710.1 60S ribosomal protein L7a-1 [Cucurbita maxima] >XP_023531601.1 60S ribosomal protein L7a-1 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023531602.1 60S ribosomal protein L7a-1 isoform X2 [Cucurbita pepo subsp. pepo] >KAG6588885.1 60S ribosomal protein L7a-2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7022649.1 60S ribosomal protein L7a-2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 370 bits (951), Expect = 7.39e-128
Identity = 206/256 (80.47%), Postives = 206/256 (80.47%), Query Frame = 0


Query: 3   APKKAVGKALAKKKAEKVVNPLFEKRPKQFGIGGALPPKRDLTR---------------- 62
           APKKAVGKALAKKKAEKVVNPLFEKRPKQFGIGGALPPKRDLTR                
Sbjct: 2   APKKAVGKALAKKKAEKVVNPLFEKRPKQFGIGGALPPKRDLTRFVKWPKAVQIQRKKRI 61

Query: 63  ----------------------------------PEDKAQKRERLIKRAQEEAEGKPHDA 122
                                             PEDKAQKRERLIKRAQEEAEGKPHDA
Sbjct: 62  LKQRLKVPPALNQFTKTLDKNLATNLFKMLLKYRPEDKAQKRERLIKRAQEEAEGKPHDA 121

Query: 123 KKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKARL 182
           KKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKARL
Sbjct: 122 KKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKARL 181

Query: 183 GAIVHQKTASVLCLTTVKNEDKLEFSRILEAIKANFNDKYDEYRKKWGGGIMGSKSQAKT 208
           GAIVHQKTASVLCLTTVKNEDKLEFSRILEAIKANFNDKYDEYRKKWGGGIMGSKSQAKT
Sbjct: 182 GAIVHQKTASVLCLTTVKNEDKLEFSRILEAIKANFNDKYDEYRKKWGGGIMGSKSQAKT 241

[Close]

BLAST of Cp4.1LG04g06120 vs. NCBI nr
Match: XP_022983551.1 (60S ribosomal protein L7a-2-like [Cucurbita maxima])

HSP 1 Score: 365 bits (937), Expect = 1.00e-125
Identity = 203/256 (79.30%), Postives = 204/256 (79.69%), Query Frame = 0


Query: 3   APKKAVGKALAKKKAEKVVNPLFEKRPKQFGIGGALPPKRDLTR---------------- 62
           APKKAVGKALAKKK EKVVNPLFEKRPKQFGIGGALPPKRDLTR                
Sbjct: 2   APKKAVGKALAKKKPEKVVNPLFEKRPKQFGIGGALPPKRDLTRFVKWPKAVQIQRKKRI 61

Query: 63  ----------------------------------PEDKAQKRERLIKRAQEEAEGKPHDA 122
                                             PEDKAQKRERL+KRAQEEAEGK HDA
Sbjct: 62  LKQRLKVPPALNQFTKTLDKNLATNLFKMLLKYRPEDKAQKRERLVKRAQEEAEGKAHDA 121

Query: 123 KKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKARL 182
           KKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKARL
Sbjct: 122 KKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKARL 181

Query: 183 GAIVHQKTASVLCLTTVKNEDKLEFSRILEAIKANFNDKYDEYRKKWGGGIMGSKSQAKT 208
           GAIVHQKTASVLCLTTVKNEDKLEFSRILEAIKANFNDKYDEYRKKWGGGIMGSKSQAKT
Sbjct: 182 GAIVHQKTASVLCLTTVKNEDKLEFSRILEAIKANFNDKYDEYRKKWGGGIMGSKSQAKT 241

[Close]

BLAST of Cp4.1LG04g06120 vs. NCBI nr
Match: XP_022928907.1 (60S ribosomal protein L7a-2 isoform X2 [Cucurbita moschata] >XP_022970186.1 60S ribosomal protein L7a-2 [Cucurbita maxima] >XP_022970187.1 60S ribosomal protein L7a-2 [Cucurbita maxima] >XP_023551211.1 60S ribosomal protein L7a-2 [Cucurbita pepo subsp. pepo] >KAG7017115.1 60S ribosomal protein L7a-2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 365 bits (936), Expect = 1.42e-125
Identity = 203/256 (79.30%), Postives = 204/256 (79.69%), Query Frame = 0


Query: 3   APKKAVGKALAKKKAEKVVNPLFEKRPKQFGIGGALPPKRDLTR---------------- 62
           APKKAVGKALAKKK EKVVNPLFEKRPKQFGIGGALPPKRDLTR                
Sbjct: 2   APKKAVGKALAKKKPEKVVNPLFEKRPKQFGIGGALPPKRDLTRFVKWPKAVQIQRKKRI 61

Query: 63  ----------------------------------PEDKAQKRERLIKRAQEEAEGKPHDA 122
                                             PEDKAQKRERL+KRAQEEAEGK HDA
Sbjct: 62  LKQRLKVPPALNQFTKTLDKNLATNLFKMLLKYRPEDKAQKRERLLKRAQEEAEGKSHDA 121

Query: 123 KKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKARL 182
           KKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKARL
Sbjct: 122 KKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKARL 181

Query: 183 GAIVHQKTASVLCLTTVKNEDKLEFSRILEAIKANFNDKYDEYRKKWGGGIMGSKSQAKT 208
           GAIVHQKTASVLCLTTVKNEDKLEFSRILEAIKANFNDKYDEYRKKWGGGIMGSKSQAKT
Sbjct: 182 GAIVHQKTASVLCLTTVKNEDKLEFSRILEAIKANFNDKYDEYRKKWGGGIMGSKSQAKT 241

[Close]

BLAST of Cp4.1LG04g06120 vs. NCBI nr
Match: XP_022934368.1 (60S ribosomal protein L7a-2 [Cucurbita moschata] >XP_023527406.1 60S ribosomal protein L7a-2 [Cucurbita pepo subsp. pepo] >KAG6581109.1 60S ribosomal protein L7a-2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7017841.1 60S ribosomal protein L7a-2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 365 bits (936), Expect = 1.42e-125
Identity = 203/256 (79.30%), Postives = 204/256 (79.69%), Query Frame = 0


Query: 3   APKKAVGKALAKKKAEKVVNPLFEKRPKQFGIGGALPPKRDLTR---------------- 62
           APKKAVGKALAKKK EKVVNPLFEKRPKQFGIGGALPPKRDLTR                
Sbjct: 2   APKKAVGKALAKKKPEKVVNPLFEKRPKQFGIGGALPPKRDLTRFVKWPKAVQIQRKKRI 61

Query: 63  ----------------------------------PEDKAQKRERLIKRAQEEAEGKPHDA 122
                                             PEDKAQKRERL+KRAQEEAEGK HDA
Sbjct: 62  LKQRLKVPPALNQFTKTLDKNLATNLFKMLLKYRPEDKAQKRERLLKRAQEEAEGKAHDA 121

Query: 123 KKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKARL 182
           KKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKARL
Sbjct: 122 KKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKARL 181

Query: 183 GAIVHQKTASVLCLTTVKNEDKLEFSRILEAIKANFNDKYDEYRKKWGGGIMGSKSQAKT 208
           GAIVHQKTASVLCLTTVKNEDKLEFSRILEAIKANFNDKYDEYRKKWGGGIMGSKSQAKT
Sbjct: 182 GAIVHQKTASVLCLTTVKNEDKLEFSRILEAIKANFNDKYDEYRKKWGGGIMGSKSQAKT 241

[Close]

BLAST of Cp4.1LG04g06120 vs. NCBI nr
Match: KAG6579663.1 (60S ribosomal protein L7a-2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 363 bits (933), Expect = 4.08e-125
Identity = 202/256 (78.91%), Postives = 204/256 (79.69%), Query Frame = 0


Query: 3   APKKAVGKALAKKKAEKVVNPLFEKRPKQFGIGGALPPKRDLTR---------------- 62
           APKKAVGKAL+KKK EKVVNPLFEKRPKQFGIGGALPPKRDLTR                
Sbjct: 2   APKKAVGKALSKKKPEKVVNPLFEKRPKQFGIGGALPPKRDLTRFVKWPKAVQIQRKKRI 61

Query: 63  ----------------------------------PEDKAQKRERLIKRAQEEAEGKPHDA 122
                                             PEDKAQKRERL+KRAQEEAEGK HDA
Sbjct: 62  LKQRLKVPPALNQFTKTLDKNLATNLFKMLLKYRPEDKAQKRERLLKRAQEEAEGKSHDA 121

Query: 123 KKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKARL 182
           KKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKARL
Sbjct: 122 KKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKARL 181

Query: 183 GAIVHQKTASVLCLTTVKNEDKLEFSRILEAIKANFNDKYDEYRKKWGGGIMGSKSQAKT 208
           GAIVHQKTASVLCLTTVKNEDKLEFSRILEAIKANFNDKYDEYRKKWGGGIMGSKSQAKT
Sbjct: 182 GAIVHQKTASVLCLTTVKNEDKLEFSRILEAIKANFNDKYDEYRKKWGGGIMGSKSQAKT 241

[Close]

BLAST of Cp4.1LG04g06120 vs. ExPASy TrEMBL
Match: A0A6J1JN50 (60S ribosomal protein L7a OS=Cucurbita maxima OX=3661 GN=LOC111486710 PE=3 SV=1)

HSP 1 Score: 370 bits (951), Expect = 3.58e-128
Identity = 206/256 (80.47%), Postives = 206/256 (80.47%), Query Frame = 0


Query: 3   APKKAVGKALAKKKAEKVVNPLFEKRPKQFGIGGALPPKRDLTR---------------- 62
           APKKAVGKALAKKKAEKVVNPLFEKRPKQFGIGGALPPKRDLTR                
Sbjct: 2   APKKAVGKALAKKKAEKVVNPLFEKRPKQFGIGGALPPKRDLTRFVKWPKAVQIQRKKRI 61

Query: 63  ----------------------------------PEDKAQKRERLIKRAQEEAEGKPHDA 122
                                             PEDKAQKRERLIKRAQEEAEGKPHDA
Sbjct: 62  LKQRLKVPPALNQFTKTLDKNLATNLFKMLLKYRPEDKAQKRERLIKRAQEEAEGKPHDA 121

Query: 123 KKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKARL 182
           KKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKARL
Sbjct: 122 KKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKARL 181

Query: 183 GAIVHQKTASVLCLTTVKNEDKLEFSRILEAIKANFNDKYDEYRKKWGGGIMGSKSQAKT 208
           GAIVHQKTASVLCLTTVKNEDKLEFSRILEAIKANFNDKYDEYRKKWGGGIMGSKSQAKT
Sbjct: 182 GAIVHQKTASVLCLTTVKNEDKLEFSRILEAIKANFNDKYDEYRKKWGGGIMGSKSQAKT 241

[Close]

BLAST of Cp4.1LG04g06120 vs. ExPASy TrEMBL
Match: A0A6J1EKG8 (60S ribosomal protein L7a OS=Cucurbita moschata OX=3662 GN=LOC111435292 PE=3 SV=1)

HSP 1 Score: 370 bits (951), Expect = 3.58e-128
Identity = 206/256 (80.47%), Postives = 206/256 (80.47%), Query Frame = 0


Query: 3   APKKAVGKALAKKKAEKVVNPLFEKRPKQFGIGGALPPKRDLTR---------------- 62
           APKKAVGKALAKKKAEKVVNPLFEKRPKQFGIGGALPPKRDLTR                
Sbjct: 2   APKKAVGKALAKKKAEKVVNPLFEKRPKQFGIGGALPPKRDLTRFVKWPKAVQIQRKKRI 61

Query: 63  ----------------------------------PEDKAQKRERLIKRAQEEAEGKPHDA 122
                                             PEDKAQKRERLIKRAQEEAEGKPHDA
Sbjct: 62  LKQRLKVPPALNQFTKTLDKNLATNLFKMLLKYRPEDKAQKRERLIKRAQEEAEGKPHDA 121

Query: 123 KKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKARL 182
           KKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKARL
Sbjct: 122 KKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKARL 181

Query: 183 GAIVHQKTASVLCLTTVKNEDKLEFSRILEAIKANFNDKYDEYRKKWGGGIMGSKSQAKT 208
           GAIVHQKTASVLCLTTVKNEDKLEFSRILEAIKANFNDKYDEYRKKWGGGIMGSKSQAKT
Sbjct: 182 GAIVHQKTASVLCLTTVKNEDKLEFSRILEAIKANFNDKYDEYRKKWGGGIMGSKSQAKT 241

[Close]

BLAST of Cp4.1LG04g06120 vs. ExPASy TrEMBL
Match: A0A6J1J2M5 (60S ribosomal protein L7a OS=Cucurbita maxima OX=3661 GN=LOC111482120 PE=3 SV=1)

HSP 1 Score: 365 bits (937), Expect = 4.85e-126
Identity = 203/256 (79.30%), Postives = 204/256 (79.69%), Query Frame = 0


Query: 3   APKKAVGKALAKKKAEKVVNPLFEKRPKQFGIGGALPPKRDLTR---------------- 62
           APKKAVGKALAKKK EKVVNPLFEKRPKQFGIGGALPPKRDLTR                
Sbjct: 2   APKKAVGKALAKKKPEKVVNPLFEKRPKQFGIGGALPPKRDLTRFVKWPKAVQIQRKKRI 61

Query: 63  ----------------------------------PEDKAQKRERLIKRAQEEAEGKPHDA 122
                                             PEDKAQKRERL+KRAQEEAEGK HDA
Sbjct: 62  LKQRLKVPPALNQFTKTLDKNLATNLFKMLLKYRPEDKAQKRERLVKRAQEEAEGKAHDA 121

Query: 123 KKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKARL 182
           KKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKARL
Sbjct: 122 KKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKARL 181

Query: 183 GAIVHQKTASVLCLTTVKNEDKLEFSRILEAIKANFNDKYDEYRKKWGGGIMGSKSQAKT 208
           GAIVHQKTASVLCLTTVKNEDKLEFSRILEAIKANFNDKYDEYRKKWGGGIMGSKSQAKT
Sbjct: 182 GAIVHQKTASVLCLTTVKNEDKLEFSRILEAIKANFNDKYDEYRKKWGGGIMGSKSQAKT 241

[Close]

BLAST of Cp4.1LG04g06120 vs. ExPASy TrEMBL
Match: A0A6J1HZX8 (60S ribosomal protein L7a OS=Cucurbita maxima OX=3661 GN=LOC111469156 PE=3 SV=1)

HSP 1 Score: 365 bits (936), Expect = 6.89e-126
Identity = 203/256 (79.30%), Postives = 204/256 (79.69%), Query Frame = 0


Query: 3   APKKAVGKALAKKKAEKVVNPLFEKRPKQFGIGGALPPKRDLTR---------------- 62
           APKKAVGKALAKKK EKVVNPLFEKRPKQFGIGGALPPKRDLTR                
Sbjct: 2   APKKAVGKALAKKKPEKVVNPLFEKRPKQFGIGGALPPKRDLTRFVKWPKAVQIQRKKRI 61

Query: 63  ----------------------------------PEDKAQKRERLIKRAQEEAEGKPHDA 122
                                             PEDKAQKRERL+KRAQEEAEGK HDA
Sbjct: 62  LKQRLKVPPALNQFTKTLDKNLATNLFKMLLKYRPEDKAQKRERLLKRAQEEAEGKSHDA 121

Query: 123 KKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKARL 182
           KKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKARL
Sbjct: 122 KKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKARL 181

Query: 183 GAIVHQKTASVLCLTTVKNEDKLEFSRILEAIKANFNDKYDEYRKKWGGGIMGSKSQAKT 208
           GAIVHQKTASVLCLTTVKNEDKLEFSRILEAIKANFNDKYDEYRKKWGGGIMGSKSQAKT
Sbjct: 182 GAIVHQKTASVLCLTTVKNEDKLEFSRILEAIKANFNDKYDEYRKKWGGGIMGSKSQAKT 241

[Close]

BLAST of Cp4.1LG04g06120 vs. ExPASy TrEMBL
Match: A0A6J1EL96 (60S ribosomal protein L7a OS=Cucurbita moschata OX=3662 GN=LOC111435676 PE=3 SV=1)

HSP 1 Score: 365 bits (936), Expect = 6.89e-126
Identity = 203/256 (79.30%), Postives = 204/256 (79.69%), Query Frame = 0


Query: 3   APKKAVGKALAKKKAEKVVNPLFEKRPKQFGIGGALPPKRDLTR---------------- 62
           APKKAVGKALAKKK EKVVNPLFEKRPKQFGIGGALPPKRDLTR                
Sbjct: 2   APKKAVGKALAKKKPEKVVNPLFEKRPKQFGIGGALPPKRDLTRFVKWPKAVQIQRKKRI 61

Query: 63  ----------------------------------PEDKAQKRERLIKRAQEEAEGKPHDA 122
                                             PEDKAQKRERL+KRAQEEAEGK HDA
Sbjct: 62  LKQRLKVPPALNQFTKTLDKNLATNLFKMLLKYRPEDKAQKRERLLKRAQEEAEGKSHDA 121

Query: 123 KKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKARL 182
           KKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKARL
Sbjct: 122 KKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKARL 181

Query: 183 GAIVHQKTASVLCLTTVKNEDKLEFSRILEAIKANFNDKYDEYRKKWGGGIMGSKSQAKT 208
           GAIVHQKTASVLCLTTVKNEDKLEFSRILEAIKANFNDKYDEYRKKWGGGIMGSKSQAKT
Sbjct: 182 GAIVHQKTASVLCLTTVKNEDKLEFSRILEAIKANFNDKYDEYRKKWGGGIMGSKSQAKT 241

[Close]

BLAST of Cp4.1LG04g06120 vs. TAIR 10
Match: AT2G47610.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 331.6 bits (849), Expect = 4.4e-91
Identity = 179/256 (69.92%), Postives = 195/256 (76.17%), Query Frame = 0


Query: 3   APKKAVGKALAKKKAEKVVNPLFEKRPKQFGIGGALPPKRDLT----------------- 62
           APKK V  A  KK AEKV NPLFE+RPKQFGIGGALPPK+DL+                 
Sbjct: 2   APKKGVKVAAKKKTAEKVSNPLFERRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQKRI 61

Query: 63  ---------------------------------RPEDKAQKRERLIKRAQEEAEGKPHDA 122
                                            RPEDKA K+ERL+K+AQ EAEGKP ++
Sbjct: 62  LKQRLKVPPALNQFTKTLDKNLATSLFKVLLKYRPEDKAAKKERLVKKAQAEAEGKPSES 121

Query: 123 KKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKARL 182
           KKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKME+PYCIVKGK+RL
Sbjct: 122 KKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKSRL 181

Query: 183 GAIVHQKTASVLCLTTVKNEDKLEFSRILEAIKANFNDKYDEYRKKWGGGIMGSKSQAKT 209
           GA+VHQKTAS LCLTTVKNEDKLEFS+ILEAIKANFNDKY+EYRKKWGGGIMGSKSQAKT
Sbjct: 182 GAVVHQKTASCLCLTTVKNEDKLEFSKILEAIKANFNDKYEEYRKKWGGGIMGSKSQAKT 241

[Close]

BLAST of Cp4.1LG04g06120 vs. TAIR 10
Match: AT3G62870.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 327.4 bits (838), Expect = 8.3e-90
Identity = 177/256 (69.14%), Postives = 195/256 (76.17%), Query Frame = 0


Query: 3   APKKAVGKALAKKKAEKVVNPLFEKRPKQFGIGGALPPKRDLT----------------- 62
           APKK V K  +KKK EKV NPLFE+RPKQFGIGGALPPK+DL+                 
Sbjct: 2   APKKGV-KVASKKKPEKVTNPLFERRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQKRI 61

Query: 63  ---------------------------------RPEDKAQKRERLIKRAQEEAEGKPHDA 122
                                            RPEDKA K+ERL+ +AQ EAEGKP ++
Sbjct: 62  LKQRLKVPPALNQFTKTLDKNLATSLFKILLKYRPEDKAAKKERLLNKAQAEAEGKPAES 121

Query: 123 KKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKARL 182
           KKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKME+PYCIVKGK+RL
Sbjct: 122 KKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKSRL 181

Query: 183 GAIVHQKTASVLCLTTVKNEDKLEFSRILEAIKANFNDKYDEYRKKWGGGIMGSKSQAKT 209
           GA+VHQKTA+ LCLTTVKNEDKLEFS+ILEAIKANFNDKY+EYRKKWGGGIMGSKSQAKT
Sbjct: 182 GAVVHQKTAAALCLTTVKNEDKLEFSKILEAIKANFNDKYEEYRKKWGGGIMGSKSQAKT 241

[Close]

BLAST of Cp4.1LG04g06120 vs. TAIR 10
Match: AT4G22380.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 43.9 bits (102), Expect = 1.8e-04
Identity = 22/79 (27.85%), Postives = 37/79 (46.84%), Query Frame = 0


Query: 78  VKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKARLGAIVH 137
           +K G N  T  + +  ++ VV+A D +P+E+++ LP L     +PY  V  K  LG    
Sbjct: 35  LKKGANEATKTLNRGISEFVVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACG 94

Query: 138 QKTASVLCLTTVKNEDKLE 157
                + C  T     +L+
Sbjct: 95  VTRPVIACSVTSNEASQLK 113

[Close]

BLAST of Cp4.1LG04g06120 vs. TAIR 10
Match: AT4G12600.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 43.9 bits (102), Expect = 1.8e-04
Identity = 21/79 (26.58%), Postives = 37/79 (46.84%), Query Frame = 0


Query: 78  VKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKARLGAIVH 137
           +K G N  T  + +  ++ +V+A D +P+E+++ LP L     +PY  V  K  LG    
Sbjct: 35  LKKGANEATKTLNRGISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACD 94

Query: 138 QKTASVLCLTTVKNEDKLE 157
                + C  T     +L+
Sbjct: 95  VTRPVIACSVTSNEASQLK 113

[Close]

BLAST of Cp4.1LG04g06120 vs. TAIR 10
Match: AT5G20160.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 43.9 bits (102), Expect = 1.8e-04
Identity = 22/79 (27.85%), Postives = 37/79 (46.84%), Query Frame = 0


Query: 78  VKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKARLGAIVH 137
           +K G N  T  + +  ++ VV+A D +P+E+++ LP L     +PY  V  K  LG    
Sbjct: 35  LKKGANEATKTLNRGISEFVVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACG 94

Query: 138 QKTASVLCLTTVKNEDKLE 157
                + C  T     +L+
Sbjct: 95  VTRPVIACSVTSNEASQLK 113

The following BLAST results are available for this feature:

BLAST of Cp4.1LG04g06120 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P49692	6.2e-90	69.92	60S ribosomal protein L7a-1 OS=Arabidopsis thaliana OX=3702 GN=RPL7AA PE=2 SV=2	[more]
Q9LZH9	1.2e-88	69.14	60S ribosomal protein L7a-2 OS=Arabidopsis thaliana OX=3702 GN=RPL7AB PE=1 SV=1	[more]
P35685	2.4e-86	69.38	60S ribosomal protein L7a-1 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL7A-1 ...	[more]
P0DKK7	2.4e-86	69.38	60S ribosomal protein L7a-2 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL7A-2 ...	[more]
Q2TBQ5	3.3e-51	45.59	60S ribosomal protein L7a OS=Bos taurus OX=9913 GN=RPL7A PE=2 SV=3	[more]

BLAST of Cp4.1LG04g06120 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022928506.1	7.39e-128	80.47	60S ribosomal protein L7a-1 [Cucurbita moschata] >XP_022989710.1 60S ribosomal p...	[more]
XP_022983551.1	1.00e-125	79.30	60S ribosomal protein L7a-2-like [Cucurbita maxima]	[more]
XP_022928907.1	1.42e-125	79.30	60S ribosomal protein L7a-2 isoform X2 [Cucurbita moschata] >XP_022970186.1 60S ...	[more]
XP_022934368.1	1.42e-125	79.30	60S ribosomal protein L7a-2 [Cucurbita moschata] >XP_023527406.1 60S ribosomal p...	[more]
KAG6579663.1	4.08e-125	78.91	60S ribosomal protein L7a-2, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of Cp4.1LG04g06120 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JN50	3.58e-128	80.47	60S ribosomal protein L7a OS=Cucurbita maxima OX=3661 GN=LOC111486710 PE=3 SV=1	[more]
A0A6J1EKG8	3.58e-128	80.47	60S ribosomal protein L7a OS=Cucurbita moschata OX=3662 GN=LOC111435292 PE=3 SV=...	[more]
A0A6J1J2M5	4.85e-126	79.30	60S ribosomal protein L7a OS=Cucurbita maxima OX=3661 GN=LOC111482120 PE=3 SV=1	[more]
A0A6J1HZX8	6.89e-126	79.30	60S ribosomal protein L7a OS=Cucurbita maxima OX=3661 GN=LOC111469156 PE=3 SV=1	[more]
A0A6J1EL96	6.89e-126	79.30	60S ribosomal protein L7a OS=Cucurbita moschata OX=3662 GN=LOC111435676 PE=3 SV=...	[more]

BLAST of Cp4.1LG04g06120 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G47610.1	4.4e-91	69.92	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT3G62870.1	8.3e-90	69.14	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT4G22380.1	1.8e-04	27.85	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT4G12600.1	1.8e-04	26.58	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT5G20160.1	1.8e-04	27.85	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001921	Ribosomal protein L7A/L8	PRINTS	PR00882	RIBOSOMALL7A	coord: 40..53 score: 36.36 coord: 74..94 score: 62.77 coord: 135..159 score: 48.36 coord: 167..187 score: 68.4
IPR018492	Ribosomal protein L7Ae/L8/Nhp2 family	PRINTS	PR00881	L7ARS6FAMILY	coord: 97..110 score: 71.43 coord: 78..92 score: 45.76 coord: 113..123 score: 64.46 coord: 123..137 score: 56.36
IPR004038	Ribosomal protein L7Ae/L30e/S12e/Gadd45	PFAM	PF01248	Ribosomal_L7Ae	coord: 65..155 e-value: 9.7E-26 score: 89.4
IPR029064	50S ribosomal protein L30e-like	GENE3D	3.30.1330.30		coord: 42..202 e-value: 1.5E-63 score: 215.5
IPR029064	50S ribosomal protein L30e-like	SUPERFAMILY	55315	L30e-like	coord: 43..179
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 30..55
None	No IPR available	PANTHER	PTHR23105:SF168	BNAA03G47020D PROTEIN	coord: 49..206 coord: 2..46
None	No IPR available	PANTHER	PTHR23105	RIBOSOMAL PROTEIN L7AE FAMILY MEMBER	coord: 2..46
None	No IPR available	PANTHER	PTHR23105	RIBOSOMAL PROTEIN L7AE FAMILY MEMBER	coord: 49..206
IPR004037	Ribosomal protein L7Ae conserved site	PROSITE	PS01082	RIBOSOMAL_L7AE	coord: 116..133

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG04g06120.1	Cp4.1LG04g06120.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000470	maturation of LSU-rRNA
biological_process	GO:0042254	ribosome biogenesis
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:1990904	ribonucleoprotein complex
molecular_function	GO:0003723	RNA binding