Cp4.1LG03g02700 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG03g02700
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	protein RETICULATA, chloroplastic-like
Location	Cp4.1LG03: 465756 .. 471111 (-)
RNA-Seq Expression	Cp4.1LG03g02700
Synteny	Cp4.1LG03g02700

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTGTGGTTTTCTCTGGTGAAGTTGTAAATTTGTCAACAATTCGTAGTTGGATTCTCTACATGGCGGTATTTGGAACATCCTGTTCTGTGGATTTCGGGAATGAAGTAATTTTGGGGAAGATGTGGAGTCGGGGGGTGGCTTTTGGCTGCAGAACCTTTAGAAATGTGGTGAAGGAGGTTGCTTATCCAGCATCGGCTAGAAAAAGTATTGGTAGATGCGTCACTATAAAGAGGAAAAATAAGTTATCGGTAATGATGGATTTTTCTCAGTCGCATTTGGACTCAGACGCTCCTGCAGCTGCTATTCCTGTTTCGAAGGAAGAAGATGAGACCATTAAGGGAAAGGATTTTAGAATTTCGGAGATATCAAAAGTGGACAATGATAACAGTGGTAATGGAAATTATAATAACGGTAAAGGAGGTTGGGGCGGCGGTGGCGGTGGTAGTGGCGATGACAACAAGGGAGACAAAGAAGAAGAGGAATTTGGTCCAATTATGAAATTTGATGAGGTGATGAAAGAGGTGGAATCAAGAGGGGTAAGTCTTCCTTCAGATATGTTGGAGGCAGCGAAGGGCGAGGGAATTCGCAAGCTGCTGCTGCTTAGATATTTAGAGATGCAGGTAAGAACTTATCTTCTCTAACATCTTTTGCCATTTCTGCTAAGCAATTTCCTTGTTGGTTATTGAAGGGTTTAGGTTGGCCTCTTGGCTTTTTGATGAAGTCTTGTGCTATGCTTCGAAACCGGATGCTGGCTGATCCATCATTTTTCTTCAAAGTTGGCGTCGAGGTCCATTACCTCATCCTCATACCATATTTCACTATTTATAGTTTTGACATAACTCCGGATGTCATACACATTTTTTGAAATTACTGATTCAATATTTGCAGTTAGTTATTGATTCTTGCTGCGCCACTCTTGCGGAAGTTCAAAAGAGAGGCAAAGATTTCTGGACAGAATTTGAGCTTTATCTTGCTGATATTTTGGTGGGCGTGGGTGTTAACTTTGCTTTGGTTGCCCTTTTGGCACCTTATGCTCGTTTTGGGCAACCATCTGTGTCAAAAGGTTTCCTTGGACGCACTCTTCATGCTTGTGAAGCACTACCAAGCAGGTTTAGAAGCTGAGTTGTGTTGTTTGTAAGTTATCATCATTCCTTATGAAACCAATATGTTTAGAAGCTGTCTTCTTCATGTGTAGTGTTTTTGAAGCTGAACGACCAGGATGTAGATTTTCTGTACAACAAAGAATTCTTACATTTTTCTATAAGGTGAGGGTTATAAGATACTTTTACCCAAACTTATTTTCATCTCTTAGTGTGAGATCCCACATCGGTTGGAGAGGAGAATGAAGCATTCCTTGTAAGAGTGTGGAAACCTCTCCTTTGCGAACGTGAGAGGCTGACAACGATATGTAACAGGTCAAAGCGGACAATATCTGCTAGCTGTGGGCTAAAACTCTTATACTTGAGAACTTATTTTTATGCTTATTGCTTTAGGGACTCATGTATGGTGCAATAGGATTTGGATGTGGTATAATCGGCCAAGGCCTTGCAAATTTAATAATGATCTCAAAAAGGTTATATCTATTCCACGAATTTTGCTCTCGCACATTTCGTTTACAACGTTGGTTGTTGTTGTTTCTTTTTTTATGTGATCCTTACCCATTTCTTTTGGCATACATCAGGAGCATAAAGAAATCTGAAGATGAAGTACCAGTTCCACCTCTCTTAAAGAGTGCGGCTCTTTGGGGTACTTCTCGCTTGTTTATATTATTTCAATTTTATTTGATCGATTTTCCCTGGGTCATGTGAATGTTGCTACTTTGCTTATTGCTTTACTCTCACTAGATAATGGCTGTGTATGTCTACAATGAAGTATATGTTGCATGTTTATTATTTGTTTTTCTTGCATTCCAGACATTTGTGATGCTTGTGCTTGCTGCTTCGTTCAGACAGTAGAACTTATCTGATATTCTGATATTCTGATTTGATCAAATGCACTATGCTTGGGTTGATAAGTTTACCACCACACTCGATCAACTTGATCAGGATTTACTTTGTAATTTGTTCATCAACTTCCCAATACAGATAGATTCTATTTACGTTGAGATATCAGTTTGATATGTTGTTGGATTCATGAGCTTGTGACTGATTAAATGGTTGCCTTATTTCACTAGATATACTTACTAAACAGAGAAGTTACTACTCTCTAGCCTGTGGCATTGTGTGATACCTTGAACAAAAAAATGATCATTCGAAGGAAAAGAAGGAAAAGCCTAAAGTGGGCTGTTACACTCTTGCAGTGTTATTTGATTTTCTTTTGCCTGCTAGTTATCCTGTTAAGAACCACTCTATAATGATCAGGCCAATTGCCTTGGGAGTTTTGAGATTGTTTTTCATTTGGAGTTCTCTTCTCTATAACTATGTTTTCTTGTACCCGAACTCTTCATTATTGGTATTTTTTGTTTCTGTTTCTTCTCACCAAAATATGTTTTCTTTGTCACGGCCAAACTTGCAGGAGTTTTTCTTGCAGTATCTTCAAATACGCGTTACCAGATCATCAATGGACTGGAACGCGTAGTGGAATCATCAGCATTAGCAAAGTATATTCCAACAGTTGCTTTGGCTTTCACGGTAGGTATTCGATTTGGCAATAACGTGTACGCTGGAATGCAATTTATCGACTGGGCTAGATGGAGTGGAGTCCAGTAACACCATCTATACAACTTTGAGATATCATTTCTATCTCCTAGGACTCCACAAAAGTGCTCATACCAAAACAAAAGGTCATCATCCTCTTAACTTAAGCTTCGACATTTACTGTAATATCTAGACAAGGAAAACGGATCCTTTTGTTGCAATAATAGATTGAAAAGATTCATTTTTGTTACCTGTAAAAGTAATAGGAACCCTTTTATGATATAAAGAAGATATGCCTCATAATTCAATGGAGTTCTGTTCGCCAGAAAAGCACAGTAACCTTGCAGGAGAAGTGATAATCTGATTGCGAAATCCAGCATTGTTGGAAAGGAAGAGGTAATCTGCAACCCGAGGCCTAGAAAAGGAGACTTTTTTTTTTTTTTTTTTTTTTTATTTTGATTACTCTGATCTAAACCTCAGGATGCAGATTACCTGATCCATACCCAATAAAAATTATAAAATCAAAGCTCACTCTGCAGAAAAGAAGAAAAAATAGCAGAGAGTAGAGAGTTTTTTGACTGAGGAAGAAGCTTTGGATTTAGATGGAGCTGAAGTTTATGAGGTAAATCCATCAGTATTTATAATGGGTTTCAAAATTCATTTTTTTTTTAATTTCTTTTACAAGGAAAAGGTGAATAAAACAAAGGAGAAACACATGATAAGGTGCTCTACTAGAATCATGAGTTGGCATCTGTTCTTCGTTTGACCACTTTTTTTTATTAAAAAAAAAAAAAGATCCAGTAGGATAAGAGATCTTACCCTATTTATCAGCAAAAGTTTACCCTACATGTTTCTTCCCAGTTTTTACCCAGTTTTAAGTTAATGTTATCTTATTCATCTTCCAGTCAACTACAATTCCTCATGTGATTATGATTTGTATACATAGCTCATCTTATAATTTTCCAGTTTAATTCCAATACAAATAAATTTTGTATCCAAAAAAGTTACCTAATTGATTGGGTTGCATAGAGATTAAAGTCGATTTGTGGTTCTTAATACTCCACATCAAAGATCAGAGATTCCCCATATCTCCACTGGAAATCTAGGCCCACTATCCTTTAAAGGGAGAAAAAGAAAAGCCCAAAATACTTTTAGAAAAGAAAGAAAGTGAGCCCACTAGCCCAATAAACTTCGAAATCTCAATCATTCATTCATACATACATACATACATCCCAAACAGCAAATTAGGGTTAAATTTCCAACAACGATTATTCTCTAAAATGCGTAAGAACACGCCACCTACACCAGACATAGAGAACCCTCGTCCTGTTCTCTCCTTTGAAATTGTAACATAATGGCAAATAATGGCGTTTTGAGGTTTGAATTCTCATCTATCTTTGTTTGATCTGATAGGAATTGGGAGGTATCCCATTTGCTTATGCTCTTCTCTACTAGTTGTTACTGATCTAAACCCTATATATATATATATATATATATATATATATTTTAATACAGCTTCACTGCCAAATAATATGGAACCTCTTGTCTTCCTAACATCATAACTTCAAACCCCATAATCAATTTCACCCTACAAAGTCATGTAACAGCTGCCCTCCAACAACATCTCTACCAAAATGTCCTCCCATTACATACCCATCACTATTGCCTTGAATTCCCAGCCCGAAACGTCGAGTCGCCGCAACGGGGAACCCAACAGGAAAGGGTTCAGAAAAGCCACCACCAATGCCGTTGTTGTTGTTCTGGTGAAGACCAAGAGTTAGCGAAACTCCATTGTTGTTCCCCCCCATATTTGCATTTGAGCCTACATGGGGATGGCTCGACACGTTGTAAGACACGTTCAAGGGCTCGTCGTGATTTCCCATTAGCACGTCGTGTGGTTTGTTTCGGGTACGTTTGGTAGGAGTATCTTGAATTTCTTGAGCGGATTTAGAGGGGTTATCGATGGCGAGCAAGTTGGTTGGATGGTGATCGTTTAGCCTGTTGGGGTCGCGATCATCTCTGTGCAAATTCTTCTGCGTTTGTTTGGTTTCAAGCATGTATATTTCTTCAACCATTGGCTTCCAAAGCCTAACTCTTGCATTAATGAACCAGTTAGATACCTGTCTCAGAGAAGAGAGTAGATTTATTGTGTTTTAGAGCAAAATAAATAAATAAATAAATAACGTGAAGTTTGAATTGACATTAGAAAGCGGACCTGACTACGAGACAGACCAGTCTGTTTTGCCAACATAAGCTTGTCTGTATCAGAAGGATAACTGTCCAAACAAAAAACCAAAACAATACCAATCAACACACTAAAAACCCAACACCACCATGCTTGGGGTTACAGTGAAGTACTTACGGATGCAAAAAATGTTCGAACAACCAAGCACGAAGAACGGTGACTGCTCGTTCGGGAAGCCCCCGTTGCGGTCGCCAAACAGGCTGATGGTCGAGAAATCCCGGGTTCTGACCGGATCTTTGACCGTAGTCACCACGAGTCTTCTTATTGAATTGAAGTTGGTCAAGAATTGCATTTTTCAAGCACTTGAAATGCTTGTACATCACTTTAATAGCCTGGTTTGCATAGGGCGCTGCATTCCCAAGGCCAGAGATGTACTCAAAAGATGTCATTACTTCCTGAACTTGTTGATAGTACTGCTTATATTTCCTGTAAATCTACACAATAACCCCAAAACAAATGCTAAGCTAATACTAA

mRNA sequence

CTTGTGGTTTTCTCTGGTGAAGTTGTAAATTTGTCAACAATTCGTAGTTGGATTCTCTACATGGCGGTATTTGGAACATCCTGTTCTGTGGATTTCGGGAATGAAGTAATTTTGGGGAAGATGTGGAGTCGGGGGGTGGCTTTTGGCTGCAGAACCTTTAGAAATGTGGTGAAGGAGGTTGCTTATCCAGCATCGGCTAGAAAAAGTATTGGTAGATGCGTCACTATAAAGAGGAAAAATAAGTTATCGGTAATGATGGATTTTTCTCAGTCGCATTTGGACTCAGACGCTCCTGCAGCTGCTATTCCTGTTTCGAAGGAAGAAGATGAGACCATTAAGGGAAAGGATTTTAGAATTTCGGAGATATCAAAAGTGGACAATGATAACAGTGGTAATGGAAATTATAATAACGGTAAAGGAGGTTGGGGCGGCGGTGGCGGTGGTAGTGGCGATGACAACAAGGGAGACAAAGAAGAAGAGGAATTTGGTCCAATTATGAAATTTGATGAGGTGATGAAAGAGGTGGAATCAAGAGGGGTAAGTCTTCCTTCAGATATGTTGGAGGCAGCGAAGGGCGAGGGAATTCGCAAGCTGCTGCTGCTTAGATATTTAGAGATGCAGGGTTTAGGTTGGCCTCTTGGCTTTTTGATGAAGTCTTGTGCTATGCTTCGAAACCGGATGCTGGCTGATCCATCATTTTTCTTCAAAGTTGGCGTCGAGTTAGTTATTGATTCTTGCTGCGCCACTCTTGCGGAAGTTCAAAAGAGAGGCAAAGATTTCTGGACAGAATTTGAGCTTTATCTTGCTGATATTTTGGTGGGCGTGGGTGTTAACTTTGCTTTGGTTGCCCTTTTGGCACCTTATGCTCGTTTTGGGCAACCATCTGTGTCAAAAGGTTTCCTTGGACGCACTCTTCATGCTTGTGAAGCACTACCAAGCAGGAGCATAAAGAAATCTGAAGATGAAGTACCAGTTCCACCTCTCTTAAAGAGTGCGGCTCTTTGGGGAGTTTTTCTTGCAGTATCTTCAAATACGCGTTACCAGATCATCAATGGACTGGAACGCGTAGTGGAATCATCAGCATTAGCAAAGTATATTCCAACAGTTGCTTTGGCTTTCACGGTAGGTATTCGATTTGGCAATAACGTGTACGCTGGAATGCAATTTATCGACTGGGCTAGATGGAGTGGAGTCCAGTAACACCATCTATACAACTTTGAGATATCATTTCTATCTCCTAGGACTCCACAAAAGTGCTCATACCAAAACAAAAGTAATAGGAACCCTTTTATGATATAAAGAAGATATGCCTCATAATTCAATGGAGTTCTGTTCGCCAGAAAAGCACAGTAACCTTGCAGGAGAAGTGATAATCTGATTGCGAAATCCAGCATTGTTGGAAAGGAAGAGAAAAGAAGAAAAAATAGCAGAGAGTAGAGAGTTTTTTGACTGAGGAAGAAGCTTTGGATTTAGATGGAGCTGAAGTTTATGAGGTAAATCCATCAGTATTTATAATGGGTTTCAAAATTCATTTTTTTTTTAATTTCTTTTACAAGGAAAAGGTGAATAAAACAAAGGAGAAACACATGATAAGGTGCTCTACTAGAATCATGAGTTGGCATCTGTTCTTCGTTTGACCACTTTTTTTTATTAAAAAAAAAAAAAGATCCAGTAGGATAAGAGATCTTACCCTATTTATCAGCAAAAGTTTACCCTACATGTTTCTTCCCAGTTTTTACCCAGTTTTAAGTTAATGTTATCTTATTCATCTTCCAGTCAACTACAATTCCTCATGTGATTATGATTTGTATACATAGCTCATCTTATAATTTTCCAGTTTAATTCCAATACAAATAAATTTTGTATCCAAAAAAGTTACCTAATTGATTGGGTTGCATAGAGATTAAAGTCGATTTGTGGTTCTTAATACTCCACATCAAAGATCAGAGATTCCCCATATCTCCACTGGAAATCTAGGCCCACTATCCTTTAAAGGGAGAAAAAGAAAAGCCCAAAATACTTTTAGAAAAGAAAGAAAGTGAGCCCACTAGCCCAATAAACTTCGAAATCTCAATCATTCATTCATACATACATACATACATCCCAAACAGCAAATTAGGGTTAAATTTCCAACAACGATTATTCTCTAAAATGCGTAAGAACACGCCACCTACACCAGACATAGAGAACCCTCGTCCTGTTCTCTCCTTTGAAATTGTAACATAATGGCAAATAATGGCGTTTTGAGGTTTGAATTCTCATCTATCTTTGTTTGATCTGATAGGAATTGGGAGGTATCCCATTTGCTTATGCTCTTCTCTACTAGTTGTTACTGATCTAAACCCTATATATATATATATATATATATATATATATTTTAATACAGCTTCACTGCCAAATAATATGGAACCTCTTGTCTTCCTAACATCATAACTTCAAACCCCATAATCAATTTCACCCTACAAAGTCATGTAACAGCTGCCCTCCAACAACATCTCTACCAAAATGTCCTCCCATTACATACCCATCACTATTGCCTTGAATTCCCAGCCCGAAACGTCGAGTCGCCGCAACGGGGAACCCAACAGGAAAGGGTTCAGAAAAGCCACCACCAATGCCGTTGTTGTTGTTCTGGTGAAGACCAAGAGTTAGCGAAACTCCATTGTTGTTCCCCCCCATATTTGCATTTGAGCCTACATGGGGATGGCTCGACACGTTGTAAGACACGTTCAAGGGCTCGTCGTGATTTCCCATTAGCACGTCGTGTGGTTTGTTTCGGGTACGTTTGGTAGGAGTATCTTGAATTTCTTGAGCGGATTTAGAGGGGTTATCGATGGCGAGCAAGTTGGTTGGATGGTGATCGTTTAGCCTGTTGGGGTCGCGATCATCTCTGTGCAAATTCTTCTGCGTTTGTTTGGTTTCAAGCATGTATATTTCTTCAACCATTGGCTTCCAAAGCCTAACTCTTGCATTAATGAACCAGTTAGATACCTGTCTCAGAGAAGAGAGTAGATTTATTGTGTTTTAGAGCAAAATAAATAAATAAATAAATAACGTGAAGTTTGAATTGACATTAGAAAGCGGACCTGACTACGAGACAGACCAGTCTGTTTTGCCAACATAAGCTTGTCTGTATCAGAAGGATAACTGTCCAAACAAAAAACCAAAACAATACCAATCAACACACTAAAAACCCAACACCACCATGCTTGGGGTTACAGTGAAGTACTTACGGATGCAAAAAATGTTCGAACAACCAAGCACGAAGAACGGTGACTGCTCGTTCGGGAAGCCCCCGTTGCGGTCGCCAAACAGGCTGATGGTCGAGAAATCCCGGGTTCTGACCGGATCTTTGACCGTAGTCACCACGAGTCTTCTTATTGAATTGAAGTTGGTCAAGAATTGCATTTTTCAAGCACTTGAAATGCTTGTACATCACTTTAATAGCCTGGTTTGCATAGGGCGCTGCATTCCCAAGGCCAGAGATGTACTCAAAAGATGTCATTACTTCCTGAACTTGTTGATAGTACTGCTTATATTTCCTGTAAATCTACACAATAACCCCAAAACAAATGCTAAGCTAATACTAA

Coding sequence (CDS)

ATGGCGGTATTTGGAACATCCTGTTCTGTGGATTTCGGGAATGAAGTAATTTTGGGGAAGATGTGGAGTCGGGGGGTGGCTTTTGGCTGCAGAACCTTTAGAAATGTGGTGAAGGAGGTTGCTTATCCAGCATCGGCTAGAAAAAGTATTGGTAGATGCGTCACTATAAAGAGGAAAAATAAGTTATCGGTAATGATGGATTTTTCTCAGTCGCATTTGGACTCAGACGCTCCTGCAGCTGCTATTCCTGTTTCGAAGGAAGAAGATGAGACCATTAAGGGAAAGGATTTTAGAATTTCGGAGATATCAAAAGTGGACAATGATAACAGTGGTAATGGAAATTATAATAACGGTAAAGGAGGTTGGGGCGGCGGTGGCGGTGGTAGTGGCGATGACAACAAGGGAGACAAAGAAGAAGAGGAATTTGGTCCAATTATGAAATTTGATGAGGTGATGAAAGAGGTGGAATCAAGAGGGGTAAGTCTTCCTTCAGATATGTTGGAGGCAGCGAAGGGCGAGGGAATTCGCAAGCTGCTGCTGCTTAGATATTTAGAGATGCAGGGTTTAGGTTGGCCTCTTGGCTTTTTGATGAAGTCTTGTGCTATGCTTCGAAACCGGATGCTGGCTGATCCATCATTTTTCTTCAAAGTTGGCGTCGAGTTAGTTATTGATTCTTGCTGCGCCACTCTTGCGGAAGTTCAAAAGAGAGGCAAAGATTTCTGGACAGAATTTGAGCTTTATCTTGCTGATATTTTGGTGGGCGTGGGTGTTAACTTTGCTTTGGTTGCCCTTTTGGCACCTTATGCTCGTTTTGGGCAACCATCTGTGTCAAAAGGTTTCCTTGGACGCACTCTTCATGCTTGTGAAGCACTACCAAGCAGGAGCATAAAGAAATCTGAAGATGAAGTACCAGTTCCACCTCTCTTAAAGAGTGCGGCTCTTTGGGGAGTTTTTCTTGCAGTATCTTCAAATACGCGTTACCAGATCATCAATGGACTGGAACGCGTAGTGGAATCATCAGCATTAGCAAAGTATATTCCAACAGTTGCTTTGGCTTTCACGGTAGGTATTCGATTTGGCAATAACGTGTACGCTGGAATGCAATTTATCGACTGGGCTAGATGGAGTGGAGTCCAGTAA

Protein sequence

MAVFGTSCSVDFGNEVILGKMWSRGVAFGCRTFRNVVKEVAYPASARKSIGRCVTIKRKNKLSVMMDFSQSHLDSDAPAAAIPVSKEEDETIKGKDFRISEISKVDNDNSGNGNYNNGKGGWGGGGGGSGDDNKGDKEEEEFGPIMKFDEVMKEVESRGVSLPSDMLEAAKGEGIRKLLLLRYLEMQGLGWPLGFLMKSCAMLRNRMLADPSFFFKVGVELVIDSCCATLAEVQKRGKDFWTEFELYLADILVGVGVNFALVALLAPYARFGQPSVSKGFLGRTLHACEALPSRSIKKSEDEVPVPPLLKSAALWGVFLAVSSNTRYQIINGLERVVESSALAKYIPTVALAFTVGIRFGNNVYAGMQFIDWARWSGVQ

Homology

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BLAST of Cp4.1LG03g02700 vs. ExPASy Swiss-Prot
Match: B9DFK5 (Protein RETICULATA, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RE PE=1 SV=1)

HSP 1 Score: 359.4 bits (921), Expect = 5.1e-98
Identity = 220/434 (50.69%), Postives = 267/434 (61.52%), Query Frame = 0


Query: 5   GTSCSVDFGNEV-ILGKMWSRGVAFGCRTFRNVVKEVAYPA-SARKSIGRCVTIKRKNKL 64
           G + ++ F + V +  ++ S G+      FR++ K +  P    R   GR    +R    
Sbjct: 3   GCAMNLQFSSVVKVRNEISSFGICNRDFVFRDLAKAMKVPVLRIRGGSGR----QRSRLF 62

Query: 65  SVMMDFSQSHLDSDAPAAAIPVSKEEDETIKGKD----FRISEISKVDND-NSGNG-NYN 124
            V M  S     S   AA   +  E D +I GKD        ++  +D D N G+G N +
Sbjct: 63  VVNMSQSPIEPQSGGFAATEQIKGEGDNSILGKDNVRNLGTDQLENLDIDGNVGDGFNGS 122

Query: 125 NGKGGWGGGG-GGSGDDNKGDKEEEEFGPIMKFDEVMKEVESRGVSLPSDMLEAAKGEGI 184
           +G GG GGGG GG GD    D EE+EFGPI+KF+EVMKE E+RG +LPSDMLEAAK  GI
Sbjct: 123 DGNGGGGGGGNGGEGDGEGEDYEEKEFGPILKFEEVMKETEARGATLPSDMLEAAKNYGI 182

Query: 185 RKLLLLRYLEMQGLGWPLGFLMKSCAMLRNRMLADPSFFFKVGVELVIDSCCATLAEVQK 244
           RK+LLLRYL++Q     LGF ++S AMLRNRMLADPSF FK+G E+VIDSCCAT+AEVQK
Sbjct: 183 RKVLLLRYLDLQSSAGLLGFAIRSWAMLRNRMLADPSFLFKIGAEIVIDSCCATVAEVQK 242

Query: 245 RGKDFWTEFELYLADILVGVGVNFALVALLAPYARFGQPSVSKGFLGRTLHACEALPS-- 304
           RGKDFW EFELY+AD+LVG  VN ALV +LAPY RFGQPS S GFLGR + A  ALPS  
Sbjct: 243 RGKDFWAEFELYVADLLVGTVVNIALVGMLAPYVRFGQPSASPGFLGRMVFAYNALPSSV 302

Query: 305 ------------------------------------------------RSIKKSEDEVPV 364
                                                           R+I KSE+ +PV
Sbjct: 303 FEAERPGCRFSAQQRLATYFYKGIMYGAVGFGCGIVGQGIANLIMTAKRNINKSEENIPV 362

Query: 365 PPLLKSAALWGVFLAVSSNTRYQIINGLERVVESSALAKYIPTVALAFTVGIRFGNNVYA 380
           PPL+KSAALWGVFL+VSSNTRYQIINGLERVVE+S  AK  P  A+AFTVG+R  NN+Y 
Sbjct: 363 PPLIKSAALWGVFLSVSSNTRYQIINGLERVVEASPFAKKFPPAAMAFTVGVRLANNIYG 422

[Close]

BLAST of Cp4.1LG03g02700 vs. ExPASy Swiss-Prot
Match: Q9FGP9 (Protein RETICULATA-RELATED 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RER1 PE=1 SV=1)

HSP 1 Score: 353.6 bits (906), Expect = 2.8e-96
Identity = 201/348 (57.76%), Postives = 235/348 (67.53%), Query Frame = 0


Query: 88  EDETIKGKDFRISEISKVD--NDNSGNGNYNNGKGGWGGGGGGSGDD--NKGDK-EEEEF 147
           +DET+   +  + +    D   +N G GN  NG GG GGGG G GDD  ++ DK EE+EF
Sbjct: 87  KDETLSDLEPELDDGDGGDENGNNDGGGNGGNGDGG-GGGGDGEGDDGEDEADKAEEKEF 146

Query: 148 GPIMKFDEVMKEVESRGVSLPSDMLEAAKGEGIRKLLLLRYLEMQGLGWPLGFLMKSCAM 207
           GPI+KF+EVMKE E RG++LP DMLEAAK  GIRKL LLRYL++QG  WPLGFLM+SCAM
Sbjct: 147 GPILKFEEVMKETERRGITLPEDMLEAAKSVGIRKLFLLRYLDLQGSVWPLGFLMRSCAM 206

Query: 208 LRNRMLADPSFFFKVGVELVIDSCCATLAEVQKRGKDFWTEFELYLADILVGVGVNFALV 267
           LRNRMLADPSF FKVG E+ IDSCCAT AEVQKRG+DFW+EFELY AD+LVG+ V+ ALV
Sbjct: 207 LRNRMLADPSFLFKVGTEVAIDSCCATFAEVQKRGEDFWSEFELYAADLLVGLVVDVALV 266

Query: 268 ALLAPYARFGQPSV-SKGFLGRTLHACEALPS---------------------------- 327
            LLAPYAR G+PSV S G       AC +LPS                            
Sbjct: 267 GLLAPYARIGKPSVASTGLFKDLKRACASLPSSVFEAERPGCKFSVNQRIATFFYKGLLY 326

Query: 328 ----------------------RSIKKSEDEVPVPPLLKSAALWGVFLAVSSNTRYQIIN 380
                                 RS+KKSE++VP+PPL +SAALWGVFL +SSN RYQIIN
Sbjct: 327 GSVGFGCGLIGQGIANLIMTAKRSVKKSEEDVPIPPLFESAALWGVFLGLSSNARYQIIN 386

[Close]

BLAST of Cp4.1LG03g02700 vs. ExPASy Swiss-Prot
Match: Q94CJ5 (Protein RETICULATA-RELATED 4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RER4 PE=2 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 6.1e-19
Identity = 97/336 (28.87%), Postives = 154/336 (45.83%), Query Frame = 0


Query: 102 ISKVDNDNSGN-GNYNNGKGGWGGGGGGSGDDNKGDKEEEEFGPIMKFDEVMKEVESRGV 161
           I+ V + +SGN G+ NNG G  GGGGGG G  N GD   +E     + +E M  ++  G+
Sbjct: 56  ITPVLSASSGNGGSDNNGGGLSGGGGGGDGGKNDGDGHGDEDRDRNR-NEAMLLLKESGI 115

Query: 162 ---SLPSDMLEAAKGEGIRKLLLLRYLEMQG---LGWPLGFLMKSCAMLRNRMLADPSFF 221
              SLP D+  A +   I   ++ R+LE+Q    + W + F        R R+LAD  F 
Sbjct: 116 ELESLPKDLAAAIEAGRIPGSVITRFLELQKSAVMRWLMQF-----GGFRERLLADDLFM 175

Query: 222 FKVGVELVIDSCCATLAEVQKRGKDFWTEFELYLADILVGVGVNFALVALLAPYARFGQP 281
            K+ +E  +     T AE ++R ++F+ E E+  AD+ + +  +F LV L AP      P
Sbjct: 176 AKLAMECGVGIFTKTAAEYERRRENFFNELEVVFADVAMAIIADFMLVYLPAPTVSLRPP 235

Query: 282 -SVSKGFLGRTLHAC-----------------------------------------EALP 341
            +++ G + +  H C                                          A+ 
Sbjct: 236 LALTAGGISKFFHNCPDNAFQVALSGTSYTLLQRLGAITRNGAKLFAVGTTSSLVGTAIT 295

Query: 342 SRSIK-------KSEDEVPVPPLLKSAALWGVFLAVSSNTRYQIINGL--ERVVESSALA 380
           +  IK        SE EV   P++ ++  +GV++AVSSN RYQI+ G+  +R++E     
Sbjct: 296 NAFIKARKAVDQNSEGEVETVPIVSTSVAYGVYMAVSSNLRYQIVAGVIEQRLLEPMLHQ 355

[Close]

BLAST of Cp4.1LG03g02700 vs. ExPASy Swiss-Prot
Match: Q9C9Z3 (Protein RETICULATA-RELATED 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RER2 PE=2 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 3.4e-09
Identity = 80/312 (25.64%), Postives = 115/312 (36.86%), Query Frame = 0


Query: 111 GNGNYNNGKGGWGGGGGGSGDDNKGDKEEEEFGPIMKFDEVMKEVESRGVSLPSDMLEAA 170
           G G+  N  GG G GGGG G     ++E   +GP+  F +                    
Sbjct: 64  GGGSIGNHGGGSGSGGGGGGYGGSEEEESSPWGPLGLFIQ-------------------- 123

Query: 171 KGEGIRKLLLLRYLEMQGLGWPLGFLMKSCAMLRNRMLADPSFFFKVGVELVIDSCCATL 230
                              GW            R+R+ AD  F FKV +E+++      L
Sbjct: 124 -------------------GW------------RSRVAADSQFPFKVLMEMLVGVSANVL 183

Query: 231 AEVQKRGKDFWTEFELYLADILVGVGVNFALVALLAPYA--------------------- 290
            ++  R      E +   + ++VG  +NF L+ LLAP A                     
Sbjct: 184 GDMASRPNFGLNELDFVFSTLVVGSILNFTLMYLLAPSAISHGSSNLLPGIFRSCPSSHM 243

Query: 291 ----------RFGQPSVSKGFLGRTLHACEALPSRSI-------KKSED---EVP--VPP 350
                     RFG   V KG +  T+     L   +I       +K  D   E P   PP
Sbjct: 244 FEQGNFTLMNRFG-TLVYKGMVFATVGLAAGLVGTAISNGLIMLRKKIDPSFETPNKPPP 303

Query: 351 LLKSAALWGVFLAVSSNTRYQIINGLERVVESSALAKYIPTVALAFTVGIRFGNNVYAGM 380
            L ++  W   + VS+N RYQ +NG E ++E S      P V     + +R  NNV  GM
Sbjct: 304 TLLNSLTWATHMGVSANVRYQTLNGAEFLLEKS----LPPLVFKTSVIALRVVNNVLGGM 319

[Close]

BLAST of Cp4.1LG03g02700 vs. ExPASy Swiss-Prot
Match: Q9C9Z2 (Protein RETICULATA-RELATED 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RER3 PE=1 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 2.9e-08
Identity = 82/329 (24.92%), Postives = 123/329 (37.39%), Query Frame = 0


Query: 96  DFRISEISKVDNDNSGNGNYNNGKGGWGGGGGGSGDDNKGDKEEEEFGPIMKFDEVMKEV 155
           +F    ++K      G G+  N  GG G GGGG G    G +  EE  P           
Sbjct: 49  NFSSPHLAKPCAGGGGGGSTGNNGGGSGSGGGGGGFGGSGGEASEESSP----------- 108

Query: 156 ESRGVSLPSDMLEAAKGEGIRKLLLLRYLEMQGLGW-PLGFLMKSCAMLRNRMLADPSFF 215
                                              W P+G  ++     R+R+ ADP F 
Sbjct: 109 -----------------------------------WGPIGLFIQG---WRSRVAADPQFP 168

Query: 216 FKVGVELVIDSCCATLAEVQKRGKDFWTEFELYLADILVGVGVNFALVALLAPYA----- 275
           FKV +E ++      L ++  R      E +   + ++VG  +NF L+ +LAP A     
Sbjct: 169 FKVLMEEIVGLSACVLGDMASRPNFGLNELDFVFSTLVVGSILNFVLMYMLAPTAATLGS 228

Query: 276 --------------------------RFGQPSVSKGFLGRTLHACEALPSRSI------- 335
                                     RFG   V KG +  ++     L   +I       
Sbjct: 229 SQTLPGIFRNCPSSHMFEQGSFTVMNRFG-TLVYKGMVFASVGLAAGLVGTAISNGLIML 288

Query: 336 KKSED---EVP--VPPLLKSAALWGVFLAVSSNTRYQIINGLERVVESSALAKYIPTVAL 380
           +K  D   E P   PP + ++  W   + VS+N RYQ +NG+E +     LAK +P +  
Sbjct: 289 RKKMDPSFETPNKPPPTVLNSLTWATHMGVSANARYQTLNGIEFL-----LAKVLPPLVF 322

[Close]

BLAST of Cp4.1LG03g02700 vs. NCBI nr
Match: XP_023527108.1 (protein RETICULATA, chloroplastic-like [Cucurbita pepo subsp. pepo] >XP_023527109.1 protein RETICULATA, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 723 bits (1867), Expect = 1.10e-261
Identity = 379/429 (88.34%), Postives = 379/429 (88.34%), Query Frame = 0


Query: 1   MAVFGTSCSVDFGNEVILGKMWSRGVAFGCRTFRNVVKEVAYPASARKSIGRCVTIKRKN 60
           MAVFGTSCSVDFGNEVILGKMWSRGVAFGCRTFRNVVKEVAYPASARKSIGRCVTIKRKN
Sbjct: 1   MAVFGTSCSVDFGNEVILGKMWSRGVAFGCRTFRNVVKEVAYPASARKSIGRCVTIKRKN 60

Query: 61  KLSVMMDFSQSHLDSDAPAAAIPVSKEEDETIKGKDFRISEISKVDNDNSGNGNYNNGKG 120
           KLSVMMDFSQSHLDSDAPAAAIPVSKEEDETIKGKDFRISEISKVDNDNSGNGNYNNGKG
Sbjct: 61  KLSVMMDFSQSHLDSDAPAAAIPVSKEEDETIKGKDFRISEISKVDNDNSGNGNYNNGKG 120

Query: 121 GWGGGGGGSGDDNKGDKEEEEFGPIMKFDEVMKEVESRGVSLPSDMLEAAKGEGIRKLLL 180
           GWGGGGGGSGDDNKGDKEEEEFGPIMKFDEVMKEVESRGVSLPSDMLEAAKGEGIRKLLL
Sbjct: 121 GWGGGGGGSGDDNKGDKEEEEFGPIMKFDEVMKEVESRGVSLPSDMLEAAKGEGIRKLLL 180

Query: 181 LRYLEMQGLGWPLGFLMKSCAMLRNRMLADPSFFFKVGVELVIDSCCATLAEVQKRGKDF 240
           LRYLEMQGLGWPLGFLMKSCAMLRNRMLADPSFFFKVGVELVIDSCCATLAEVQKRGKDF
Sbjct: 181 LRYLEMQGLGWPLGFLMKSCAMLRNRMLADPSFFFKVGVELVIDSCCATLAEVQKRGKDF 240

Query: 241 WTEFELYLADILVGVGVNFALVALLAPYARFGQPSVSKGFLGRTLHACEALPS------- 300
           WTEFELYLADILVGVGVNFALVALLAPYARFGQPSVSKGFLGRTLHACEALPS       
Sbjct: 241 WTEFELYLADILVGVGVNFALVALLAPYARFGQPSVSKGFLGRTLHACEALPSSVFEAER 300

Query: 301 -------------------------------------------RSIKKSEDEVPVPPLLK 360
                                                      RSIKKSEDEVPVPPLLK
Sbjct: 301 PGCRFSVQQRILTFFYKGLMYGAIGFGCGIIGQGLANLIMISKRSIKKSEDEVPVPPLLK 360

Query: 361 SAALWGVFLAVSSNTRYQIINGLERVVESSALAKYIPTVALAFTVGIRFGNNVYAGMQFI 379
           SAALWGVFLAVSSNTRYQIINGLERVVESSALAKYIPTVALAFTVGIRFGNNVYAGMQFI
Sbjct: 361 SAALWGVFLAVSSNTRYQIINGLERVVESSALAKYIPTVALAFTVGIRFGNNVYAGMQFI 420

[Close]

BLAST of Cp4.1LG03g02700 vs. NCBI nr
Match: XP_022934768.1 (protein RETICULATA, chloroplastic-like [Cucurbita moschata] >XP_022934769.1 protein RETICULATA, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 697 bits (1800), Expect = 1.77e-251
Identity = 366/429 (85.31%), Postives = 371/429 (86.48%), Query Frame = 0


Query: 1   MAVFGTSCSVDFGNEVILGKMWSRGVAFGCRTFRNVVKEVAYPASARKSIGRCVTIKRKN 60
           MAVFGTSCSVDFGNEVILGKMWSRGVAFGCR FRNVVKEVAYPASARKSIGRC+TIKRKN
Sbjct: 1   MAVFGTSCSVDFGNEVILGKMWSRGVAFGCRAFRNVVKEVAYPASARKSIGRCITIKRKN 60

Query: 61  KLSVMMDFSQSHLDSDAPAAAIPVSKEEDETIKGKDFRISEISKVDNDNSGNGNYNNGKG 120
           K SVMMDFSQSHLDSDAPAAAIPVSKEEDETI+GKDFRISEISKVDNDN GNGNYNNG+G
Sbjct: 61  KFSVMMDFSQSHLDSDAPAAAIPVSKEEDETIRGKDFRISEISKVDNDNGGNGNYNNGEG 120

Query: 121 GWGGGGGGSGDDNKGDKEEEEFGPIMKFDEVMKEVESRGVSLPSDMLEAAKGEGIRKLLL 180
           G  GGGGG+GDDNKGDKEEEEFGPIMKFDEVMKEVESRGVSLPSDMLEAAK +GIRKLLL
Sbjct: 121 GGRGGGGGNGDDNKGDKEEEEFGPIMKFDEVMKEVESRGVSLPSDMLEAAKSKGIRKLLL 180

Query: 181 LRYLEMQGLGWPLGFLMKSCAMLRNRMLADPSFFFKVGVELVIDSCCATLAEVQKRGKDF 240
           LRYLEMQGLGWPLGFLMKSCAMLRNRMLADPSFFFKVGVELVIDSCCAT AEVQKRGKDF
Sbjct: 181 LRYLEMQGLGWPLGFLMKSCAMLRNRMLADPSFFFKVGVELVIDSCCATFAEVQKRGKDF 240

Query: 241 WTEFELYLADILVGVGVNFALVALLAPYARFGQPSVSKGFLGRTLHACEALPS------- 300
           WTEFELYLADILVGVGVNFALVALLAPYARFGQPSVSKGFLGRTL ACEALPS       
Sbjct: 241 WTEFELYLADILVGVGVNFALVALLAPYARFGQPSVSKGFLGRTLRACEALPSSVFEAER 300

Query: 301 -------------------------------------------RSIKKSEDEVPVPPLLK 360
                                                      RSIKKSEDEVPVPPLLK
Sbjct: 301 PGCRFSVQQRILTFFYKGLMYGAIGFGCGIIGQGIANLIMISKRSIKKSEDEVPVPPLLK 360

Query: 361 SAALWGVFLAVSSNTRYQIINGLERVVESSALAKYIPTVALAFTVGIRFGNNVYAGMQFI 379
           SAALWGVFLAVSSNTRYQIINGLERVVESSALAKYIPTVALAFTVGIRFGNNVYAGMQFI
Sbjct: 361 SAALWGVFLAVSSNTRYQIINGLERVVESSALAKYIPTVALAFTVGIRFGNNVYAGMQFI 420

[Close]

BLAST of Cp4.1LG03g02700 vs. NCBI nr
Match: KAG6580514.1 (Protein RETICULATA-RELATED 1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 696 bits (1796), Expect = 7.77e-251
Identity = 368/431 (85.38%), Postives = 371/431 (86.08%), Query Frame = 0


Query: 1   MAVFGTSCSVDFGNEVILGKMWSRGVAFGCRTFRNVVKEVAYPASARKSIGRCVTIKRKN 60
           MAVFGTSCSVDFGNEVILGKMWSRGVAFGC  FRNVVKEVAYPASARKSIGRC+TIK KN
Sbjct: 1   MAVFGTSCSVDFGNEVILGKMWSRGVAFGCGAFRNVVKEVAYPASARKSIGRCITIKSKN 60

Query: 61  KLSVMMDFSQSHLDSDAPAAAIPVSKEEDETIKGKDFRISEISKVDNDNSGNGNYNNGKG 120
           K SVMMDFSQSHLDSDAPAAAIPVSKEEDETI+GKDFRISEISKVDNDN GNGNYNNGKG
Sbjct: 61  KFSVMMDFSQSHLDSDAPAAAIPVSKEEDETIRGKDFRISEISKVDNDNGGNGNYNNGKG 120

Query: 121 GWGGGGGG--SGDDNKGDKEEEEFGPIMKFDEVMKEVESRGVSLPSDMLEAAKGEGIRKL 180
           G GGGGGG  SGDDNKGDKEEEEFGPIMKFDEVMKEVE+RGVSLPSDMLEAAKGEGIRKL
Sbjct: 121 GGGGGGGGGGSGDDNKGDKEEEEFGPIMKFDEVMKEVEARGVSLPSDMLEAAKGEGIRKL 180

Query: 181 LLLRYLEMQGLGWPLGFLMKSCAMLRNRMLADPSFFFKVGVELVIDSCCATLAEVQKRGK 240
           LLLRYLEMQGLGWPLGFLMKSCAMLRNRMLADPSFFFKVGVELVIDSCCAT AEVQKRGK
Sbjct: 181 LLLRYLEMQGLGWPLGFLMKSCAMLRNRMLADPSFFFKVGVELVIDSCCATFAEVQKRGK 240

Query: 241 DFWTEFELYLADILVGVGVNFALVALLAPYARFGQPSVSKGFLGRTLHACEALPS----- 300
           DFWTEFELYLADILVGVGVNFALVALLAPYARFGQPSVSKGFLGRTL ACEALPS     
Sbjct: 241 DFWTEFELYLADILVGVGVNFALVALLAPYARFGQPSVSKGFLGRTLRACEALPSSVFEA 300

Query: 301 ---------------------------------------------RSIKKSEDEVPVPPL 360
                                                        RSIKKSEDEVPVPPL
Sbjct: 301 ERPGCRFSVQQRILTFFYKGLMYGAIGFGCGIIGQGIANLIMISKRSIKKSEDEVPVPPL 360

Query: 361 LKSAALWGVFLAVSSNTRYQIINGLERVVESSALAKYIPTVALAFTVGIRFGNNVYAGMQ 379
           LKSAALWGVFLAVSSNTRYQIINGLERVVESSALAKYIPTVALAFTVGIRFGNNVYAGMQ
Sbjct: 361 LKSAALWGVFLAVSSNTRYQIINGLERVVESSALAKYIPTVALAFTVGIRFGNNVYAGMQ 420

[Close]

BLAST of Cp4.1LG03g02700 vs. NCBI nr
Match: KAG7017263.1 (Protein RETICULATA-RELATED 1, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 694 bits (1791), Expect = 3.87e-250
Identity = 366/429 (85.31%), Postives = 369/429 (86.01%), Query Frame = 0


Query: 1   MAVFGTSCSVDFGNEVILGKMWSRGVAFGCRTFRNVVKEVAYPASARKSIGRCVTIKRKN 60
           MAVFGTSCSVDFGNEVILGKMWSRGVAFGC  FRNVVKEVAYPASARKSIGRC+TIK KN
Sbjct: 1   MAVFGTSCSVDFGNEVILGKMWSRGVAFGCGAFRNVVKEVAYPASARKSIGRCITIKSKN 60

Query: 61  KLSVMMDFSQSHLDSDAPAAAIPVSKEEDETIKGKDFRISEISKVDNDNSGNGNYNNGKG 120
           K SVMMDFSQSHLDSDAPAAAIPVSKEEDETI+GKDFRISEISKVDNDN GNGNYNNGKG
Sbjct: 61  KFSVMMDFSQSHLDSDAPAAAIPVSKEEDETIRGKDFRISEISKVDNDNGGNGNYNNGKG 120

Query: 121 GWGGGGGGSGDDNKGDKEEEEFGPIMKFDEVMKEVESRGVSLPSDMLEAAKGEGIRKLLL 180
           G  GGGGG GDDNKGDKEEEEFGPIMKFDEVMKEVE+RGVSLPSDMLEAAKGEGIRKLLL
Sbjct: 121 G--GGGGGGGDDNKGDKEEEEFGPIMKFDEVMKEVEARGVSLPSDMLEAAKGEGIRKLLL 180

Query: 181 LRYLEMQGLGWPLGFLMKSCAMLRNRMLADPSFFFKVGVELVIDSCCATLAEVQKRGKDF 240
           LRYLEMQGLGWPLGFLMKSCAMLRNRMLADPSFFFKVGVELVIDSCCAT AEVQKRGKDF
Sbjct: 181 LRYLEMQGLGWPLGFLMKSCAMLRNRMLADPSFFFKVGVELVIDSCCATFAEVQKRGKDF 240

Query: 241 WTEFELYLADILVGVGVNFALVALLAPYARFGQPSVSKGFLGRTLHACEALPS------- 300
           WTEFELYLADILVGVGVNFALVALLAPYARFGQPSVSKGFLGRTL ACEALPS       
Sbjct: 241 WTEFELYLADILVGVGVNFALVALLAPYARFGQPSVSKGFLGRTLRACEALPSSVFEAER 300

Query: 301 -------------------------------------------RSIKKSEDEVPVPPLLK 360
                                                      RSIKKSEDEVPVPPLLK
Sbjct: 301 PGCRFSVQQRILTFFYKGLMYGAIGFGCGIIGQGIANLIMISKRSIKKSEDEVPVPPLLK 360

Query: 361 SAALWGVFLAVSSNTRYQIINGLERVVESSALAKYIPTVALAFTVGIRFGNNVYAGMQFI 379
           SAALWGVFLAVSSNTRYQIINGLERVVESSALAKYIPTVALAFTVGIRFGNNVYAGMQFI
Sbjct: 361 SAALWGVFLAVSSNTRYQIINGLERVVESSALAKYIPTVALAFTVGIRFGNNVYAGMQFI 420

[Close]

BLAST of Cp4.1LG03g02700 vs. NCBI nr
Match: XP_022982730.1 (protein RETICULATA, chloroplastic-like [Cucurbita maxima] >XP_022982731.1 protein RETICULATA, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 690 bits (1780), Expect = 1.97e-248
Identity = 360/429 (83.92%), Postives = 368/429 (85.78%), Query Frame = 0


Query: 1   MAVFGTSCSVDFGNEVILGKMWSRGVAFGCRTFRNVVKEVAYPASARKSIGRCVTIKRKN 60
           M +FGTS SVDFGNEVILGKMWSRGV FGCRTFRNVVKEVAYPASARKS GRC+ IKRKN
Sbjct: 1   MTLFGTSYSVDFGNEVILGKMWSRGVVFGCRTFRNVVKEVAYPASARKSFGRCIAIKRKN 60

Query: 61  KLSVMMDFSQSHLDSDAPAAAIPVSKEEDETIKGKDFRISEISKVDNDNSGNGNYNNGKG 120
           K SVMMDFSQSHLDSDAPAAAIPVSK+EDET++GKDFRISEISKV+NDN GNGNYNNGKG
Sbjct: 61  KFSVMMDFSQSHLDSDAPAAAIPVSKDEDETMRGKDFRISEISKVENDNGGNGNYNNGKG 120

Query: 121 GWGGGGGGSGDDNKGDKEEEEFGPIMKFDEVMKEVESRGVSLPSDMLEAAKGEGIRKLLL 180
           G GGG GG+GDDNKGDKEEEEFGPIMKFDEVMKEVESRGVSLPSDMLEAAK EGIRKLLL
Sbjct: 121 GGGGGSGGTGDDNKGDKEEEEFGPIMKFDEVMKEVESRGVSLPSDMLEAAKSEGIRKLLL 180

Query: 181 LRYLEMQGLGWPLGFLMKSCAMLRNRMLADPSFFFKVGVELVIDSCCATLAEVQKRGKDF 240
           LRYLEMQGLGWPLGFLMKSCAM+RNRMLADPSFFFKVGVELVIDSCCAT AEVQKRGKDF
Sbjct: 181 LRYLEMQGLGWPLGFLMKSCAMIRNRMLADPSFFFKVGVELVIDSCCATFAEVQKRGKDF 240

Query: 241 WTEFELYLADILVGVGVNFALVALLAPYARFGQPSVSKGFLGRTLHACEALPS------- 300
           WTEFELYLADILVGVGVNFALVALLAPYARFGQPSVSKGFLGRTLHACEALPS       
Sbjct: 241 WTEFELYLADILVGVGVNFALVALLAPYARFGQPSVSKGFLGRTLHACEALPSSVFEAER 300

Query: 301 -------------------------------------------RSIKKSEDEVPVPPLLK 360
                                                      RSIKKSEDEVPVPPLLK
Sbjct: 301 PGCRFSVQQRILTFFYKGLMYGAIGFGCGIIGQGIANLIMISKRSIKKSEDEVPVPPLLK 360

Query: 361 SAALWGVFLAVSSNTRYQIINGLERVVESSALAKYIPTVALAFTVGIRFGNNVYAGMQFI 379
           SAALWGVFLAVSSNTRYQIINGLERVVESSALAKYIPTVALAFTVGIRFGNNVYAGMQFI
Sbjct: 361 SAALWGVFLAVSSNTRYQIINGLERVVESSALAKYIPTVALAFTVGIRFGNNVYAGMQFI 420

[Close]

BLAST of Cp4.1LG03g02700 vs. ExPASy TrEMBL
Match: A0A6J1F8K8 (protein RETICULATA, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111441846 PE=3 SV=1)

HSP 1 Score: 697 bits (1800), Expect = 8.59e-252
Identity = 366/429 (85.31%), Postives = 371/429 (86.48%), Query Frame = 0


Query: 1   MAVFGTSCSVDFGNEVILGKMWSRGVAFGCRTFRNVVKEVAYPASARKSIGRCVTIKRKN 60
           MAVFGTSCSVDFGNEVILGKMWSRGVAFGCR FRNVVKEVAYPASARKSIGRC+TIKRKN
Sbjct: 1   MAVFGTSCSVDFGNEVILGKMWSRGVAFGCRAFRNVVKEVAYPASARKSIGRCITIKRKN 60

Query: 61  KLSVMMDFSQSHLDSDAPAAAIPVSKEEDETIKGKDFRISEISKVDNDNSGNGNYNNGKG 120
           K SVMMDFSQSHLDSDAPAAAIPVSKEEDETI+GKDFRISEISKVDNDN GNGNYNNG+G
Sbjct: 61  KFSVMMDFSQSHLDSDAPAAAIPVSKEEDETIRGKDFRISEISKVDNDNGGNGNYNNGEG 120

Query: 121 GWGGGGGGSGDDNKGDKEEEEFGPIMKFDEVMKEVESRGVSLPSDMLEAAKGEGIRKLLL 180
           G  GGGGG+GDDNKGDKEEEEFGPIMKFDEVMKEVESRGVSLPSDMLEAAK +GIRKLLL
Sbjct: 121 GGRGGGGGNGDDNKGDKEEEEFGPIMKFDEVMKEVESRGVSLPSDMLEAAKSKGIRKLLL 180

Query: 181 LRYLEMQGLGWPLGFLMKSCAMLRNRMLADPSFFFKVGVELVIDSCCATLAEVQKRGKDF 240
           LRYLEMQGLGWPLGFLMKSCAMLRNRMLADPSFFFKVGVELVIDSCCAT AEVQKRGKDF
Sbjct: 181 LRYLEMQGLGWPLGFLMKSCAMLRNRMLADPSFFFKVGVELVIDSCCATFAEVQKRGKDF 240

Query: 241 WTEFELYLADILVGVGVNFALVALLAPYARFGQPSVSKGFLGRTLHACEALPS------- 300
           WTEFELYLADILVGVGVNFALVALLAPYARFGQPSVSKGFLGRTL ACEALPS       
Sbjct: 241 WTEFELYLADILVGVGVNFALVALLAPYARFGQPSVSKGFLGRTLRACEALPSSVFEAER 300

Query: 301 -------------------------------------------RSIKKSEDEVPVPPLLK 360
                                                      RSIKKSEDEVPVPPLLK
Sbjct: 301 PGCRFSVQQRILTFFYKGLMYGAIGFGCGIIGQGIANLIMISKRSIKKSEDEVPVPPLLK 360

Query: 361 SAALWGVFLAVSSNTRYQIINGLERVVESSALAKYIPTVALAFTVGIRFGNNVYAGMQFI 379
           SAALWGVFLAVSSNTRYQIINGLERVVESSALAKYIPTVALAFTVGIRFGNNVYAGMQFI
Sbjct: 361 SAALWGVFLAVSSNTRYQIINGLERVVESSALAKYIPTVALAFTVGIRFGNNVYAGMQFI 420

[Close]

BLAST of Cp4.1LG03g02700 vs. ExPASy TrEMBL
Match: A0A6J1J3N1 (protein RETICULATA, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111481511 PE=3 SV=1)

HSP 1 Score: 690 bits (1780), Expect = 9.56e-249
Identity = 360/429 (83.92%), Postives = 368/429 (85.78%), Query Frame = 0


Query: 1   MAVFGTSCSVDFGNEVILGKMWSRGVAFGCRTFRNVVKEVAYPASARKSIGRCVTIKRKN 60
           M +FGTS SVDFGNEVILGKMWSRGV FGCRTFRNVVKEVAYPASARKS GRC+ IKRKN
Sbjct: 1   MTLFGTSYSVDFGNEVILGKMWSRGVVFGCRTFRNVVKEVAYPASARKSFGRCIAIKRKN 60

Query: 61  KLSVMMDFSQSHLDSDAPAAAIPVSKEEDETIKGKDFRISEISKVDNDNSGNGNYNNGKG 120
           K SVMMDFSQSHLDSDAPAAAIPVSK+EDET++GKDFRISEISKV+NDN GNGNYNNGKG
Sbjct: 61  KFSVMMDFSQSHLDSDAPAAAIPVSKDEDETMRGKDFRISEISKVENDNGGNGNYNNGKG 120

Query: 121 GWGGGGGGSGDDNKGDKEEEEFGPIMKFDEVMKEVESRGVSLPSDMLEAAKGEGIRKLLL 180
           G GGG GG+GDDNKGDKEEEEFGPIMKFDEVMKEVESRGVSLPSDMLEAAK EGIRKLLL
Sbjct: 121 GGGGGSGGTGDDNKGDKEEEEFGPIMKFDEVMKEVESRGVSLPSDMLEAAKSEGIRKLLL 180

Query: 181 LRYLEMQGLGWPLGFLMKSCAMLRNRMLADPSFFFKVGVELVIDSCCATLAEVQKRGKDF 240
           LRYLEMQGLGWPLGFLMKSCAM+RNRMLADPSFFFKVGVELVIDSCCAT AEVQKRGKDF
Sbjct: 181 LRYLEMQGLGWPLGFLMKSCAMIRNRMLADPSFFFKVGVELVIDSCCATFAEVQKRGKDF 240

Query: 241 WTEFELYLADILVGVGVNFALVALLAPYARFGQPSVSKGFLGRTLHACEALPS------- 300
           WTEFELYLADILVGVGVNFALVALLAPYARFGQPSVSKGFLGRTLHACEALPS       
Sbjct: 241 WTEFELYLADILVGVGVNFALVALLAPYARFGQPSVSKGFLGRTLHACEALPSSVFEAER 300

Query: 301 -------------------------------------------RSIKKSEDEVPVPPLLK 360
                                                      RSIKKSEDEVPVPPLLK
Sbjct: 301 PGCRFSVQQRILTFFYKGLMYGAIGFGCGIIGQGIANLIMISKRSIKKSEDEVPVPPLLK 360

Query: 361 SAALWGVFLAVSSNTRYQIINGLERVVESSALAKYIPTVALAFTVGIRFGNNVYAGMQFI 379
           SAALWGVFLAVSSNTRYQIINGLERVVESSALAKYIPTVALAFTVGIRFGNNVYAGMQFI
Sbjct: 361 SAALWGVFLAVSSNTRYQIINGLERVVESSALAKYIPTVALAFTVGIRFGNNVYAGMQFI 420

[Close]

BLAST of Cp4.1LG03g02700 vs. ExPASy TrEMBL
Match: A0A5A7TKU7 (Protein RETICULATA OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G001340 PE=3 SV=1)

HSP 1 Score: 607 bits (1564), Expect = 1.14e-215
Identity = 323/441 (73.24%), Postives = 351/441 (79.59%), Query Frame = 0


Query: 1   MAVFGTSCSVDFGNEVILGKM-WSRGVAFGCRTFRNVVKEVAYPASARKSIGRCVTIKRK 60
           MAVFGTSCSV+FGNEV+LGKM WS+GVAFGC +FR+VVKEV YP S RK IGR + +KRK
Sbjct: 1   MAVFGTSCSVEFGNEVVLGKMMWSKGVAFGCGSFRSVVKEVGYPLSDRKGIGRSIAVKRK 60

Query: 61  NKLSVMMDFSQSHLDSDAPAAAIPV--SKEEDETIKGKDFRISEISKVDND--------- 120
           NK SV+M+FSQSHL+SDAPAAA+ V  SKEE++ I+GKDFR  E+S+VD D         
Sbjct: 61  NKFSVVMNFSQSHLNSDAPAAAVSVTLSKEEEDAIRGKDFRSMEMSEVDKDKHDGELIDG 120

Query: 121 NSGNGNYNNGKGGWGGGGGGSGDDNKGDKEEEEFGPIMKFDEVMKEVESRGVSLPSDMLE 180
           + GNG YNNG GG GGGGG  GDD++GDKEEEEFGPIMKF+EVMKE+ESRGV+LPSDMLE
Sbjct: 121 DGGNGTYNNGGGGGGGGGGDGGDDSRGDKEEEEFGPIMKFEEVMKELESRGVTLPSDMLE 180

Query: 181 AAKGEGIRKLLLLRYLEMQGLGWPLGFLMKSCAMLRNRMLADPSFFFKVGVELVIDSCCA 240
           AAK EGIRKLLLLRYLEMQGLGWPLGFLM+SCA++RNR+LADPSFFFKVGVELVIDSCCA
Sbjct: 181 AAKSEGIRKLLLLRYLEMQGLGWPLGFLMRSCALIRNRVLADPSFFFKVGVELVIDSCCA 240

Query: 241 TLAEVQKRGKDFWTEFELYLADILVGVGVNFALVALLAPYARFGQPSVSKGFLGRTLHAC 300
           T AEVQKRGKDFWTEFELYLADILVGV VNFALVALLAPYARFGQPSVSKGFLGR  HAC
Sbjct: 241 TFAEVQKRGKDFWTEFELYLADILVGVAVNFALVALLAPYARFGQPSVSKGFLGRIQHAC 300

Query: 301 EALPS--------------------------------------------------RSIKK 360
           EALPS                                                  RSIKK
Sbjct: 301 EALPSSVFEAERPGCRFSVQQRIATFFYKGLVYGVVGFGCGIIGQGIANLIMTAKRSIKK 360

Query: 361 SEDEVPVPPLLKSAALWGVFLAVSSNTRYQIINGLERVVESSALAKYIPTVALAFTVGIR 379
           SEDEVPVPPL KSAALWGVFLA+SSNTRYQIINGLERVVESS LAK IP VA+AFTVGIR
Sbjct: 361 SEDEVPVPPLFKSAALWGVFLALSSNTRYQIINGLERVVESSPLAKNIPAVAMAFTVGIR 420

[Close]

BLAST of Cp4.1LG03g02700 vs. ExPASy TrEMBL
Match: A0A1S3B6H2 (protein RETICULATA, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103486354 PE=3 SV=1)

HSP 1 Score: 607 bits (1564), Expect = 1.14e-215
Identity = 323/441 (73.24%), Postives = 351/441 (79.59%), Query Frame = 0


Query: 1   MAVFGTSCSVDFGNEVILGKM-WSRGVAFGCRTFRNVVKEVAYPASARKSIGRCVTIKRK 60
           MAVFGTSCSV+FGNEV+LGKM WS+GVAFGC +FR+VVKEV YP S RK IGR + +KRK
Sbjct: 1   MAVFGTSCSVEFGNEVVLGKMMWSKGVAFGCGSFRSVVKEVGYPLSDRKGIGRSIAVKRK 60

Query: 61  NKLSVMMDFSQSHLDSDAPAAAIPV--SKEEDETIKGKDFRISEISKVDND--------- 120
           NK SV+M+FSQSHL+SDAPAAA+ V  SKEE++ I+GKDFR  E+S+VD D         
Sbjct: 61  NKFSVVMNFSQSHLNSDAPAAAVSVTLSKEEEDAIRGKDFRSMEMSEVDKDKHDGELIDG 120

Query: 121 NSGNGNYNNGKGGWGGGGGGSGDDNKGDKEEEEFGPIMKFDEVMKEVESRGVSLPSDMLE 180
           + GNG YNNG GG GGGGG  GDD++GDKEEEEFGPIMKF+EVMKE+ESRGV+LPSDMLE
Sbjct: 121 DGGNGTYNNGGGGGGGGGGDGGDDSRGDKEEEEFGPIMKFEEVMKELESRGVTLPSDMLE 180

Query: 181 AAKGEGIRKLLLLRYLEMQGLGWPLGFLMKSCAMLRNRMLADPSFFFKVGVELVIDSCCA 240
           AAK EGIRKLLLLRYLEMQGLGWPLGFLM+SCA++RNR+LADPSFFFKVGVELVIDSCCA
Sbjct: 181 AAKSEGIRKLLLLRYLEMQGLGWPLGFLMRSCALIRNRVLADPSFFFKVGVELVIDSCCA 240

Query: 241 TLAEVQKRGKDFWTEFELYLADILVGVGVNFALVALLAPYARFGQPSVSKGFLGRTLHAC 300
           T AEVQKRGKDFWTEFELYLADILVGV VNFALVALLAPYARFGQPSVSKGFLGR  HAC
Sbjct: 241 TFAEVQKRGKDFWTEFELYLADILVGVAVNFALVALLAPYARFGQPSVSKGFLGRIQHAC 300

Query: 301 EALPS--------------------------------------------------RSIKK 360
           EALPS                                                  RSIKK
Sbjct: 301 EALPSSVFEAERPGCRFSVQQRIATFFYKGLVYGVVGFGCGIIGQGIANLIMTAKRSIKK 360

Query: 361 SEDEVPVPPLLKSAALWGVFLAVSSNTRYQIINGLERVVESSALAKYIPTVALAFTVGIR 379
           SEDEVPVPPL KSAALWGVFLA+SSNTRYQIINGLERVVESS LAK IP VA+AFTVGIR
Sbjct: 361 SEDEVPVPPLFKSAALWGVFLALSSNTRYQIINGLERVVESSPLAKNIPAVAMAFTVGIR 420

[Close]

BLAST of Cp4.1LG03g02700 vs. ExPASy TrEMBL
Match: A0A0A0LFH3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G733360 PE=3 SV=1)

HSP 1 Score: 605 bits (1560), Expect = 4.30e-215
Identity = 322/439 (73.35%), Postives = 350/439 (79.73%), Query Frame = 0


Query: 1   MAVFGTSCSVDFGNEVILGKM-WSRGVAFGCRTFRNVVKEVAYPASARKSIGRCVTIKRK 60
           MAVFGT  SV+FGNEV+LGKM WS+GVAFGCR+FR+VVKEVAYP S RK IGRC+ +KRK
Sbjct: 1   MAVFGTLYSVEFGNEVVLGKMVWSQGVAFGCRSFRSVVKEVAYPISDRKGIGRCIGVKRK 60

Query: 61  NKLSVMMDFSQSHLDSDAPAAAIPVSKEEDETIKGKDFRISEISKVDND---------NS 120
           NK SV+M FSQSHL+SDAPAAA+ VSKEED+ I+G+DFR  E+S+V +D         N 
Sbjct: 61  NKFSVVMSFSQSHLNSDAPAAAVTVSKEEDDAIRGRDFRSMEMSEVVSDKHDAELIDGNG 120

Query: 121 GNGNYNNGKGGWGGGGGGSGDDNKGDKEEEEFGPIMKFDEVMKEVESRGVSLPSDMLEAA 180
           GNG YNNG GG GG GG  GDD++GD+EEEEFGPIMKF+EVMKE+ESRGV+LPSDMLEAA
Sbjct: 121 GNGAYNNGGGGGGGRGGDGGDDSRGDREEEEFGPIMKFEEVMKELESRGVTLPSDMLEAA 180

Query: 181 KGEGIRKLLLLRYLEMQGLGWPLGFLMKSCAMLRNRMLADPSFFFKVGVELVIDSCCATL 240
           K EGIRKLLLLRYLEMQGLGWPLGFLM+SCAM+RNR+LADPSFFFKVGVELVIDSCCAT 
Sbjct: 181 KSEGIRKLLLLRYLEMQGLGWPLGFLMRSCAMIRNRVLADPSFFFKVGVELVIDSCCATF 240

Query: 241 AEVQKRGKDFWTEFELYLADILVGVGVNFALVALLAPYARFGQPSVSKGFLGRTLHACEA 300
           AEVQKRGKDFWTEFELYLADILVGV VNFALVALLAPYARFGQPSVSKGFLGR  HACEA
Sbjct: 241 AEVQKRGKDFWTEFELYLADILVGVAVNFALVALLAPYARFGQPSVSKGFLGRIQHACEA 300

Query: 301 LPS--------------------------------------------------RSIKKSE 360
           LPS                                                  RSIKKSE
Sbjct: 301 LPSSVFEAERPGCRFSVQQRIATFFYKGLVYGVVGFGCGIIGQGIANLIMTAKRSIKKSE 360

Query: 361 DEVPVPPLLKSAALWGVFLAVSSNTRYQIINGLERVVESSALAKYIPTVALAFTVGIRFG 379
           +EVPVPPL KSAALWGVFLA+SSNTRYQIINGLERVVESS LAK IP VA+AFTVGIRFG
Sbjct: 361 NEVPVPPLFKSAALWGVFLALSSNTRYQIINGLERVVESSPLAKNIPAVAMAFTVGIRFG 420

[Close]

BLAST of Cp4.1LG03g02700 vs. TAIR 10
Match: AT2G37860.3 (Protein of unknown function (DUF3411) )

HSP 1 Score: 359.4 bits (921), Expect = 3.6e-99
Identity = 220/434 (50.69%), Postives = 267/434 (61.52%), Query Frame = 0


Query: 5   GTSCSVDFGNEV-ILGKMWSRGVAFGCRTFRNVVKEVAYPA-SARKSIGRCVTIKRKNKL 64
           G + ++ F + V +  ++ S G+      FR++ K +  P    R   GR    +R    
Sbjct: 3   GCAMNLQFSSVVKVRNEISSFGICNRDFVFRDLAKAMKVPVLRIRGGSGR----QRSRLF 62

Query: 65  SVMMDFSQSHLDSDAPAAAIPVSKEEDETIKGKD----FRISEISKVDND-NSGNG-NYN 124
            V M  S     S   AA   +  E D +I GKD        ++  +D D N G+G N +
Sbjct: 63  VVNMSQSPIEPQSGGFAATEQIKGEGDNSILGKDNVRNLGTDQLENLDIDGNVGDGFNGS 122

Query: 125 NGKGGWGGGG-GGSGDDNKGDKEEEEFGPIMKFDEVMKEVESRGVSLPSDMLEAAKGEGI 184
           +G GG GGGG GG GD    D EE+EFGPI+KF+EVMKE E+RG +LPSDMLEAAK  GI
Sbjct: 123 DGNGGGGGGGNGGEGDGEGEDYEEKEFGPILKFEEVMKETEARGATLPSDMLEAAKNYGI 182

Query: 185 RKLLLLRYLEMQGLGWPLGFLMKSCAMLRNRMLADPSFFFKVGVELVIDSCCATLAEVQK 244
           RK+LLLRYL++Q     LGF ++S AMLRNRMLADPSF FK+G E+VIDSCCAT+AEVQK
Sbjct: 183 RKVLLLRYLDLQSSAGLLGFAIRSWAMLRNRMLADPSFLFKIGAEIVIDSCCATVAEVQK 242

Query: 245 RGKDFWTEFELYLADILVGVGVNFALVALLAPYARFGQPSVSKGFLGRTLHACEALPS-- 304
           RGKDFW EFELY+AD+LVG  VN ALV +LAPY RFGQPS S GFLGR + A  ALPS  
Sbjct: 243 RGKDFWAEFELYVADLLVGTVVNIALVGMLAPYVRFGQPSASPGFLGRMVFAYNALPSSV 302

Query: 305 ------------------------------------------------RSIKKSEDEVPV 364
                                                           R+I KSE+ +PV
Sbjct: 303 FEAERPGCRFSAQQRLATYFYKGIMYGAVGFGCGIVGQGIANLIMTAKRNINKSEENIPV 362

Query: 365 PPLLKSAALWGVFLAVSSNTRYQIINGLERVVESSALAKYIPTVALAFTVGIRFGNNVYA 380
           PPL+KSAALWGVFL+VSSNTRYQIINGLERVVE+S  AK  P  A+AFTVG+R  NN+Y 
Sbjct: 363 PPLIKSAALWGVFLSVSSNTRYQIINGLERVVEASPFAKKFPPAAMAFTVGVRLANNIYG 422

[Close]

BLAST of Cp4.1LG03g02700 vs. TAIR 10
Match: AT5G22790.1 (reticulata-related 1 )

HSP 1 Score: 353.6 bits (906), Expect = 2.0e-97
Identity = 201/348 (57.76%), Postives = 235/348 (67.53%), Query Frame = 0


Query: 88  EDETIKGKDFRISEISKVD--NDNSGNGNYNNGKGGWGGGGGGSGDD--NKGDK-EEEEF 147
           +DET+   +  + +    D   +N G GN  NG GG GGGG G GDD  ++ DK EE+EF
Sbjct: 87  KDETLSDLEPELDDGDGGDENGNNDGGGNGGNGDGG-GGGGDGEGDDGEDEADKAEEKEF 146

Query: 148 GPIMKFDEVMKEVESRGVSLPSDMLEAAKGEGIRKLLLLRYLEMQGLGWPLGFLMKSCAM 207
           GPI+KF+EVMKE E RG++LP DMLEAAK  GIRKL LLRYL++QG  WPLGFLM+SCAM
Sbjct: 147 GPILKFEEVMKETERRGITLPEDMLEAAKSVGIRKLFLLRYLDLQGSVWPLGFLMRSCAM 206

Query: 208 LRNRMLADPSFFFKVGVELVIDSCCATLAEVQKRGKDFWTEFELYLADILVGVGVNFALV 267
           LRNRMLADPSF FKVG E+ IDSCCAT AEVQKRG+DFW+EFELY AD+LVG+ V+ ALV
Sbjct: 207 LRNRMLADPSFLFKVGTEVAIDSCCATFAEVQKRGEDFWSEFELYAADLLVGLVVDVALV 266

Query: 268 ALLAPYARFGQPSV-SKGFLGRTLHACEALPS---------------------------- 327
            LLAPYAR G+PSV S G       AC +LPS                            
Sbjct: 267 GLLAPYARIGKPSVASTGLFKDLKRACASLPSSVFEAERPGCKFSVNQRIATFFYKGLLY 326

Query: 328 ----------------------RSIKKSEDEVPVPPLLKSAALWGVFLAVSSNTRYQIIN 380
                                 RS+KKSE++VP+PPL +SAALWGVFL +SSN RYQIIN
Sbjct: 327 GSVGFGCGLIGQGIANLIMTAKRSVKKSEEDVPIPPLFESAALWGVFLGLSSNARYQIIN 386

[Close]

BLAST of Cp4.1LG03g02700 vs. TAIR 10
Match: AT2G37860.2 (Protein of unknown function (DUF3411) )

HSP 1 Score: 250.0 bits (637), Expect = 3.1e-66
Identity = 157/298 (52.68%), Postives = 194/298 (65.10%), Query Frame = 0


Query: 5   GTSCSVDFGNEV-ILGKMWSRGVAFGCRTFRNVVKEVAYPA-SARKSIGRCVTIKRKNKL 64
           G + ++ F + V +  ++ S G+      FR++ K +  P    R   GR    +R    
Sbjct: 3   GCAMNLQFSSVVKVRNEISSFGICNRDFVFRDLAKAMKVPVLRIRGGSGR----QRSRLF 62

Query: 65  SVMMDFSQSHLDSDAPAAAIPVSKEEDETIKGKD----FRISEISKVDND-NSGNG-NYN 124
            V M  S     S   AA   +  E D +I GKD        ++  +D D N G+G N +
Sbjct: 63  VVNMSQSPIEPQSGGFAATEQIKGEGDNSILGKDNVRNLGTDQLENLDIDGNVGDGFNGS 122

Query: 125 NGKGGWGGGG-GGSGDDNKGDKEEEEFGPIMKFDEVMKEVESRGVSLPSDMLEAAKGEGI 184
           +G GG GGGG GG GD    D EE+EFGPI+KF+EVMKE E+RG +LPSDMLEAAK  GI
Sbjct: 123 DGNGGGGGGGNGGEGDGEGEDYEEKEFGPILKFEEVMKETEARGATLPSDMLEAAKNYGI 182

Query: 185 RKLLLLRYLEMQGLGWPLGFLMKSCAMLRNRMLADPSFFFKVGVELVIDSCCATLAEVQK 244
           RK+LLLRYL++Q     LGF ++S AMLRNRMLADPSF FK+G E+VIDSCCAT+AEVQK
Sbjct: 183 RKVLLLRYLDLQSSAGLLGFAIRSWAMLRNRMLADPSFLFKIGAEIVIDSCCATVAEVQK 242

Query: 245 RGKDFWTEFELYLADILVGVGVNFALVALLAPYARFGQPSVSKGFLGRTLHACEALPS 294
           RGKDFW EFELY+AD+LVG  VN ALV +LAPY RFGQPS S GFLGR + A  ALPS
Sbjct: 243 RGKDFWAEFELYVADLLVGTVVNIALVGMLAPYVRFGQPSASPGFLGRMVFAYNALPS 296

[Close]

BLAST of Cp4.1LG03g02700 vs. TAIR 10
Match: AT2G37860.1 (Protein of unknown function (DUF3411) )

HSP 1 Score: 250.0 bits (637), Expect = 3.1e-66
Identity = 157/298 (52.68%), Postives = 194/298 (65.10%), Query Frame = 0


Query: 5   GTSCSVDFGNEV-ILGKMWSRGVAFGCRTFRNVVKEVAYPA-SARKSIGRCVTIKRKNKL 64
           G + ++ F + V +  ++ S G+      FR++ K +  P    R   GR    +R    
Sbjct: 3   GCAMNLQFSSVVKVRNEISSFGICNRDFVFRDLAKAMKVPVLRIRGGSGR----QRSRLF 62

Query: 65  SVMMDFSQSHLDSDAPAAAIPVSKEEDETIKGKD----FRISEISKVDND-NSGNG-NYN 124
            V M  S     S   AA   +  E D +I GKD        ++  +D D N G+G N +
Sbjct: 63  VVNMSQSPIEPQSGGFAATEQIKGEGDNSILGKDNVRNLGTDQLENLDIDGNVGDGFNGS 122

Query: 125 NGKGGWGGGG-GGSGDDNKGDKEEEEFGPIMKFDEVMKEVESRGVSLPSDMLEAAKGEGI 184
           +G GG GGGG GG GD    D EE+EFGPI+KF+EVMKE E+RG +LPSDMLEAAK  GI
Sbjct: 123 DGNGGGGGGGNGGEGDGEGEDYEEKEFGPILKFEEVMKETEARGATLPSDMLEAAKNYGI 182

Query: 185 RKLLLLRYLEMQGLGWPLGFLMKSCAMLRNRMLADPSFFFKVGVELVIDSCCATLAEVQK 244
           RK+LLLRYL++Q     LGF ++S AMLRNRMLADPSF FK+G E+VIDSCCAT+AEVQK
Sbjct: 183 RKVLLLRYLDLQSSAGLLGFAIRSWAMLRNRMLADPSFLFKIGAEIVIDSCCATVAEVQK 242

Query: 245 RGKDFWTEFELYLADILVGVGVNFALVALLAPYARFGQPSVSKGFLGRTLHACEALPS 294
           RGKDFW EFELY+AD+LVG  VN ALV +LAPY RFGQPS S GFLGR + A  ALPS
Sbjct: 243 RGKDFWAEFELYVADLLVGTVVNIALVGMLAPYVRFGQPSASPGFLGRMVFAYNALPS 296

[Close]

BLAST of Cp4.1LG03g02700 vs. TAIR 10
Match: AT5G12470.1 (Protein of unknown function (DUF3411) )

HSP 1 Score: 96.7 bits (239), Expect = 4.4e-20
Identity = 97/336 (28.87%), Postives = 154/336 (45.83%), Query Frame = 0


Query: 102 ISKVDNDNSGN-GNYNNGKGGWGGGGGGSGDDNKGDKEEEEFGPIMKFDEVMKEVESRGV 161
           I+ V + +SGN G+ NNG G  GGGGGG G  N GD   +E     + +E M  ++  G+
Sbjct: 56  ITPVLSASSGNGGSDNNGGGLSGGGGGGDGGKNDGDGHGDEDRDRNR-NEAMLLLKESGI 115

Query: 162 ---SLPSDMLEAAKGEGIRKLLLLRYLEMQG---LGWPLGFLMKSCAMLRNRMLADPSFF 221
              SLP D+  A +   I   ++ R+LE+Q    + W + F        R R+LAD  F 
Sbjct: 116 ELESLPKDLAAAIEAGRIPGSVITRFLELQKSAVMRWLMQF-----GGFRERLLADDLFM 175

Query: 222 FKVGVELVIDSCCATLAEVQKRGKDFWTEFELYLADILVGVGVNFALVALLAPYARFGQP 281
            K+ +E  +     T AE ++R ++F+ E E+  AD+ + +  +F LV L AP      P
Sbjct: 176 AKLAMECGVGIFTKTAAEYERRRENFFNELEVVFADVAMAIIADFMLVYLPAPTVSLRPP 235

Query: 282 -SVSKGFLGRTLHAC-----------------------------------------EALP 341
            +++ G + +  H C                                          A+ 
Sbjct: 236 LALTAGGISKFFHNCPDNAFQVALSGTSYTLLQRLGAITRNGAKLFAVGTTSSLVGTAIT 295

Query: 342 SRSIK-------KSEDEVPVPPLLKSAALWGVFLAVSSNTRYQIINGL--ERVVESSALA 380
           +  IK        SE EV   P++ ++  +GV++AVSSN RYQI+ G+  +R++E     
Sbjct: 296 NAFIKARKAVDQNSEGEVETVPIVSTSVAYGVYMAVSSNLRYQIVAGVIEQRLLEPMLHQ 355

The following BLAST results are available for this feature:

BLAST of Cp4.1LG03g02700 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
B9DFK5	5.1e-98	50.69	Protein RETICULATA, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RE PE=1 SV=...	[more]
Q9FGP9	2.8e-96	57.76	Protein RETICULATA-RELATED 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=R...	[more]
Q94CJ5	6.1e-19	28.87	Protein RETICULATA-RELATED 4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=R...	[more]
Q9C9Z3	3.4e-09	25.64	Protein RETICULATA-RELATED 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=R...	[more]
Q9C9Z2	2.9e-08	24.92	Protein RETICULATA-RELATED 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=R...	[more]

BLAST of Cp4.1LG03g02700 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023527108.1	1.10e-261	88.34	protein RETICULATA, chloroplastic-like [Cucurbita pepo subsp. pepo] >XP_02352710...	[more]
XP_022934768.1	1.77e-251	85.31	protein RETICULATA, chloroplastic-like [Cucurbita moschata] >XP_022934769.1 prot...	[more]
KAG6580514.1	7.77e-251	85.38	Protein RETICULATA-RELATED 1, chloroplastic, partial [Cucurbita argyrosperma sub...	[more]
KAG7017263.1	3.87e-250	85.31	Protein RETICULATA-RELATED 1, chloroplastic, partial [Cucurbita argyrosperma sub...	[more]
XP_022982730.1	1.97e-248	83.92	protein RETICULATA, chloroplastic-like [Cucurbita maxima] >XP_022982731.1 protei...	[more]

BLAST of Cp4.1LG03g02700 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F8K8	8.59e-252	85.31	protein RETICULATA, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC11144...	[more]
A0A6J1J3N1	9.56e-249	83.92	protein RETICULATA, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC1114815...	[more]
A0A5A7TKU7	1.14e-215	73.24	Protein RETICULATA OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G0...	[more]
A0A1S3B6H2	1.14e-215	73.24	protein RETICULATA, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103486354 P...	[more]
A0A0A0LFH3	4.30e-215	73.35	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G733360 PE=3 SV=1	[more]

BLAST of Cp4.1LG03g02700 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G37860.3	3.6e-99	50.69	Protein of unknown function (DUF3411)	[more]
AT5G22790.1	2.0e-97	57.76	reticulata-related 1	[more]
AT2G37860.2	3.1e-66	52.68	Protein of unknown function (DUF3411)	[more]
AT2G37860.1	3.1e-66	52.68	Protein of unknown function (DUF3411)	[more]
AT5G12470.1	4.4e-20	28.87	Protein of unknown function (DUF3411)	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021825	Protein RETICULATA-related	PFAM	PF11891	RETICULATA-like	coord: 297..333 e-value: 1.5E-11 score: 44.4 coord: 205..293 e-value: 1.1E-24 score: 87.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 103..139
None	No IPR available	PANTHER	PTHR31038:SF18	PROTEIN RETICULATA-RELATED 1, CHLOROPLASTIC	coord: 294..379
None	No IPR available	PANTHER	PTHR31038:SF18	PROTEIN RETICULATA-RELATED 1, CHLOROPLASTIC	coord: 84..293
None	No IPR available	PANTHER	PTHR31038	EXPRESSED PROTEIN-RELATED	coord: 84..293
None	No IPR available	PANTHER	PTHR31038	EXPRESSED PROTEIN-RELATED	coord: 294..379

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG03g02700.1	Cp4.1LG03g02700.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0099402	plant organ development
cellular_component	GO:0031969	chloroplast membrane
cellular_component	GO:0016021	integral component of membrane