Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGCCCTCTACGCCGGGCACCGCTATTTCTTTGGCTCCGCCGCCGTGCGTTTCAGAAACAGAAGCACCAGCCCCAGATCGGTCGTCCTCCTCTGCCTCCATAACCAAGACCCTTCAGATCCTTCAGAAGAAAAGCCGAAGAACGGTGAAGAAAGAAAACAGTCGATTCCAGGGATTGTTCAGAGATTCGAGAAGATGGGAATAGAATTGAAGGAGAAATTAAGCCCTCAGAGAAAAGGGGACTGGAAGGATTTGACATTGATGAGCCTTTCATTTGCTGTTTATGTGTATATTTCTCAGAAGATTGTTTGTGCTTATTTTGTTTGGATGTCAATGCCAAAGCAAGTATGGTAGAACATGATGGATTTCAAAGGGGAGATTTATCAGATCTCTTTATTGTTGTTGTATGAAATCTGTGCATAAGTTTGTAAATGTGTACAAGAACTTGTTCAAATCTCGATATTCTTAACCAGATGAGCTATGTTCGATGTTCATAATCGTTATTCGATTCATGTAAAACTTTAAATCTAGACATGTTTGTAAAGAAGAGAGTAAGTGAATGCATTATTTCAAATATTCAACTCAGCCACTGAAAACCACCTGTGTTAACAACTAATGTTTGATGCAGAGGAGAAAATTCAAGACTAA
mRNA sequence
ATGGCAGCCCTCTACGCCGGGCACCGCTATTTCTTTGGCTCCGCCGCCGTGCGTTTCAGAAACAGAAGCACCAGCCCCAGATCGGTCGTCCTCCTCTGCCTCCATAACCAAGACCCTTCAGATCCTTCAGAAGAAAAGCCGAAGAACGGTGAAGAAAGAAAACAGTCGATTCCAGGGATTGTTCAGAGATTCGAGAAGATGGGAATAGAATTGAAGGAGAAATTAAGCCCTCAGAGAAAAGGGGACTGGAAGGATTTGACATTGATGAGCCTTTCATTTGCTGTTTATGTGTATATTTCTCAGAAGATTGTTTAGGAGAAAATTCAAGACTAA
Coding sequence (CDS)
ATGGCAGCCCTCTACGCCGGGCACCGCTATTTCTTTGGCTCCGCCGCCGTGCGTTTCAGAAACAGAAGCACCAGCCCCAGATCGGTCGTCCTCCTCTGCCTCCATAACCAAGACCCTTCAGATCCTTCAGAAGAAAAGCCGAAGAACGGTGAAGAAAGAAAACAGTCGATTCCAGGGATTGTTCAGAGATTCGAGAAGATGGGAATAGAATTGAAGGAGAAATTAAGCCCTCAGAGAAAAGGGGACTGGAAGGATTTGACATTGATGAGCCTTTCATTTGCTGTTTATGTGTATATTTCTCAGAAGATTGTTTAG
Protein sequence
MAALYAGHRYFFGSAAVRFRNRSTSPRSVVLLCLHNQDPSDPSEEKPKNGEERKQSIPGIVQRFEKMGIELKEKLSPQRKGDWKDLTLMSLSFAVYVYISQKIV
Homology
BLAST of Cp4.1LG02g15720 vs. NCBI nr
Match:
KAG6606884.1 (hypothetical protein SDJN03_00226, partial [Cucurbita argyrosperma subsp. sororia] >KAG7036590.1 hypothetical protein SDJN02_00209, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 186 bits (473), Expect = 7.23e-59
Identity = 95/107 (88.79%), Postives = 98/107 (91.59%), Query Frame = 0
Query: 1 MAALYAGHRYFFGSAAVRFRNRSTSPRSVVLLCLHNQ---DPSDPSEEKPKNGEERKQSI 60
MAAL AGHRYFFGSAAV FRNRS SPRS+VLLCLHNQ DPSDPSEEKPK +E+KQSI
Sbjct: 1 MAALSAGHRYFFGSAAVHFRNRSISPRSIVLLCLHNQNPSDPSDPSEEKPKKEQEKKQSI 60
Query: 61 PGIVQRFEKMGIELKEKLSPQRKGDWKDLTLMSLSFAVYVYISQKIV 104
PG VQRFEKMGIELKEKLSPQRKGDWKDLTLMSLSFAVYVYISQKIV
Sbjct: 61 PGFVQRFEKMGIELKEKLSPQRKGDWKDLTLMSLSFAVYVYISQKIV 107
BLAST of Cp4.1LG02g15720 vs. NCBI nr
Match:
KAA0048367.1 (putative RNA/RNP complex-1-interacting phosphatase [Cucumis melo var. makuwa] >TYK04067.1 putative RNA/RNP complex-1-interacting phosphatase [Cucumis melo var. makuwa])
HSP 1 Score: 160 bits (404), Expect = 2.78e-48
Identity = 83/112 (74.11%), Postives = 93/112 (83.04%), Query Frame = 0
Query: 1 MAALYAGHRYFF----GSAAVRFRNRSTSPRSVVLLCLHNQDPSDPS----EEKPKNGEE 60
MAAL AGHR+FF GSA V+FRNRS SPRS+ +LCLHNQDPSDP+ E+ K +E
Sbjct: 1 MAALSAGHRHFFYSLSGSAIVQFRNRSISPRSIAVLCLHNQDPSDPTDCSDEKTKKKSQE 60
Query: 61 RKQSIPGIVQRFEKMGIELKEKLSPQRKGDWKDLTLMSLSFAVYVYISQKIV 104
RK+ + G VQRFEKMGI+LKEKLSPQRKGDWKDLTLMSLSFAVYVYISQKIV
Sbjct: 61 RKEMVHGFVQRFEKMGIQLKEKLSPQRKGDWKDLTLMSLSFAVYVYISQKIV 112
BLAST of Cp4.1LG02g15720 vs. NCBI nr
Match:
KGN58582.1 (hypothetical protein Csa_001602 [Cucumis sativus])
HSP 1 Score: 158 bits (399), Expect = 1.61e-47
Identity = 85/112 (75.89%), Postives = 93/112 (83.04%), Query Frame = 0
Query: 1 MAALYAGHRYFF----GSAAVRFRNRSTSPRSVVLLCLHNQDPSDP---SEEKPKN-GEE 60
MAAL AGHR+FF GSA + FRNRS SPRS+ +LCLHNQDPSDP SEEK K +E
Sbjct: 1 MAALSAGHRHFFYSQSGSATLLFRNRSISPRSISVLCLHNQDPSDPTDCSEEKTKKKSQE 60
Query: 61 RKQSIPGIVQRFEKMGIELKEKLSPQRKGDWKDLTLMSLSFAVYVYISQKIV 104
RK+ + G VQRFEKMGI+LKEKLSPQRKGDWKDLTLMSLSFAVYVYISQKIV
Sbjct: 61 RKEMVHGFVQRFEKMGIQLKEKLSPQRKGDWKDLTLMSLSFAVYVYISQKIV 112
BLAST of Cp4.1LG02g15720 vs. NCBI nr
Match:
KAG6581569.1 (hypothetical protein SDJN03_21571, partial [Cucurbita argyrosperma subsp. sororia] >KAG7018076.1 hypothetical protein SDJN02_19942, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 153 bits (386), Expect = 1.20e-45
Identity = 79/106 (74.53%), Postives = 89/106 (83.96%), Query Frame = 0
Query: 1 MAALYAGHRYFFGSAAVRFRNRSTSPRSVVLLCLHN--QDPSDPSEEKPKNGEERKQSIP 60
MAAL AGHR+FF AV+F NRS SPR +VLLC HN QDPSD SEEK K +E KQ +P
Sbjct: 1 MAALSAGHRHFF--PAVQFGNRSISPRPIVLLCCHNHNQDPSDSSEEKTKKDQEGKQMVP 60
Query: 61 GIVQRFEKMGIELKEKLSPQRKGDWKDLTLMSLSFAVYVYISQKIV 104
G +QR++KMG+ELKEKLSPQRKGDWKD+TLMSLSFAVYVYISQKIV
Sbjct: 61 GFIQRYKKMGMELKEKLSPQRKGDWKDVTLMSLSFAVYVYISQKIV 104
BLAST of Cp4.1LG02g15720 vs. NCBI nr
Match:
XP_022152649.1 (uncharacterized protein LOC111020315 [Momordica charantia])
HSP 1 Score: 144 bits (364), Expect = 2.77e-42
Identity = 78/107 (72.90%), Postives = 88/107 (82.24%), Query Frame = 0
Query: 1 MAALYAGHRYFF--GSAAVRFRNRSTSPRSVVLLCLHNQDPSDPSEEKPKNGEERKQS-I 60
MAAL AGHR+FF G+AA + R R +SP+S+VLLC H+QDPS EE K GEERKQ I
Sbjct: 1 MAALSAGHRHFFRRGAAAQQLRTRRSSPKSIVLLCRHSQDPS---EENSKEGEERKQQKI 60
Query: 61 PGIVQRFEKMGIELKEKLSPQRKGDWKDLTLMSLSFAVYVYISQKIV 104
G V+RFEKMG+ELKEKLSPQRKGDWKD+ LMSLSFAVYVYISQKIV
Sbjct: 61 GGFVERFEKMGMELKEKLSPQRKGDWKDVALMSLSFAVYVYISQKIV 104
BLAST of Cp4.1LG02g15720 vs. ExPASy TrEMBL
Match:
A0A5D3BX35 (Putative RNA/RNP complex-1-interacting phosphatase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1871G00020 PE=4 SV=1)
HSP 1 Score: 160 bits (404), Expect = 1.35e-48
Identity = 83/112 (74.11%), Postives = 93/112 (83.04%), Query Frame = 0
Query: 1 MAALYAGHRYFF----GSAAVRFRNRSTSPRSVVLLCLHNQDPSDPS----EEKPKNGEE 60
MAAL AGHR+FF GSA V+FRNRS SPRS+ +LCLHNQDPSDP+ E+ K +E
Sbjct: 1 MAALSAGHRHFFYSLSGSAIVQFRNRSISPRSIAVLCLHNQDPSDPTDCSDEKTKKKSQE 60
Query: 61 RKQSIPGIVQRFEKMGIELKEKLSPQRKGDWKDLTLMSLSFAVYVYISQKIV 104
RK+ + G VQRFEKMGI+LKEKLSPQRKGDWKDLTLMSLSFAVYVYISQKIV
Sbjct: 61 RKEMVHGFVQRFEKMGIQLKEKLSPQRKGDWKDLTLMSLSFAVYVYISQKIV 112
BLAST of Cp4.1LG02g15720 vs. ExPASy TrEMBL
Match:
A0A0A0LD14 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G690300 PE=4 SV=1)
HSP 1 Score: 158 bits (399), Expect = 7.78e-48
Identity = 85/112 (75.89%), Postives = 93/112 (83.04%), Query Frame = 0
Query: 1 MAALYAGHRYFF----GSAAVRFRNRSTSPRSVVLLCLHNQDPSDP---SEEKPKN-GEE 60
MAAL AGHR+FF GSA + FRNRS SPRS+ +LCLHNQDPSDP SEEK K +E
Sbjct: 1 MAALSAGHRHFFYSQSGSATLLFRNRSISPRSISVLCLHNQDPSDPTDCSEEKTKKKSQE 60
Query: 61 RKQSIPGIVQRFEKMGIELKEKLSPQRKGDWKDLTLMSLSFAVYVYISQKIV 104
RK+ + G VQRFEKMGI+LKEKLSPQRKGDWKDLTLMSLSFAVYVYISQKIV
Sbjct: 61 RKEMVHGFVQRFEKMGIQLKEKLSPQRKGDWKDLTLMSLSFAVYVYISQKIV 112
BLAST of Cp4.1LG02g15720 vs. ExPASy TrEMBL
Match:
A0A6J1DGN1 (uncharacterized protein LOC111020315 OS=Momordica charantia OX=3673 GN=LOC111020315 PE=4 SV=1)
HSP 1 Score: 144 bits (364), Expect = 1.34e-42
Identity = 78/107 (72.90%), Postives = 88/107 (82.24%), Query Frame = 0
Query: 1 MAALYAGHRYFF--GSAAVRFRNRSTSPRSVVLLCLHNQDPSDPSEEKPKNGEERKQS-I 60
MAAL AGHR+FF G+AA + R R +SP+S+VLLC H+QDPS EE K GEERKQ I
Sbjct: 1 MAALSAGHRHFFRRGAAAQQLRTRRSSPKSIVLLCRHSQDPS---EENSKEGEERKQQKI 60
Query: 61 PGIVQRFEKMGIELKEKLSPQRKGDWKDLTLMSLSFAVYVYISQKIV 104
G V+RFEKMG+ELKEKLSPQRKGDWKD+ LMSLSFAVYVYISQKIV
Sbjct: 61 GGFVERFEKMGMELKEKLSPQRKGDWKDVALMSLSFAVYVYISQKIV 104
BLAST of Cp4.1LG02g15720 vs. ExPASy TrEMBL
Match:
A0A6A1VEY0 (Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR6G017560 PE=4 SV=1)
HSP 1 Score: 100 bits (249), Expect = 4.13e-25
Identity = 55/107 (51.40%), Postives = 72/107 (67.29%), Query Frame = 0
Query: 1 MAALYAGHRYFFGSAAVRFRNRSTSPRSVVLLCLHNQDPSDPSEEKPKNGEERKQSIPGI 60
MAAL GH + + ++ +S+SP++++LLC N P+D S KP+ +E K P +
Sbjct: 1 MAALSVGHSLYRKHSKIQGPRKSSSPKALILLCCRNDKPTDAS--KPRTTKESKGESPPL 60
Query: 61 VQ---RFEKMGIELKEKLSPQRKGDWKDLTLMSLSFAVYVYISQKIV 104
+ FEK G LKE LSPQRKGDWKD+ LMSLSFAVYVYISQ+IV
Sbjct: 61 QRISVGFEKFGKVLKENLSPQRKGDWKDVMLMSLSFAVYVYISQRIV 105
BLAST of Cp4.1LG02g15720 vs. ExPASy TrEMBL
Match:
A0A6P9E117 (uncharacterized protein LOC118344507 OS=Juglans regia OX=51240 GN=LOC118344507 PE=4 SV=1)
HSP 1 Score: 99.4 bits (246), Expect = 1.15e-24
Identity = 51/104 (49.04%), Postives = 67/104 (64.42%), Query Frame = 0
Query: 1 MAALYAGHRYFFGSAAVRFRNRSTSPRSVVLLCLHNQDPSDPSEEKPKNGEERKQSIPGI 60
MAAL GH + ++ + +SPR+ +LL + P+D S + K R+ +PGI
Sbjct: 1 MAALLVGHSLYRRICTIQEPRKKSSPRTFILLGCQSHKPADTSNPRTKKESRRESLLPGI 60
Query: 61 VQRFEKMGIELKEKLSPQRKGDWKDLTLMSLSFAVYVYISQKIV 104
+ F K G LKE +SPQ+KGDWKD+ LMSLSFAVYVYISQKIV
Sbjct: 61 LVGFGKFGKVLKENMSPQQKGDWKDVMLMSLSFAVYVYISQKIV 104
BLAST of Cp4.1LG02g15720 vs. TAIR 10
Match:
AT3G52070.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 23 Blast hits to 23 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )
HSP 1 Score: 48.1 bits (113), Expect = 4.9e-06
Identity = 31/61 (50.82%), Postives = 41/61 (67.21%), Query Frame = 0
Query: 53 RKQSIP----GIVQRFEKMGI----ELKEKLSPQ-RKGDWKDLTLMSLSFAVYVYISQKI 105
RKQ +P G++QR + I ++ + L P+ +KGD KDL LMSLSFAVYVYISQ +
Sbjct: 38 RKQKLPEENEGVIQRTLRRMISEAGKIGKNLKPEKKKGDVKDLMLMSLSFAVYVYISQLL 97
BLAST of Cp4.1LG02g15720 vs. TAIR 10
Match:
AT3G52070.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 23 Blast hits to 23 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )
HSP 1 Score: 48.1 bits (113), Expect = 4.9e-06
Identity = 31/61 (50.82%), Postives = 41/61 (67.21%), Query Frame = 0
Query: 53 RKQSIP----GIVQRFEKMGI----ELKEKLSPQ-RKGDWKDLTLMSLSFAVYVYISQKI 105
RKQ +P G++QR + I ++ + L P+ +KGD KDL LMSLSFAVYVYISQ +
Sbjct: 38 RKQKLPEENEGVIQRTLRRMISEAGKIGKNLKPEKKKGDVKDLMLMSLSFAVYVYISQLL 97
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| KAG6606884.1 | 7.23e-59 | 88.79 | hypothetical protein SDJN03_00226, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| KAA0048367.1 | 2.78e-48 | 74.11 | putative RNA/RNP complex-1-interacting phosphatase [Cucumis melo var. makuwa] >T... | [more] |
| KGN58582.1 | 1.61e-47 | 75.89 | hypothetical protein Csa_001602 [Cucumis sativus] | [more] |
| KAG6581569.1 | 1.20e-45 | 74.53 | hypothetical protein SDJN03_21571, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| XP_022152649.1 | 2.77e-42 | 72.90 | uncharacterized protein LOC111020315 [Momordica charantia] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| A0A5D3BX35 | 1.35e-48 | 74.11 | Putative RNA/RNP complex-1-interacting phosphatase OS=Cucumis melo var. makuwa O... | [more] |
| A0A0A0LD14 | 7.78e-48 | 75.89 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G690300 PE=4 SV=1 | [more] |
| A0A6J1DGN1 | 1.34e-42 | 72.90 | uncharacterized protein LOC111020315 OS=Momordica charantia OX=3673 GN=LOC111020... | [more] |
| A0A6A1VEY0 | 4.13e-25 | 51.40 | Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR6G017560 PE=4 SV=1 | [more] |
| A0A6P9E117 | 1.15e-24 | 49.04 | uncharacterized protein LOC118344507 OS=Juglans regia OX=51240 GN=LOC118344507 P... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| AT3G52070.1 | 4.9e-06 | 50.82 | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... | [more] |
| AT3G52070.2 | 4.9e-06 | 50.82 | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... | [more] |
