Cp4.1LG02g15720 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG02g15720
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	RNA/RNP complex-1-interacting phosphatase, putative
Location	Cp4.1LG02: 13293195 .. 13293845 (+)
RNA-Seq Expression	Cp4.1LG02g15720
Synteny	Cp4.1LG02g15720

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGCCCTCTACGCCGGGCACCGCTATTTCTTTGGCTCCGCCGCCGTGCGTTTCAGAAACAGAAGCACCAGCCCCAGATCGGTCGTCCTCCTCTGCCTCCATAACCAAGACCCTTCAGATCCTTCAGAAGAAAAGCCGAAGAACGGTGAAGAAAGAAAACAGTCGATTCCAGGGATTGTTCAGAGATTCGAGAAGATGGGAATAGAATTGAAGGAGAAATTAAGCCCTCAGAGAAAAGGGGACTGGAAGGATTTGACATTGATGAGCCTTTCATTTGCTGTTTATGTGTATATTTCTCAGAAGATTGTTTGTGCTTATTTTGTTTGGATGTCAATGCCAAAGCAAGTATGGTAGAACATGATGGATTTCAAAGGGGAGATTTATCAGATCTCTTTATTGTTGTTGTATGAAATCTGTGCATAAGTTTGTAAATGTGTACAAGAACTTGTTCAAATCTCGATATTCTTAACCAGATGAGCTATGTTCGATGTTCATAATCGTTATTCGATTCATGTAAAACTTTAAATCTAGACATGTTTGTAAAGAAGAGAGTAAGTGAATGCATTATTTCAAATATTCAACTCAGCCACTGAAAACCACCTGTGTTAACAACTAATGTTTGATGCAGAGGAGAAAATTCAAGACTAA

mRNA sequence

ATGGCAGCCCTCTACGCCGGGCACCGCTATTTCTTTGGCTCCGCCGCCGTGCGTTTCAGAAACAGAAGCACCAGCCCCAGATCGGTCGTCCTCCTCTGCCTCCATAACCAAGACCCTTCAGATCCTTCAGAAGAAAAGCCGAAGAACGGTGAAGAAAGAAAACAGTCGATTCCAGGGATTGTTCAGAGATTCGAGAAGATGGGAATAGAATTGAAGGAGAAATTAAGCCCTCAGAGAAAAGGGGACTGGAAGGATTTGACATTGATGAGCCTTTCATTTGCTGTTTATGTGTATATTTCTCAGAAGATTGTTTAGGAGAAAATTCAAGACTAA

Coding sequence (CDS)

ATGGCAGCCCTCTACGCCGGGCACCGCTATTTCTTTGGCTCCGCCGCCGTGCGTTTCAGAAACAGAAGCACCAGCCCCAGATCGGTCGTCCTCCTCTGCCTCCATAACCAAGACCCTTCAGATCCTTCAGAAGAAAAGCCGAAGAACGGTGAAGAAAGAAAACAGTCGATTCCAGGGATTGTTCAGAGATTCGAGAAGATGGGAATAGAATTGAAGGAGAAATTAAGCCCTCAGAGAAAAGGGGACTGGAAGGATTTGACATTGATGAGCCTTTCATTTGCTGTTTATGTGTATATTTCTCAGAAGATTGTTTAG

Protein sequence

MAALYAGHRYFFGSAAVRFRNRSTSPRSVVLLCLHNQDPSDPSEEKPKNGEERKQSIPGIVQRFEKMGIELKEKLSPQRKGDWKDLTLMSLSFAVYVYISQKIV

Homology

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BLAST of Cp4.1LG02g15720 vs. NCBI nr
Match: KAG6606884.1 (hypothetical protein SDJN03_00226, partial [Cucurbita argyrosperma subsp. sororia] >KAG7036590.1 hypothetical protein SDJN02_00209, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 186 bits (473), Expect = 7.23e-59
Identity = 95/107 (88.79%), Postives = 98/107 (91.59%), Query Frame = 0


Query: 1   MAALYAGHRYFFGSAAVRFRNRSTSPRSVVLLCLHNQ---DPSDPSEEKPKNGEERKQSI 60
           MAAL AGHRYFFGSAAV FRNRS SPRS+VLLCLHNQ   DPSDPSEEKPK  +E+KQSI
Sbjct: 1   MAALSAGHRYFFGSAAVHFRNRSISPRSIVLLCLHNQNPSDPSDPSEEKPKKEQEKKQSI 60

Query: 61  PGIVQRFEKMGIELKEKLSPQRKGDWKDLTLMSLSFAVYVYISQKIV 104
           PG VQRFEKMGIELKEKLSPQRKGDWKDLTLMSLSFAVYVYISQKIV
Sbjct: 61  PGFVQRFEKMGIELKEKLSPQRKGDWKDLTLMSLSFAVYVYISQKIV 107

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BLAST of Cp4.1LG02g15720 vs. NCBI nr
Match: KAA0048367.1 (putative RNA/RNP complex-1-interacting phosphatase [Cucumis melo var. makuwa] >TYK04067.1 putative RNA/RNP complex-1-interacting phosphatase [Cucumis melo var. makuwa])

HSP 1 Score: 160 bits (404), Expect = 2.78e-48
Identity = 83/112 (74.11%), Postives = 93/112 (83.04%), Query Frame = 0


Query: 1   MAALYAGHRYFF----GSAAVRFRNRSTSPRSVVLLCLHNQDPSDPS----EEKPKNGEE 60
           MAAL AGHR+FF    GSA V+FRNRS SPRS+ +LCLHNQDPSDP+    E+  K  +E
Sbjct: 1   MAALSAGHRHFFYSLSGSAIVQFRNRSISPRSIAVLCLHNQDPSDPTDCSDEKTKKKSQE 60

Query: 61  RKQSIPGIVQRFEKMGIELKEKLSPQRKGDWKDLTLMSLSFAVYVYISQKIV 104
           RK+ + G VQRFEKMGI+LKEKLSPQRKGDWKDLTLMSLSFAVYVYISQKIV
Sbjct: 61  RKEMVHGFVQRFEKMGIQLKEKLSPQRKGDWKDLTLMSLSFAVYVYISQKIV 112

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BLAST of Cp4.1LG02g15720 vs. NCBI nr
Match: KGN58582.1 (hypothetical protein Csa_001602 [Cucumis sativus])

HSP 1 Score: 158 bits (399), Expect = 1.61e-47
Identity = 85/112 (75.89%), Postives = 93/112 (83.04%), Query Frame = 0


Query: 1   MAALYAGHRYFF----GSAAVRFRNRSTSPRSVVLLCLHNQDPSDP---SEEKPKN-GEE 60
           MAAL AGHR+FF    GSA + FRNRS SPRS+ +LCLHNQDPSDP   SEEK K   +E
Sbjct: 1   MAALSAGHRHFFYSQSGSATLLFRNRSISPRSISVLCLHNQDPSDPTDCSEEKTKKKSQE 60

Query: 61  RKQSIPGIVQRFEKMGIELKEKLSPQRKGDWKDLTLMSLSFAVYVYISQKIV 104
           RK+ + G VQRFEKMGI+LKEKLSPQRKGDWKDLTLMSLSFAVYVYISQKIV
Sbjct: 61  RKEMVHGFVQRFEKMGIQLKEKLSPQRKGDWKDLTLMSLSFAVYVYISQKIV 112

[Close]

BLAST of Cp4.1LG02g15720 vs. NCBI nr
Match: KAG6581569.1 (hypothetical protein SDJN03_21571, partial [Cucurbita argyrosperma subsp. sororia] >KAG7018076.1 hypothetical protein SDJN02_19942, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 153 bits (386), Expect = 1.20e-45
Identity = 79/106 (74.53%), Postives = 89/106 (83.96%), Query Frame = 0


Query: 1   MAALYAGHRYFFGSAAVRFRNRSTSPRSVVLLCLHN--QDPSDPSEEKPKNGEERKQSIP 60
           MAAL AGHR+FF   AV+F NRS SPR +VLLC HN  QDPSD SEEK K  +E KQ +P
Sbjct: 1   MAALSAGHRHFF--PAVQFGNRSISPRPIVLLCCHNHNQDPSDSSEEKTKKDQEGKQMVP 60

Query: 61  GIVQRFEKMGIELKEKLSPQRKGDWKDLTLMSLSFAVYVYISQKIV 104
           G +QR++KMG+ELKEKLSPQRKGDWKD+TLMSLSFAVYVYISQKIV
Sbjct: 61  GFIQRYKKMGMELKEKLSPQRKGDWKDVTLMSLSFAVYVYISQKIV 104

[Close]

BLAST of Cp4.1LG02g15720 vs. NCBI nr
Match: XP_022152649.1 (uncharacterized protein LOC111020315 [Momordica charantia])

HSP 1 Score: 144 bits (364), Expect = 2.77e-42
Identity = 78/107 (72.90%), Postives = 88/107 (82.24%), Query Frame = 0


Query: 1   MAALYAGHRYFF--GSAAVRFRNRSTSPRSVVLLCLHNQDPSDPSEEKPKNGEERKQS-I 60
           MAAL AGHR+FF  G+AA + R R +SP+S+VLLC H+QDPS   EE  K GEERKQ  I
Sbjct: 1   MAALSAGHRHFFRRGAAAQQLRTRRSSPKSIVLLCRHSQDPS---EENSKEGEERKQQKI 60

Query: 61  PGIVQRFEKMGIELKEKLSPQRKGDWKDLTLMSLSFAVYVYISQKIV 104
            G V+RFEKMG+ELKEKLSPQRKGDWKD+ LMSLSFAVYVYISQKIV
Sbjct: 61  GGFVERFEKMGMELKEKLSPQRKGDWKDVALMSLSFAVYVYISQKIV 104

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BLAST of Cp4.1LG02g15720 vs. ExPASy TrEMBL
Match: A0A5D3BX35 (Putative RNA/RNP complex-1-interacting phosphatase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1871G00020 PE=4 SV=1)

HSP 1 Score: 160 bits (404), Expect = 1.35e-48
Identity = 83/112 (74.11%), Postives = 93/112 (83.04%), Query Frame = 0


Query: 1   MAALYAGHRYFF----GSAAVRFRNRSTSPRSVVLLCLHNQDPSDPS----EEKPKNGEE 60
           MAAL AGHR+FF    GSA V+FRNRS SPRS+ +LCLHNQDPSDP+    E+  K  +E
Sbjct: 1   MAALSAGHRHFFYSLSGSAIVQFRNRSISPRSIAVLCLHNQDPSDPTDCSDEKTKKKSQE 60

Query: 61  RKQSIPGIVQRFEKMGIELKEKLSPQRKGDWKDLTLMSLSFAVYVYISQKIV 104
           RK+ + G VQRFEKMGI+LKEKLSPQRKGDWKDLTLMSLSFAVYVYISQKIV
Sbjct: 61  RKEMVHGFVQRFEKMGIQLKEKLSPQRKGDWKDLTLMSLSFAVYVYISQKIV 112

[Close]

BLAST of Cp4.1LG02g15720 vs. ExPASy TrEMBL
Match: A0A0A0LD14 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G690300 PE=4 SV=1)

HSP 1 Score: 158 bits (399), Expect = 7.78e-48
Identity = 85/112 (75.89%), Postives = 93/112 (83.04%), Query Frame = 0


Query: 1   MAALYAGHRYFF----GSAAVRFRNRSTSPRSVVLLCLHNQDPSDP---SEEKPKN-GEE 60
           MAAL AGHR+FF    GSA + FRNRS SPRS+ +LCLHNQDPSDP   SEEK K   +E
Sbjct: 1   MAALSAGHRHFFYSQSGSATLLFRNRSISPRSISVLCLHNQDPSDPTDCSEEKTKKKSQE 60

Query: 61  RKQSIPGIVQRFEKMGIELKEKLSPQRKGDWKDLTLMSLSFAVYVYISQKIV 104
           RK+ + G VQRFEKMGI+LKEKLSPQRKGDWKDLTLMSLSFAVYVYISQKIV
Sbjct: 61  RKEMVHGFVQRFEKMGIQLKEKLSPQRKGDWKDLTLMSLSFAVYVYISQKIV 112

[Close]

BLAST of Cp4.1LG02g15720 vs. ExPASy TrEMBL
Match: A0A6J1DGN1 (uncharacterized protein LOC111020315 OS=Momordica charantia OX=3673 GN=LOC111020315 PE=4 SV=1)

HSP 1 Score: 144 bits (364), Expect = 1.34e-42
Identity = 78/107 (72.90%), Postives = 88/107 (82.24%), Query Frame = 0


Query: 1   MAALYAGHRYFF--GSAAVRFRNRSTSPRSVVLLCLHNQDPSDPSEEKPKNGEERKQS-I 60
           MAAL AGHR+FF  G+AA + R R +SP+S+VLLC H+QDPS   EE  K GEERKQ  I
Sbjct: 1   MAALSAGHRHFFRRGAAAQQLRTRRSSPKSIVLLCRHSQDPS---EENSKEGEERKQQKI 60

Query: 61  PGIVQRFEKMGIELKEKLSPQRKGDWKDLTLMSLSFAVYVYISQKIV 104
            G V+RFEKMG+ELKEKLSPQRKGDWKD+ LMSLSFAVYVYISQKIV
Sbjct: 61  GGFVERFEKMGMELKEKLSPQRKGDWKDVALMSLSFAVYVYISQKIV 104

[Close]

BLAST of Cp4.1LG02g15720 vs. ExPASy TrEMBL
Match: A0A6A1VEY0 (Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR6G017560 PE=4 SV=1)

HSP 1 Score: 100 bits (249), Expect = 4.13e-25
Identity = 55/107 (51.40%), Postives = 72/107 (67.29%), Query Frame = 0


Query: 1   MAALYAGHRYFFGSAAVRFRNRSTSPRSVVLLCLHNQDPSDPSEEKPKNGEERKQSIPGI 60
           MAAL  GH  +   + ++   +S+SP++++LLC  N  P+D S  KP+  +E K   P +
Sbjct: 1   MAALSVGHSLYRKHSKIQGPRKSSSPKALILLCCRNDKPTDAS--KPRTTKESKGESPPL 60

Query: 61  VQ---RFEKMGIELKEKLSPQRKGDWKDLTLMSLSFAVYVYISQKIV 104
            +    FEK G  LKE LSPQRKGDWKD+ LMSLSFAVYVYISQ+IV
Sbjct: 61  QRISVGFEKFGKVLKENLSPQRKGDWKDVMLMSLSFAVYVYISQRIV 105

[Close]

BLAST of Cp4.1LG02g15720 vs. ExPASy TrEMBL
Match: A0A6P9E117 (uncharacterized protein LOC118344507 OS=Juglans regia OX=51240 GN=LOC118344507 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 1.15e-24
Identity = 51/104 (49.04%), Postives = 67/104 (64.42%), Query Frame = 0


Query: 1   MAALYAGHRYFFGSAAVRFRNRSTSPRSVVLLCLHNQDPSDPSEEKPKNGEERKQSIPGI 60
           MAAL  GH  +     ++   + +SPR+ +LL   +  P+D S  + K    R+  +PGI
Sbjct: 1   MAALLVGHSLYRRICTIQEPRKKSSPRTFILLGCQSHKPADTSNPRTKKESRRESLLPGI 60

Query: 61  VQRFEKMGIELKEKLSPQRKGDWKDLTLMSLSFAVYVYISQKIV 104
           +  F K G  LKE +SPQ+KGDWKD+ LMSLSFAVYVYISQKIV
Sbjct: 61  LVGFGKFGKVLKENMSPQQKGDWKDVMLMSLSFAVYVYISQKIV 104

[Close]

BLAST of Cp4.1LG02g15720 vs. TAIR 10
Match: AT3G52070.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 23 Blast hits to 23 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 48.1 bits (113), Expect = 4.9e-06
Identity = 31/61 (50.82%), Postives = 41/61 (67.21%), Query Frame = 0


Query: 53  RKQSIP----GIVQRFEKMGI----ELKEKLSPQ-RKGDWKDLTLMSLSFAVYVYISQKI 105
           RKQ +P    G++QR  +  I    ++ + L P+ +KGD KDL LMSLSFAVYVYISQ +
Sbjct: 38  RKQKLPEENEGVIQRTLRRMISEAGKIGKNLKPEKKKGDVKDLMLMSLSFAVYVYISQLL 97

[Close]

BLAST of Cp4.1LG02g15720 vs. TAIR 10
Match: AT3G52070.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 23 Blast hits to 23 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 48.1 bits (113), Expect = 4.9e-06
Identity = 31/61 (50.82%), Postives = 41/61 (67.21%), Query Frame = 0


Query: 53  RKQSIP----GIVQRFEKMGI----ELKEKLSPQ-RKGDWKDLTLMSLSFAVYVYISQKI 105
           RKQ +P    G++QR  +  I    ++ + L P+ +KGD KDL LMSLSFAVYVYISQ +
Sbjct: 38  RKQKLPEENEGVIQRTLRRMISEAGKIGKNLKPEKKKGDVKDLMLMSLSFAVYVYISQLL 97

The following BLAST results are available for this feature:

BLAST of Cp4.1LG02g15720 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG02g15720 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6606884.1	7.23e-59	88.79	hypothetical protein SDJN03_00226, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAA0048367.1	2.78e-48	74.11	putative RNA/RNP complex-1-interacting phosphatase [Cucumis melo var. makuwa] >T...	[more]
KGN58582.1	1.61e-47	75.89	hypothetical protein Csa_001602 [Cucumis sativus]	[more]
KAG6581569.1	1.20e-45	74.53	hypothetical protein SDJN03_21571, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022152649.1	2.77e-42	72.90	uncharacterized protein LOC111020315 [Momordica charantia]	[more]

BLAST of Cp4.1LG02g15720 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BX35	1.35e-48	74.11	Putative RNA/RNP complex-1-interacting phosphatase OS=Cucumis melo var. makuwa O...	[more]
A0A0A0LD14	7.78e-48	75.89	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G690300 PE=4 SV=1	[more]
A0A6J1DGN1	1.34e-42	72.90	uncharacterized protein LOC111020315 OS=Momordica charantia OX=3673 GN=LOC111020...	[more]
A0A6A1VEY0	4.13e-25	51.40	Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR6G017560 PE=4 SV=1	[more]
A0A6P9E117	1.15e-24	49.04	uncharacterized protein LOC118344507 OS=Juglans regia OX=51240 GN=LOC118344507 P...	[more]

BLAST of Cp4.1LG02g15720 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G52070.1	4.9e-06	50.82	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT3G52070.2	4.9e-06	50.82	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 39..53
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 35..57

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG02g15720.1	Cp4.1LG02g15720.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane