Cp4.1LG01g23740 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG01g23740
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	transcription initiation factor TFIID subunit 7
Location	Cp4.1LG01: 19448008 .. 19450399 (-)
RNA-Seq Expression	Cp4.1LG01g23740
Synteny	Cp4.1LG01g23740

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TAAGATGGAATTTTCTGGATTTTCAGTATCTCTCGACTCTTTCCCCCCGCGCTATCGGTACCCCTCGATTTCTCTCTTTCACAGCTATCCCCTCGATTTCTCCCTCGCCGGCGGCGGCAACCGTCAATTGTGGGGGACGGCTTTTGTATCCTTGATTTTGTACAAGGGCTGTTAAAAGCTCATAGCACAGGATACAAAAAACCTGACACCAACGCACCCTTCAAGAATACAAGGTAATCCAAGATTATGTTTTCAAATTGAATCAACCAGATGAATTGAACCAATTTTCGTTTGGAAGCCCATTTCTTTCCAGATTTGATTACCCAAAAGGCACTATTTCTAGAACCCTATTTCTTTTTCATTGCCGAATGATGATTTTGTTTATCAACCTTACAAAGAATAAAAATGGTTTTCGTTTACGATGGTTGATCTTCTTTGTGCAGCAGTTTTATTGATTTTGACTCTGAATTCATGGAGGAGCAATTTGTACTGAGGGTTCCACCTTCTGTTGCTGAACGAATTGAACGTCTACTGAATGAAAATGCTTCTTCATCTGAAGATCCTTCATTGGATTTGTCTTTCTCTGGTAAAACAAACTTATGCACTCATCTTCTGGTTCAATCTCCCTGTTCTATGCTTTTTTCATTGCATTTGCTGTGATGTTGGATGAATAGATTAACTTCTAGACTTTTGGACTGATTAGCATTGGAAATAGATCAAACTGTGCAGTATGGTTTTATCTTAATTTTGAGGGTTGGCCTAATTGCCTATTTATGGCCTCCTAAATTGTCACACAGAGGATGGGAGAAGTGGCACTTTTGCCATTGGTGACGACCATTTTCCAGCATCACTTCTGGATCTCCCTTGTGTAGTGGAATCATATAAAACATACGATGATACTGTGCTAATCAAAGCTGCAGACATTGCCCAGGTAAAATTGTATCAAAATCGTTAGTCTATACATTTCAGGTGATATGATCTGGCTGTTTCTTAGATTTTATGGGATGCTATCATTTTAACAGATGATTATGGTCAGAGAACCAGGCGACCCTGCGCCAGATTCAACCGAGTATAGACATGGTCTGACCCCTCCTATGAGGGATGCTCGAAAACGTAGATTTCGAAGAGAGCCGGATTTAAATGTATGCCATTCTTATCCGTCTTACTATTAGCTTGATAGTAAACTGGTGTACGACATGATAATCCATTTAGATTCCTACTTGTACAAGGAGTAGGTAGTTGAGGACAAATTATTGGATGAATATAGTTTATGCTTGGCGTGTATGTCTCTCTCATATATAAATTCTAAATTAACAATGATCTCTTAAATCTGTAGGGCAATAGTGATATCTTAAGCGTTTTCATTATACGTGACATATCTTCTCAACAAGAGAATCAGTTCTTTATTTTCTTTTGTTCTCATATCAAAATTTGTTGCATTTAGAAAGTGCCTTTTGATTGTTACATACTGATTCTTTCTCTCTTCTTTTTGGCAGCCTGAGCTTGTACGACGGGTGGAGAAAGATCTACTAAACATCATGGCAGGAGGAACTACCGAAAATGCAGATATCCTTGATAATTTATGTGTTTGAAACTCGTTACCATATTAGTTTATGAAACATGTACCCATCCTGTTACCGTCCAAGTCTATCACTAGCAGATATTGTCTTTTTTGGTCTTCCCTTCAAGATTTTAAAACGTGTCTGCTAGGGAGAGGTTTCCACCTCCTTATAAAGAATGTTTTGTTCTCCTCCTCAACCGATGTGAGATCTCTCAATCCAACCCCTTTGGGGTCCAGCGTCCTTGCTGGCATATCGTCTCGTGTCCACCACCCTTCAGGGCTCAGCCTCCTCACTGACACATCGCCCGGTGTTTGTCTCTGATACCATTTGTAACAGCCCAAGTCCACCATTAACAAATATTGTTTTCTTTGGATTTTCTCTCACGGTTTTAAAACGTGTCTACTAGGGAGAGGTTTCCACACCCTTATAAAGATTGTTTCATTCTCCTCCCCAACCGATGTGGGATCCCACGCATCCCCGCTTGATAAACATTGTTTACATCTCAAAACTGTGGCGGACTGAGACTTATTTTAATTAGCACTCATGAAATTCTTGATTGAAGGGAACTGACAATATGCCTTTTTGCTCCTCTTCTTCTGACATAAAGTTATGATCTTATGCTACAATAATTTTAACTTTAGAGGTTCCTTAACTGAGCATTCTCACATGTTGGAGTGGCTGAACATCAAGATGATAGACACGAGAATTCTCATCATGCAAGTGCAAAGCCTGCATCCACCCCTGCAGCGAAGCCTGATGTGATGGAAACTGAGACAACTGTTGGGGAGCCTGAAAGGAGCGACTCTGATGACTCTGATCATTCAATTGAT

mRNA sequence

TAAGATGGAATTTTCTGGATTTTCAGTATCTCTCGACTCTTTCCCCCCGCGCTATCGGTACCCCTCGATTTCTCTCTTTCACAGCTATCCCCTCGATTTCTCCCTCGCCGGCGGCGGCAACCGTCAATTGTGGGGGACGGCTTTTGTATCCTTGATTTTGTACAAGGGCTGTTAAAAGCTCATAGCACAGGATACAAAAAACCTGACACCAACGCACCCTTCAAGAATACAAGCAGTTTTATTGATTTTGACTCTGAATTCATGGAGGAGCAATTTGTACTGAGGGTTCCACCTTCTGTTGCTGAACGAATTGAACGTCTACTGAATGAAAATGCTTCTTCATCTGAAGATCCTTCATTGGATTTGTCTTTCTCTGAGGATGGGAGAAGTGGCACTTTTGCCATTGGTGACGACCATTTTCCAGCATCACTTCTGGATCTCCCTTGTGTAGTGGAATCATATAAAACATACGATGATACTGTGCTAATCAAAGCTGCAGACATTGCCCAGATGATTATGGTCAGAGAACCAGGCGACCCTGCGCCAGATTCAACCGAGTATAGACATGGTCTGACCCCTCCTATGAGGGATGCTCGAAAACTGGCTGAACATCAAGATGATAGACACGAGAATTCTCATCATGCAAGTGCAAAGCCTGCATCCACCCCTGCAGCGAAGCCTGATGTGATGGAAACTGAGACAACTGTTGGGGAGCCTGAAAGGAGCGACTCTGATGACTCTGATCATTCAATTGAT

Coding sequence (CDS)

ATGGAGGAGCAATTTGTACTGAGGGTTCCACCTTCTGTTGCTGAACGAATTGAACGTCTACTGAATGAAAATGCTTCTTCATCTGAAGATCCTTCATTGGATTTGTCTTTCTCTGAGGATGGGAGAAGTGGCACTTTTGCCATTGGTGACGACCATTTTCCAGCATCACTTCTGGATCTCCCTTGTGTAGTGGAATCATATAAAACATACGATGATACTGTGCTAATCAAAGCTGCAGACATTGCCCAGATGATTATGGTCAGAGAACCAGGCGACCCTGCGCCAGATTCAACCGAGTATAGACATGGTCTGACCCCTCCTATGAGGGATGCTCGAAAACTGGCTGAACATCAAGATGATAGACACGAGAATTCTCATCATGCAAGTGCAAAGCCTGCATCCACCCCTGCAGCGAAGCCTGATGTGATGGAAACTGAGACAACTGTTGGGGAGCCTGAAAGGAGCGACTCTGATGACTCTGATCATTCAATTGAT

Protein sequence

MEEQFVLRVPPSVAERIERLLNENASSSEDPSLDLSFSEDGRSGTFAIGDDHFPASLLDLPCVVESYKTYDDTVLIKAADIAQMIMVREPGDPAPDSTEYRHGLTPPMRDARKLAEHQDDRHENSHHASAKPASTPAAKPDVMETETTVGEPERSDSDDSDHSID

Homology

[Close]

BLAST of Cp4.1LG01g23740 vs. ExPASy Swiss-Prot
Match: B9DG24 (Transcription initiation factor TFIID subunit 7 OS=Arabidopsis thaliana OX=3702 GN=TAF7 PE=1 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 8.2e-45
Identity = 87/113 (76.99%), Postives = 102/113 (90.27%), Query Frame = 0


Query: 1   MEEQFVLRVPPSVAERIERLLNENASSSEDPSLDLSFSEDGRSGTFAIGDDHFPASLLDL 60
           MEEQF+LRVPPSV+ERI+RLL+E+AS+S++  LDL FSEDGR+GTF IG+D FPASLLDL
Sbjct: 1   MEEQFILRVPPSVSERIDRLLSEDASTSDEIPLDLFFSEDGRNGTFMIGNDEFPASLLDL 60

Query: 61  PCVVESYKTYDDTVLIKAADIAQMIMVREPGDPAPDSTEYRHGLTPPMRDARK 114
           P VVES+KTYDD  L+K ADI QMIMVREPGDPAP++ EYRHGLTPPM+DARK
Sbjct: 61  PAVVESFKTYDDCALVKTADIGQMIMVREPGDPAPNTVEYRHGLTPPMKDARK 113

[Close]

BLAST of Cp4.1LG01g23740 vs. ExPASy Swiss-Prot
Match: Q9D3R9 (Transcription initiation factor TFIID subunit 7-like OS=Mus musculus OX=10090 GN=Taf7l PE=1 SV=2)

HSP 1 Score: 75.5 bits (184), Expect = 6.4e-13
Identity = 41/136 (30.15%), Postives = 69/136 (50.74%), Query Frame = 0


Query: 1   MEEQFVLRVPPSVAERIERLLNENASSSEDPSLDLSFSEDGRSGTFAIGDDHFPASLLDL 60
           +EEQF+LR+PP  A  + ++++   ++ +D  L + FS DG      + +   PA L++L
Sbjct: 106 VEEQFILRLPPEQAYAVRKIIHSRNAAWKD-KLKIDFSPDGHHAVVQVDNVSLPAKLVNL 165

Query: 61  PCVVESYKTYDDTVLIKAADIAQMIMVREPGDPAPDSTE--------------------- 114
           PCV+ S KT D     K AD++QM++    G+P     E                     
Sbjct: 166 PCVIGSLKTIDRKTFYKTADVSQMLVCSPEGEPHSPPEEPVVSTGPTVIGISEGKAERKK 225

[Close]

BLAST of Cp4.1LG01g23740 vs. ExPASy Swiss-Prot
Match: Q9R1C0 (Transcription initiation factor TFIID subunit 7 OS=Mus musculus OX=10090 GN=Taf7 PE=1 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 6.0e-11
Identity = 43/135 (31.85%), Postives = 61/135 (45.19%), Query Frame = 0


Query: 1   MEEQFVLRVPPSVAERIERLLNENASSSEDPSLDLSFSEDGRSGTFAIGDDHFPASLLDL 60
           +E QF+LR+PP  A  + R +     + +D  L +    DGR G   +      A L+DL
Sbjct: 12  LESQFILRLPPEYAATVRRAVQSGHVNLKD-KLSIELHPDGRHGIVRVDRVPLAAKLVDL 71

Query: 61  PCVVESYKTYDDTVLIKAADIAQMIMVREPGDPAPDSTE--------------------- 114
           PCV ES KT D     K ADI+QM++    GD  P   E                     
Sbjct: 72  PCVTESLKTIDKKTFYKTADISQMLVATVDGDLYPPVEEAAATADPKANKKKDKDKEKKF 131

[Close]

BLAST of Cp4.1LG01g23740 vs. ExPASy Swiss-Prot
Match: Q6R1L1 (Transcription initiation factor TFIID subunit 7 OS=Cricetulus griseus OX=10029 GN=TAF7 PE=1 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.3e-10
Identity = 45/135 (33.33%), Postives = 66/135 (48.89%), Query Frame = 0


Query: 1   MEEQFVLRVPPSVAERIERLLNENASSSEDPSLDLSFSEDGRSGTFAIGDDHFPASLLDL 60
           +E QF+LR+PP  A  + R +     + +D  L +    DGR G   +      A L+DL
Sbjct: 12  LESQFILRLPPEYASTVRRAVQSGHVNLKD-RLTIELHPDGRHGIVRVDRVPLAAKLVDL 71

Query: 61  PCVVESYKTYDDTVLIKAADIAQMIM----------VREPGDPA-PDSTE---------- 114
           PCV+ES KT D     K ADI QM++          V EP  PA P +++          
Sbjct: 72  PCVMESLKTIDKKTFYKTADICQMLVSTVDGDLYPPVEEPVAPADPKASKKKDKDKEKKF 131

[Close]

BLAST of Cp4.1LG01g23740 vs. ExPASy Swiss-Prot
Match: Q15545 (Transcription initiation factor TFIID subunit 7 OS=Homo sapiens OX=9606 GN=TAF7 PE=1 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 3.0e-10
Identity = 42/135 (31.11%), Postives = 61/135 (45.19%), Query Frame = 0


Query: 1   MEEQFVLRVPPSVAERIERLLNENASSSEDPSLDLSFSEDGRSGTFAIGDDHFPASLLDL 60
           +E QF+LR+PP  A  + R +     + +D  L +    DGR G   +      + L+DL
Sbjct: 12  LESQFILRLPPEYASTVRRAVQSGHVNLKD-RLTIELHPDGRHGIVRVDRVPLASKLVDL 71

Query: 61  PCVVESYKTYDDTVLIKAADIAQMIMVREPGDPAPDSTE--------------------- 114
           PCV+ES KT D     K ADI QM++    GD  P   E                     
Sbjct: 72  PCVMESLKTIDKKTFYKTADICQMLVSTVDGDLYPPVEEPVASTDPKASKKKDKDKEKKF 131

[Close]

BLAST of Cp4.1LG01g23740 vs. NCBI nr
Match: XP_023516679.1 (transcription initiation factor TFIID subunit 7 [Cucurbita pepo subsp. pepo] >XP_023516685.1 transcription initiation factor TFIID subunit 7 [Cucurbita pepo subsp. pepo] >XP_023516692.1 transcription initiation factor TFIID subunit 7 [Cucurbita pepo subsp. pepo] >XP_023516700.1 transcription initiation factor TFIID subunit 7 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 305 bits (780), Expect = 2.06e-103
Identity = 164/201 (81.59%), Postives = 165/201 (82.09%), Query Frame = 0


Query: 1   MEEQFVLRVPPSVAERIERLLNENASSSEDPSLDLSFSEDGRSGTFAIGDDHFPASLLDL 60
           MEEQFVLRVPPSVAERIERLLNENASSSEDPSLDLSFSEDGRSGTFAIGDDHFPASLLDL
Sbjct: 1   MEEQFVLRVPPSVAERIERLLNENASSSEDPSLDLSFSEDGRSGTFAIGDDHFPASLLDL 60

Query: 61  PCVVESYKTYDDTVLIKAADIAQMIMVREPGDPAPDSTEYRHGLTPPMRDARK------- 120
           PCVVESYKTYDDTVLIKAADIAQMIMVREPGDPAPDSTEYRHGLTPPMRDARK       
Sbjct: 61  PCVVESYKTYDDTVLIKAADIAQMIMVREPGDPAPDSTEYRHGLTPPMRDARKRRFRREP 120

Query: 121 -----------------------------LAEHQDDRHENSHHASAKPASTPAAKPDVME 165
                                        +AEHQDDRHENSHHASAKPASTPAAKPDVME
Sbjct: 121 DLNPELVRRVEKDLLNIMAGGTTENADVGVAEHQDDRHENSHHASAKPASTPAAKPDVME 180

[Close]

BLAST of Cp4.1LG01g23740 vs. NCBI nr
Match: XP_022990129.1 (transcription initiation factor TFIID subunit 7 isoform X3 [Cucurbita maxima] >XP_022990130.1 transcription initiation factor TFIID subunit 7 isoform X3 [Cucurbita maxima])

HSP 1 Score: 303 bits (777), Expect = 5.90e-103
Identity = 163/201 (81.09%), Postives = 165/201 (82.09%), Query Frame = 0


Query: 1   MEEQFVLRVPPSVAERIERLLNENASSSEDPSLDLSFSEDGRSGTFAIGDDHFPASLLDL 60
           MEEQFVLRVPPSVAERIERLLNENASSSEDPSLDLSFSEDGRSGTFAIGDDHFPASLLDL
Sbjct: 1   MEEQFVLRVPPSVAERIERLLNENASSSEDPSLDLSFSEDGRSGTFAIGDDHFPASLLDL 60

Query: 61  PCVVESYKTYDDTVLIKAADIAQMIMVREPGDPAPDSTEYRHGLTPPMRDARK------- 120
           PCVVESYKTYDDTVLIKAADIAQMIMVREPGDPAPDSTEYRHGLTPPMRDARK       
Sbjct: 61  PCVVESYKTYDDTVLIKAADIAQMIMVREPGDPAPDSTEYRHGLTPPMRDARKRRFRREP 120

Query: 121 -----------------------------LAEHQDDRHENSHHASAKPASTPAAKPDVME 165
                                        +AEHQDD+HENSHHASAKPASTPAAKPDVME
Sbjct: 121 DLNPELVRRVEKDLLNIMAGGTTENADVGVAEHQDDKHENSHHASAKPASTPAAKPDVME 180

[Close]

BLAST of Cp4.1LG01g23740 vs. NCBI nr
Match: XP_022960612.1 (transcription initiation factor TFIID subunit 7 [Cucurbita moschata] >XP_022960616.1 transcription initiation factor TFIID subunit 7 [Cucurbita moschata] >XP_022960625.1 transcription initiation factor TFIID subunit 7 [Cucurbita moschata] >XP_022960633.1 transcription initiation factor TFIID subunit 7 [Cucurbita moschata] >KAG7033060.1 Transcription initiation factor TFIID subunit 7 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 303 bits (777), Expect = 5.90e-103
Identity = 163/201 (81.09%), Postives = 165/201 (82.09%), Query Frame = 0


Query: 1   MEEQFVLRVPPSVAERIERLLNENASSSEDPSLDLSFSEDGRSGTFAIGDDHFPASLLDL 60
           MEEQFVLRVPPSVAERIERLLNENASSSEDPSLDLSFSEDGRSGTFAIGDDHFPASLLDL
Sbjct: 1   MEEQFVLRVPPSVAERIERLLNENASSSEDPSLDLSFSEDGRSGTFAIGDDHFPASLLDL 60

Query: 61  PCVVESYKTYDDTVLIKAADIAQMIMVREPGDPAPDSTEYRHGLTPPMRDARK------- 120
           PCVVESYKTYDDTVLIKAADIAQMIMVR+PGDPAPDSTEYRHGLTPPMRDARK       
Sbjct: 61  PCVVESYKTYDDTVLIKAADIAQMIMVRDPGDPAPDSTEYRHGLTPPMRDARKRRFRREP 120

Query: 121 -----------------------------LAEHQDDRHENSHHASAKPASTPAAKPDVME 165
                                        +AEHQDDRHENSHHASAKPASTPAAKPDVME
Sbjct: 121 DLNPELVRRVEKDLLNIMAGGTTENADVGVAEHQDDRHENSHHASAKPASTPAAKPDVME 180

[Close]

BLAST of Cp4.1LG01g23740 vs. NCBI nr
Match: XP_022990128.1 (transcription initiation factor TFIID subunit 7 isoform X2 [Cucurbita maxima])

HSP 1 Score: 303 bits (777), Expect = 1.00e-101
Identity = 163/201 (81.09%), Postives = 165/201 (82.09%), Query Frame = 0


Query: 1   MEEQFVLRVPPSVAERIERLLNENASSSEDPSLDLSFSEDGRSGTFAIGDDHFPASLLDL 60
           MEEQFVLRVPPSVAERIERLLNENASSSEDPSLDLSFSEDGRSGTFAIGDDHFPASLLDL
Sbjct: 84  MEEQFVLRVPPSVAERIERLLNENASSSEDPSLDLSFSEDGRSGTFAIGDDHFPASLLDL 143

Query: 61  PCVVESYKTYDDTVLIKAADIAQMIMVREPGDPAPDSTEYRHGLTPPMRDARK------- 120
           PCVVESYKTYDDTVLIKAADIAQMIMVREPGDPAPDSTEYRHGLTPPMRDARK       
Sbjct: 144 PCVVESYKTYDDTVLIKAADIAQMIMVREPGDPAPDSTEYRHGLTPPMRDARKRRFRREP 203

Query: 121 -----------------------------LAEHQDDRHENSHHASAKPASTPAAKPDVME 165
                                        +AEHQDD+HENSHHASAKPASTPAAKPDVME
Sbjct: 204 DLNPELVRRVEKDLLNIMAGGTTENADVGVAEHQDDKHENSHHASAKPASTPAAKPDVME 263

[Close]

BLAST of Cp4.1LG01g23740 vs. NCBI nr
Match: XP_022990127.1 (transcription initiation factor TFIID subunit 7 isoform X1 [Cucurbita maxima])

HSP 1 Score: 303 bits (777), Expect = 1.04e-101
Identity = 163/201 (81.09%), Postives = 165/201 (82.09%), Query Frame = 0


Query: 1   MEEQFVLRVPPSVAERIERLLNENASSSEDPSLDLSFSEDGRSGTFAIGDDHFPASLLDL 60
           MEEQFVLRVPPSVAERIERLLNENASSSEDPSLDLSFSEDGRSGTFAIGDDHFPASLLDL
Sbjct: 85  MEEQFVLRVPPSVAERIERLLNENASSSEDPSLDLSFSEDGRSGTFAIGDDHFPASLLDL 144

Query: 61  PCVVESYKTYDDTVLIKAADIAQMIMVREPGDPAPDSTEYRHGLTPPMRDARK------- 120
           PCVVESYKTYDDTVLIKAADIAQMIMVREPGDPAPDSTEYRHGLTPPMRDARK       
Sbjct: 145 PCVVESYKTYDDTVLIKAADIAQMIMVREPGDPAPDSTEYRHGLTPPMRDARKRRFRREP 204

Query: 121 -----------------------------LAEHQDDRHENSHHASAKPASTPAAKPDVME 165
                                        +AEHQDD+HENSHHASAKPASTPAAKPDVME
Sbjct: 205 DLNPELVRRVEKDLLNIMAGGTTENADVGVAEHQDDKHENSHHASAKPASTPAAKPDVME 264

[Close]

BLAST of Cp4.1LG01g23740 vs. ExPASy TrEMBL
Match: A0A6J1JR83 (transcription initiation factor TFIID subunit 7 isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111487113 PE=3 SV=1)

HSP 1 Score: 303 bits (777), Expect = 2.86e-103
Identity = 163/201 (81.09%), Postives = 165/201 (82.09%), Query Frame = 0


Query: 1   MEEQFVLRVPPSVAERIERLLNENASSSEDPSLDLSFSEDGRSGTFAIGDDHFPASLLDL 60
           MEEQFVLRVPPSVAERIERLLNENASSSEDPSLDLSFSEDGRSGTFAIGDDHFPASLLDL
Sbjct: 1   MEEQFVLRVPPSVAERIERLLNENASSSEDPSLDLSFSEDGRSGTFAIGDDHFPASLLDL 60

Query: 61  PCVVESYKTYDDTVLIKAADIAQMIMVREPGDPAPDSTEYRHGLTPPMRDARK------- 120
           PCVVESYKTYDDTVLIKAADIAQMIMVREPGDPAPDSTEYRHGLTPPMRDARK       
Sbjct: 61  PCVVESYKTYDDTVLIKAADIAQMIMVREPGDPAPDSTEYRHGLTPPMRDARKRRFRREP 120

Query: 121 -----------------------------LAEHQDDRHENSHHASAKPASTPAAKPDVME 165
                                        +AEHQDD+HENSHHASAKPASTPAAKPDVME
Sbjct: 121 DLNPELVRRVEKDLLNIMAGGTTENADVGVAEHQDDKHENSHHASAKPASTPAAKPDVME 180

[Close]

BLAST of Cp4.1LG01g23740 vs. ExPASy TrEMBL
Match: A0A6J1H9I8 (transcription initiation factor TFIID subunit 7 OS=Cucurbita moschata OX=3662 GN=LOC111461346 PE=3 SV=1)

HSP 1 Score: 303 bits (777), Expect = 2.86e-103
Identity = 163/201 (81.09%), Postives = 165/201 (82.09%), Query Frame = 0


Query: 1   MEEQFVLRVPPSVAERIERLLNENASSSEDPSLDLSFSEDGRSGTFAIGDDHFPASLLDL 60
           MEEQFVLRVPPSVAERIERLLNENASSSEDPSLDLSFSEDGRSGTFAIGDDHFPASLLDL
Sbjct: 1   MEEQFVLRVPPSVAERIERLLNENASSSEDPSLDLSFSEDGRSGTFAIGDDHFPASLLDL 60

Query: 61  PCVVESYKTYDDTVLIKAADIAQMIMVREPGDPAPDSTEYRHGLTPPMRDARK------- 120
           PCVVESYKTYDDTVLIKAADIAQMIMVR+PGDPAPDSTEYRHGLTPPMRDARK       
Sbjct: 61  PCVVESYKTYDDTVLIKAADIAQMIMVRDPGDPAPDSTEYRHGLTPPMRDARKRRFRREP 120

Query: 121 -----------------------------LAEHQDDRHENSHHASAKPASTPAAKPDVME 165
                                        +AEHQDDRHENSHHASAKPASTPAAKPDVME
Sbjct: 121 DLNPELVRRVEKDLLNIMAGGTTENADVGVAEHQDDRHENSHHASAKPASTPAAKPDVME 180

[Close]

BLAST of Cp4.1LG01g23740 vs. ExPASy TrEMBL
Match: A0A6J1JSC8 (transcription initiation factor TFIID subunit 7 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111487113 PE=3 SV=1)

HSP 1 Score: 303 bits (777), Expect = 4.86e-102
Identity = 163/201 (81.09%), Postives = 165/201 (82.09%), Query Frame = 0


Query: 1   MEEQFVLRVPPSVAERIERLLNENASSSEDPSLDLSFSEDGRSGTFAIGDDHFPASLLDL 60
           MEEQFVLRVPPSVAERIERLLNENASSSEDPSLDLSFSEDGRSGTFAIGDDHFPASLLDL
Sbjct: 84  MEEQFVLRVPPSVAERIERLLNENASSSEDPSLDLSFSEDGRSGTFAIGDDHFPASLLDL 143

Query: 61  PCVVESYKTYDDTVLIKAADIAQMIMVREPGDPAPDSTEYRHGLTPPMRDARK------- 120
           PCVVESYKTYDDTVLIKAADIAQMIMVREPGDPAPDSTEYRHGLTPPMRDARK       
Sbjct: 144 PCVVESYKTYDDTVLIKAADIAQMIMVREPGDPAPDSTEYRHGLTPPMRDARKRRFRREP 203

Query: 121 -----------------------------LAEHQDDRHENSHHASAKPASTPAAKPDVME 165
                                        +AEHQDD+HENSHHASAKPASTPAAKPDVME
Sbjct: 204 DLNPELVRRVEKDLLNIMAGGTTENADVGVAEHQDDKHENSHHASAKPASTPAAKPDVME 263

[Close]

BLAST of Cp4.1LG01g23740 vs. ExPASy TrEMBL
Match: A0A6J1JHS5 (transcription initiation factor TFIID subunit 7 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111487113 PE=3 SV=1)

HSP 1 Score: 303 bits (777), Expect = 5.02e-102
Identity = 163/201 (81.09%), Postives = 165/201 (82.09%), Query Frame = 0


Query: 1   MEEQFVLRVPPSVAERIERLLNENASSSEDPSLDLSFSEDGRSGTFAIGDDHFPASLLDL 60
           MEEQFVLRVPPSVAERIERLLNENASSSEDPSLDLSFSEDGRSGTFAIGDDHFPASLLDL
Sbjct: 85  MEEQFVLRVPPSVAERIERLLNENASSSEDPSLDLSFSEDGRSGTFAIGDDHFPASLLDL 144

Query: 61  PCVVESYKTYDDTVLIKAADIAQMIMVREPGDPAPDSTEYRHGLTPPMRDARK------- 120
           PCVVESYKTYDDTVLIKAADIAQMIMVREPGDPAPDSTEYRHGLTPPMRDARK       
Sbjct: 145 PCVVESYKTYDDTVLIKAADIAQMIMVREPGDPAPDSTEYRHGLTPPMRDARKRRFRREP 204

Query: 121 -----------------------------LAEHQDDRHENSHHASAKPASTPAAKPDVME 165
                                        +AEHQDD+HENSHHASAKPASTPAAKPDVME
Sbjct: 205 DLNPELVRRVEKDLLNIMAGGTTENADVGVAEHQDDKHENSHHASAKPASTPAAKPDVME 264

[Close]

BLAST of Cp4.1LG01g23740 vs. ExPASy TrEMBL
Match: A0A5A7T655 (Transcription initiation factor TFIID subunit 7 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold311G00200 PE=3 SV=1)

HSP 1 Score: 288 bits (736), Expect = 1.74e-97
Identity = 151/170 (88.82%), Postives = 153/170 (90.00%), Query Frame = 0


Query: 1   MEEQFVLRVPPSVAERIERLLNENASSSEDPSLDLSFSEDGRSGTFAIGDDHFPASLLDL 60
           MEEQFVLRVPPSVAERIERLLNENASSSED SLDLSFSEDGRSGTFAIGDDHFPASLLDL
Sbjct: 1   MEEQFVLRVPPSVAERIERLLNENASSSEDASLDLSFSEDGRSGTFAIGDDHFPASLLDL 60

Query: 61  PCVVESYKTYDDTVLIKAADIAQMIMVREPGDPAPDSTEYRHGLTPPMRDARKLA----- 120
           PCVVESYKTYDDTVLIKAADI QMIMVREPGDPAPDSTEYRHGLTPPMRDARK       
Sbjct: 61  PCVVESYKTYDDTVLIKAADIGQMIMVREPGDPAPDSTEYRHGLTPPMRDARKRRFRREP 120

Query: 121 EHQDDRHENSHHASAKPASTPAAKPDVMETETTVGEPERSDSDDSDHSID 165
           +  DDR EN HH +AKPAS PA KPDVMETET VGEPERSDSDDSDHSID
Sbjct: 121 DLNDDRDENPHHTNAKPASAPAPKPDVMETETNVGEPERSDSDDSDHSID 170

[Close]

BLAST of Cp4.1LG01g23740 vs. TAIR 10
Match: AT1G55300.1 (TBP-associated factor 7 )

HSP 1 Score: 189.1 bits (479), Expect = 2.8e-48
Identity = 111/203 (54.68%), Postives = 136/203 (67.00%), Query Frame = 0


Query: 1   MEEQFVLRVPPSVAERIERLLNENASSSEDPSLDLSFSEDGRSGTFAIGDDHFPASLLDL 60
           MEEQF+LRVPPSV+ERI+RLL+E+AS+S++  LDL FSEDGR+GTF IG+D FPASLLDL
Sbjct: 1   MEEQFILRVPPSVSERIDRLLSEDASTSDEIPLDLFFSEDGRNGTFMIGNDEFPASLLDL 60

Query: 61  PCVVESYKTYDDTVLIKAADIAQMIMVREPGDPAPDSTEYRHGLTPPMRDARKL------ 120
           P VVES+KTYDD  L+K ADI QMIMVREPGDPAP++ EYRHGLTPPM+DARK       
Sbjct: 61  PAVVESFKTYDDCALVKTADIGQMIMVREPGDPAPNTVEYRHGLTPPMKDARKRRFRREP 120

Query: 121 ---------------------------AEHQDDRHENSHHASAKPAS---TPAAKPDVME 165
                                       + +   +EN+ +AS K +S   TP  KP+  E
Sbjct: 121 DLNPELVQRVERDLLNILSGGTVENVHEQEEPATNENASNASKKVSSSSPTPVEKPEAPE 180

[Close]

BLAST of Cp4.1LG01g23740 vs. TAIR 10
Match: AT1G55300.2 (TBP-associated factor 7 )

HSP 1 Score: 181.4 bits (459), Expect = 5.8e-46
Identity = 87/113 (76.99%), Postives = 102/113 (90.27%), Query Frame = 0


Query: 1   MEEQFVLRVPPSVAERIERLLNENASSSEDPSLDLSFSEDGRSGTFAIGDDHFPASLLDL 60
           MEEQF+LRVPPSV+ERI+RLL+E+AS+S++  LDL FSEDGR+GTF IG+D FPASLLDL
Sbjct: 1   MEEQFILRVPPSVSERIDRLLSEDASTSDEIPLDLFFSEDGRNGTFMIGNDEFPASLLDL 60

Query: 61  PCVVESYKTYDDTVLIKAADIAQMIMVREPGDPAPDSTEYRHGLTPPMRDARK 114
           P VVES+KTYDD  L+K ADI QMIMVREPGDPAP++ EYRHGLTPPM+DARK
Sbjct: 61  PAVVESFKTYDDCALVKTADIGQMIMVREPGDPAPNTVEYRHGLTPPMKDARK 113

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g23740 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
B9DG24	8.2e-45	76.99	Transcription initiation factor TFIID subunit 7 OS=Arabidopsis thaliana OX=3702 ...	[more]
Q9D3R9	6.4e-13	30.15	Transcription initiation factor TFIID subunit 7-like OS=Mus musculus OX=10090 GN...	[more]
Q9R1C0	6.0e-11	31.85	Transcription initiation factor TFIID subunit 7 OS=Mus musculus OX=10090 GN=Taf7...	[more]
Q6R1L1	1.3e-10	33.33	Transcription initiation factor TFIID subunit 7 OS=Cricetulus griseus OX=10029 G...	[more]
Q15545	3.0e-10	31.11	Transcription initiation factor TFIID subunit 7 OS=Homo sapiens OX=9606 GN=TAF7 ...	[more]

BLAST of Cp4.1LG01g23740 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023516679.1	2.06e-103	81.59	transcription initiation factor TFIID subunit 7 [Cucurbita pepo subsp. pepo] >XP...	[more]
XP_022990129.1	5.90e-103	81.09	transcription initiation factor TFIID subunit 7 isoform X3 [Cucurbita maxima] >X...	[more]
XP_022960612.1	5.90e-103	81.09	transcription initiation factor TFIID subunit 7 [Cucurbita moschata] >XP_0229606...	[more]
XP_022990128.1	1.00e-101	81.09	transcription initiation factor TFIID subunit 7 isoform X2 [Cucurbita maxima]	[more]
XP_022990127.1	1.04e-101	81.09	transcription initiation factor TFIID subunit 7 isoform X1 [Cucurbita maxima]	[more]

BLAST of Cp4.1LG01g23740 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JR83	2.86e-103	81.09	transcription initiation factor TFIID subunit 7 isoform X3 OS=Cucurbita maxima O...	[more]
A0A6J1H9I8	2.86e-103	81.09	transcription initiation factor TFIID subunit 7 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1JSC8	4.86e-102	81.09	transcription initiation factor TFIID subunit 7 isoform X2 OS=Cucurbita maxima O...	[more]
A0A6J1JHS5	5.02e-102	81.09	transcription initiation factor TFIID subunit 7 isoform X1 OS=Cucurbita maxima O...	[more]
A0A5A7T655	1.74e-97	88.82	Transcription initiation factor TFIID subunit 7 OS=Cucumis melo var. makuwa OX=1...	[more]

BLAST of Cp4.1LG01g23740 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G55300.1	2.8e-48	54.68	TBP-associated factor 7	[more]
AT1G55300.2	5.8e-46	76.99	TBP-associated factor 7	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006751	TAFII55 protein, conserved region	SMART	SM01370	TAFII55_N_2	coord: 1..160 e-value: 5.8E-40 score: 148.7
IPR006751	TAFII55 protein, conserved region	PFAM	PF04658	TAFII55_N	coord: 1..113 e-value: 8.6E-27 score: 93.9
IPR006751	TAFII55 protein, conserved region	CDD	cd08047	TAF7	coord: 2..113 e-value: 1.12472E-43 score: 140.097
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 146..165
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 89..165
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 103..128
IPR037817	Transcription initiation factor TFIID subunit 7	PANTHER	PTHR12228	TRANSCRIPTION INITIATION FACTOR TFIID 55 KD SUBUNIT-RELATED	coord: 1..113

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g23740.1	Cp4.1LG01g23740.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051123	RNA polymerase II preinitiation complex assembly
biological_process	GO:0006413	translational initiation
biological_process	GO:0006367	transcription initiation from RNA polymerase II promoter
cellular_component	GO:0005669	transcription factor TFIID complex
molecular_function	GO:0016251	RNA polymerase II general transcription initiation factor activity
molecular_function	GO:0003743	translation initiation factor activity