CmoCh18G013090 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh18G013090
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5
Location	Cmo_Chr18: 12519713 .. 12522157 (+)
RNA-Seq Expression	CmoCh18G013090
Synteny	CmoCh18G013090

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGTTCTCCCAAAGCGCCTAGCTCGTCACGACTCACAGAGTGATCGACAGAGAGACATAGGAGTTTTCCGACGATGTTTCTGCGAGTGATCGGACGGCCATTATTGGCCAAGGTGAAGCAGACGACGGGGATCGTCGGTCTGGATGTTGTCCCAAACGCCCGAGAGGTCTTGATCGGCCTTTACGGTAAAACCCTACAGGAGATCCAGGCCGTTCCCGAGGACGAAGGATACCGCAAGGCAGTCGAGAGCTTCACGCGCCACCGCTTGAAGGTCTGCCAGGAGGAGGAGGACTGGGAGCAAATCGAGAAGCGGCTTGGCTGTGGTCAGGTCGAGGAGCTCATTGAGGAAGCTCAGGACGAGCTCAAGCTCATTGCTAAAATGATCGGTATGTATATAATTTTCTGCAACCAAAGTTCTATTTTTTACATATTTGTGAAATTTTGATGACAGTCTATTTCCGTTTCATTTCCTTGTCCTATCTGTTTCGTTATGGGAAGGGAATGTATGAATTGGGGATGGAAAATGGCAGGATTTTCGAGTTATGTGATATTTCTATAATTGCATTGCGTGGAAATGATGGAAACCGAACCTTTCGTACTCAAATTATGAGTTTGGCATCGGTAATGAGACCTTGCAGGCATGTTTTAAATACAAAAGATCCCTATATAAGAGAAAGATTATGGGTATATGAAATCTTTTTGGGTAGACGAAAAGCAAAGTTGTTGTTAGTATTTATGTTCAAAGTGGACGATATCATGTCATTGTGGAGATAGATAGAGGTCGTATGATCCCAAATAGCTGGTATTAGAGTCATGTCCCGAACTTAGCCGTGTTAGTAAAATCCTTGAGTTCCAAATGTAAATGTAGTTAGTCATGAATCCGTGGTTGAGCTTTTGGATAGGTAGTGTGTGCTGTGAGGAGTAAACCTAATTAAAAAGTAATATGTAAAAGTGTAGTTTGAAGGTACGACTATGTGAGGGTAGACTCGAGATGATACTTTGTGCTAGAGGAGGATTGTTTGCGTTAACTAGATAAGAATAAATCCTATAACCGGAGGATTGTTGGCACTACCTAGATAAGAAAAAAAATCATGGGTTATATGAGTGAGAACAATCGTCTCCATTGGTATAAGACTCTTTTAGAGAAAGCAAAAGCAAAAGCAAAATCACGAGTGTTTATGCTCGAAGTGGACAATAACATACCATTACAGGGAAGATCATTGAAAATACAAACAAAGTCCCACATTGACCTTATAAAGAAAAAGTCATAGGTAGATGAGTGAGGACAACCTTCTCCAATAAAAATGAGGCCTTTGAGAGAAAATCAAAACAAAGCCACAAAGGTTTATGCCGAAAGTGAAGATTATCATACTATTGTGGAGATAGGTCGTTGAATGTCAAATAATGGCATTTGCATCTTGTTGTACTGACAAAGCTGTGTTAACACCTATGAATTAGACTGTACATATCCTTTTGTCATTGCTAGCTTCTGGCCTAATAGCAATCCCTGATTTCTGTTATAACCTGAGGATTGTGAAAATTGCATGTGTGAAGCAATATGCCCGACTTCTCTGGTCTTAGCTGCATTGGCGCACATTCATTATTTCATAGACGGAGCCAATATTTTAAATGTCGATGTTCACGAAAACGTCAAGATCTCAATTTTATGAAAATTTCAATGAAAATACCGAGAAAATGCGAGCTTCCCCTTTGCTCTATAGAAATGGATGGAAATGCCTACTACTCATTCCCATTCAATAGGTTCACAATCAGGGGCTGAAAACCAGTGTCGATGAATATTTATTTAGAACCGGTCATCACAATCTGTTTGTAGTTTTCTTAGTCACAAGTTACTTGAAATATGCAGAGTGGGATCCGTGGGGTGTTCCTGATGACTACGAATGTGAAGTGATAGAGAACGATGCGCCAGTACCGAAGCATGTTCCTCTTCACCGACCAGGCCCTCTCCCTGAGGAGTTTTACAAAACGCTGGAGGCCATTAGCAGTGGTGGTAGTGCACAGAAAGTAGAGACGGCCGACAAAGCGTCTCAGGTGACAGAATGATTCTTCTTCACCATTTGGAGATTTCAAGTTTCAGAATCGAAAGCTGTTATTTATCCAATTATGTTTGTTCTTCAATAGGAATGATTGTTCGCAAAGTCGTGTACTTCAATAATAATCCTTACCCGACTCTGGAATGACATCAATTTACCCTTTCTTTGTCTGGTTTAAATTTTACTGTGCACACCAGCCCAGTCACTTCTGGACTGGTTTTGAGAATCAGCAATTTTAATCTTTTATTCCATAGATTGGAGAATAATTACTAAATTTTTGGATTTGTTTCTGATTGGTCTATCAACTTTGATGGATGTATCTTTTTGGTCTCGGACTTGTAAGACAATAAATTGAAGATTCAAGAACTTATTAGACACGAATATGAAGCTTA

mRNA sequence

CGTTCTCCCAAAGCGCCTAGCTCGTCACGACTCACAGAGTGATCGACAGAGAGACATAGGAGTTTTCCGACGATGTTTCTGCGAGTGATCGGACGGCCATTATTGGCCAAGGTGAAGCAGACGACGGGGATCGTCGGTCTGGATGTTGTCCCAAACGCCCGAGAGGTCTTGATCGGCCTTTACGGTAAAACCCTACAGGAGATCCAGGCCGTTCCCGAGGACGAAGGATACCGCAAGGCAGTCGAGAGCTTCACGCGCCACCGCTTGAAGGTCTGCCAGGAGGAGGAGGACTGGGAGCAAATCGAGAAGCGGCTTGGCTGTGGTCAGGTCGAGGAGCTCATTGAGGAAGCTCAGGACGAGCTCAAGCTCATTGCTAAAATGATCGAGTGGGATCCGTGGGGTGTTCCTGATGACTACGAATGTGAAGTGATAGAGAACGATGCGCCAGTACCGAAGCATGTTCCTCTTCACCGACCAGGCCCTCTCCCTGAGGAGTTTTACAAAACGCTGGAGGCCATTAGCAGTGGTGGTAGTGCACAGAAAGTAGAGACGGCCGACAAAGCGTCTCAGGTGACAGAATGATTCTTCTTCACCATTTGGAGATTTCAAGTTTCAGAATCGAAAGCTGTTATTTATCCAATTATGTTTGTTCTTCAATAGGAATGATTGTTCGCAAAGTCGTGTACTTCAATAATAATCCTTACCCGACTCTGGAATGACATCAATTTACCCTTTCTTTGTCTGGTTTAAATTTTACTGTGCACACCAGCCCAGTCACTTCTGGACTGGTTTTGAGAATCAGCAATTTTAATCTTTTATTCCATAGATTGGAGAATAATTACTAAATTTTTGGATTTGTTTCTGATTGGTCTATCAACTTTGATGGATGTATCTTTTTGGTCTCGGACTTGTAAGACAATAAATTGAAGATTCAAGAACTTATTAGACACGAATATGAAGCTTA

Coding sequence (CDS)

ATGTTTCTGCGAGTGATCGGACGGCCATTATTGGCCAAGGTGAAGCAGACGACGGGGATCGTCGGTCTGGATGTTGTCCCAAACGCCCGAGAGGTCTTGATCGGCCTTTACGGTAAAACCCTACAGGAGATCCAGGCCGTTCCCGAGGACGAAGGATACCGCAAGGCAGTCGAGAGCTTCACGCGCCACCGCTTGAAGGTCTGCCAGGAGGAGGAGGACTGGGAGCAAATCGAGAAGCGGCTTGGCTGTGGTCAGGTCGAGGAGCTCATTGAGGAAGCTCAGGACGAGCTCAAGCTCATTGCTAAAATGATCGAGTGGGATCCGTGGGGTGTTCCTGATGACTACGAATGTGAAGTGATAGAGAACGATGCGCCAGTACCGAAGCATGTTCCTCTTCACCGACCAGGCCCTCTCCCTGAGGAGTTTTACAAAACGCTGGAGGCCATTAGCAGTGGTGGTAGTGCACAGAAAGTAGAGACGGCCGACAAAGCGTCTCAGGTGACAGAATGA

Protein sequence

MFLRVIGRPLLAKVKQTTGIVGLDVVPNAREVLIGLYGKTLQEIQAVPEDEGYRKAVESFTRHRLKVCQEEEDWEQIEKRLGCGQVEELIEEAQDELKLIAKMIEWDPWGVPDDYECEVIENDAPVPKHVPLHRPGPLPEEFYKTLEAISSGGSAQKVETADKASQVTE

Homology

[Close]

BLAST of CmoCh18G013090 vs. ExPASy Swiss-Prot
Match: Q9FLX7 (Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At5g52840 PE=1 SV=1)

HSP 1 Score: 275.8 bits (704), Expect = 3.3e-73
Identity = 132/149 (88.59%), Postives = 138/149 (92.62%), Query Frame = 0


Query: 1   MFLRVIGRPLLAKVKQTTGIVGLDVVPNAREVLIGLYGKTLQEIQAVPEDEGYRKAVESF 60
           MFLR IGRPLLAKVKQTTGIVGLDVVPNAR VLI LY KTL+EIQAVPEDEGYRKAVESF
Sbjct: 1   MFLRAIGRPLLAKVKQTTGIVGLDVVPNARAVLIDLYSKTLKEIQAVPEDEGYRKAVESF 60

Query: 61  TRHRLKVCQEEEDWEQIEKRLGCGQVEELIEEAQDELKLIAKMIEWDPWGVPDDYECEVI 120
           TR RL VC+EEEDWE IEKRLGCGQVEELIEEA+DEL LI KMIEWDPWGVPDDYECEVI
Sbjct: 61  TRQRLNVCKEEEDWEMIEKRLGCGQVEELIEEARDELTLIGKMIEWDPWGVPDDYECEVI 120

Query: 121 ENDAPVPKHVPLHRPGPLPEEFYKTLEAI 150
           ENDAP+PKHVP HRPGPLPE+FYKTLE +
Sbjct: 121 ENDAPIPKHVPQHRPGPLPEQFYKTLEGL 149

[Close]

BLAST of CmoCh18G013090 vs. ExPASy Swiss-Prot
Match: Q559Z4 (Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5 OS=Dictyostelium discoideum OX=44689 GN=ndufa5 PE=3 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 5.7e-17
Identity = 44/107 (41.12%), Postives = 71/107 (66.36%), Query Frame = 0


Query: 14  VKQTTGIVGLDVVPNAREVLIGLYGKTLQEIQAVPEDEGYRKAVESFTRHRLKVCQEEED 73
           +K++TGI GL V PNAR +L GLY + L++++ +P   GYRK+ E  T+ RL V + E D
Sbjct: 6   IKKSTGITGLKVEPNARHILAGLYNQLLKKLEILPPTAGYRKSAELETKFRLGVIENETD 65

Query: 74  WEQIEKRLGCGQVEELIEEAQDELKLIAKMIEWDPWGVPDDYECEVI 121
             +IE ++  GQ+EELI +A+++LK++  + E   W +PD  +  V+
Sbjct: 66  IVKIENKIYAGQIEELIVQAKNDLKVVDLVHESRAWELPDKNKPPVV 112

[Close]

BLAST of CmoCh18G013090 vs. ExPASy Swiss-Prot
Match: P23935 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5 OS=Bos taurus OX=9913 GN=NDUFA5 PE=1 SV=3)

HSP 1 Score: 80.9 bits (198), Expect = 1.6e-14
Identity = 41/96 (42.71%), Postives = 61/96 (63.54%), Query Frame = 0


Query: 14  VKQTTGIVGLDVVPNAREVLIGLYGKTLQEIQAVPEDEGYRKAVESFTRHRLKVCQEEED 73
           +K+TTG+VGL V     E L  LY K L  +  +P++  YRK  E  T  +L + + E D
Sbjct: 5   LKKTTGLVGLAVCETPHERLKILYTKILDVLGHIPKNAAYRKYTEQITNEKLSMVKAEPD 64

Query: 74  WEQIEKRLGCGQVEELIEEAQDELKLIAKMIEWDPW 110
            +++E+RL  GQ+EE+I +A++EL L  KMI+W PW
Sbjct: 65  VKKLEERLQGGQIEEVILQAENELSLARKMIQWKPW 100

[Close]

BLAST of CmoCh18G013090 vs. ExPASy Swiss-Prot
Match: Q9CPP6 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5 OS=Mus musculus OX=10090 GN=Ndufa5 PE=1 SV=3)

HSP 1 Score: 75.9 bits (185), Expect = 5.0e-13
Identity = 40/96 (41.67%), Postives = 58/96 (60.42%), Query Frame = 0


Query: 14  VKQTTGIVGLDVVPNAREVLIGLYGKTLQEIQAVPEDEGYRKAVESFTRHRLKVCQEEED 73
           +K+TTG+VGL V     E L  LY KTL  ++  P+   YRK  E  T  +L + + E D
Sbjct: 5   LKKTTGLVGLAVCDTPHERLTILYTKTLDILKHFPKHAAYRKYTEQITNEKLDMVKAEPD 64

Query: 74  WEQIEKRLGCGQVEELIEEAQDELKLIAKMIEWDPW 110
            +++E  L  G+VEE+I +A+ EL L  KM++W PW
Sbjct: 65  VKKLEALLQGGEVEEVILQAEKELSLARKMLKWKPW 100

[Close]

BLAST of CmoCh18G013090 vs. ExPASy Swiss-Prot
Match: Q18359 (Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5 OS=Caenorhabditis elegans OX=6239 GN=C33A12.1 PE=3 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 6.5e-13
Identity = 35/95 (36.84%), Postives = 60/95 (63.16%), Query Frame = 0


Query: 15  KQTTGIVGLDVVPNAREVLIGLYGKTLQEIQAVPEDEGYRKAVESFTRHRLKVCQEEEDW 74
           K+TTGI GL V  +    L  +YG+ L+ ++ +P D  YRK  E+  + RL + Q E D 
Sbjct: 40  KKTTGITGLFVNEHPHRALTVVYGRILRALEQIPRDAAYRKYTEAVVKQRLALVQAENDI 99

Query: 75  EQIEKRLGCGQVEELIEEAQDELKLIAKMIEWDPW 110
           +++E+++G GQ+EE+IE+A+ EL+    +++   W
Sbjct: 100 KKLEEKIGMGQIEEVIEQAEYELETTRAIVDSKAW 134

[Close]

BLAST of CmoCh18G013090 vs. ExPASy TrEMBL
Match: A0A6J1G1X4 (probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111449938 PE=3 SV=1)

HSP 1 Score: 340.1 bits (871), Expect = 5.2e-90
Identity = 169/169 (100.00%), Postives = 169/169 (100.00%), Query Frame = 0


Query: 1   MFLRVIGRPLLAKVKQTTGIVGLDVVPNAREVLIGLYGKTLQEIQAVPEDEGYRKAVESF 60
           MFLRVIGRPLLAKVKQTTGIVGLDVVPNAREVLIGLYGKTLQEIQAVPEDEGYRKAVESF
Sbjct: 1   MFLRVIGRPLLAKVKQTTGIVGLDVVPNAREVLIGLYGKTLQEIQAVPEDEGYRKAVESF 60

Query: 61  TRHRLKVCQEEEDWEQIEKRLGCGQVEELIEEAQDELKLIAKMIEWDPWGVPDDYECEVI 120
           TRHRLKVCQEEEDWEQIEKRLGCGQVEELIEEAQDELKLIAKMIEWDPWGVPDDYECEVI
Sbjct: 61  TRHRLKVCQEEEDWEQIEKRLGCGQVEELIEEAQDELKLIAKMIEWDPWGVPDDYECEVI 120

Query: 121 ENDAPVPKHVPLHRPGPLPEEFYKTLEAISSGGSAQKVETADKASQVTE 170
           ENDAPVPKHVPLHRPGPLPEEFYKTLEAISSGGSAQKVETADKASQVTE
Sbjct: 121 ENDAPVPKHVPLHRPGPLPEEFYKTLEAISSGGSAQKVETADKASQVTE 169

[Close]

BLAST of CmoCh18G013090 vs. ExPASy TrEMBL
Match: A0A6J1HXB9 (probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111467715 PE=3 SV=1)

HSP 1 Score: 335.5 bits (859), Expect = 1.3e-88
Identity = 169/170 (99.41%), Postives = 169/170 (99.41%), Query Frame = 0


Query: 1   MFLRVIGRPLLAKVKQTTGIVGLDVVPNAREVLIGLYGKTLQEIQAVPEDEGYRKAVESF 60
           MFLRVIGRPLLAKVKQTTGIVGLDVVPNAREVLIGLYGKTLQEIQAVPEDEGYRKAVESF
Sbjct: 1   MFLRVIGRPLLAKVKQTTGIVGLDVVPNAREVLIGLYGKTLQEIQAVPEDEGYRKAVESF 60

Query: 61  TRHRLKVCQEEEDWEQIEKRLGCGQVEELIEEAQDELKLIAKMIEWDPWGVPDDYECEVI 120
           TRHRLKVCQEEEDWEQIEKRLGCGQVEELIEEAQDELKLIAKMIEWDPWGVPDDYECEVI
Sbjct: 61  TRHRLKVCQEEEDWEQIEKRLGCGQVEELIEEAQDELKLIAKMIEWDPWGVPDDYECEVI 120

Query: 121 ENDAPVPKHVPLHRPGPLPEEFYKTLEAISSGG-SAQKVETADKASQVTE 170
           ENDAPVPKHVPLHRPGPLPEEFYKTLEAISSGG SAQKVETADKASQVTE
Sbjct: 121 ENDAPVPKHVPLHRPGPLPEEFYKTLEAISSGGSSAQKVETADKASQVTE 170

[Close]

BLAST of CmoCh18G013090 vs. ExPASy TrEMBL
Match: A0A6J1CII6 (probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111011683 PE=3 SV=1)

HSP 1 Score: 318.2 bits (814), Expect = 2.1e-83
Identity = 158/169 (93.49%), Postives = 165/169 (97.63%), Query Frame = 0


Query: 1   MFLRVIGRPLLAKVKQTTGIVGLDVVPNAREVLIGLYGKTLQEIQAVPEDEGYRKAVESF 60
           MFLRVIGRPLLAKVKQTTGIVGL+VVPNAREVLIGLY KTL+EIQAVPEDEGYRKAVESF
Sbjct: 1   MFLRVIGRPLLAKVKQTTGIVGLEVVPNAREVLIGLYSKTLKEIQAVPEDEGYRKAVESF 60

Query: 61  TRHRLKVCQEEEDWEQIEKRLGCGQVEELIEEAQDELKLIAKMIEWDPWGVPDDYECEVI 120
           TRHRLKVCQEE+DWE+IEKRLGCGQVEELIEEAQDELKLIAKMIEWDPWGVPDDYECEVI
Sbjct: 61  TRHRLKVCQEEDDWEKIEKRLGCGQVEELIEEAQDELKLIAKMIEWDPWGVPDDYECEVI 120

Query: 121 ENDAPVPKHVPLHRPGPLPEEFYKTLEAISSGGSAQKVETADKASQVTE 170
           ENDA VPKH+PLHRPGPLPEEFYKTLEAI  GGS+QKVETA+KASQVTE
Sbjct: 121 ENDASVPKHIPLHRPGPLPEEFYKTLEAI-GGGSSQKVETAEKASQVTE 168

[Close]

BLAST of CmoCh18G013090 vs. ExPASy TrEMBL
Match: A0A1S3AZ47 (probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103484126 PE=3 SV=1)

HSP 1 Score: 317.8 bits (813), Expect = 2.8e-83
Identity = 159/169 (94.08%), Postives = 162/169 (95.86%), Query Frame = 0


Query: 1   MFLRVIGRPLLAKVKQTTGIVGLDVVPNAREVLIGLYGKTLQEIQAVPEDEGYRKAVESF 60
           MFLR IGRPLLAKVKQTTGIVGLDVVPNAREVLIGLY KTL+EIQAVPEDEGYRKAVESF
Sbjct: 1   MFLRAIGRPLLAKVKQTTGIVGLDVVPNAREVLIGLYSKTLKEIQAVPEDEGYRKAVESF 60

Query: 61  TRHRLKVCQEEEDWEQIEKRLGCGQVEELIEEAQDELKLIAKMIEWDPWGVPDDYECEVI 120
           TRHRLKVCQEEEDWE IEKRLGCGQVEELIEEAQDELKLIAKMIEWDPWGVPDDYECEVI
Sbjct: 61  TRHRLKVCQEEEDWENIEKRLGCGQVEELIEEAQDELKLIAKMIEWDPWGVPDDYECEVI 120

Query: 121 ENDAPVPKHVPLHRPGPLPEEFYKTLEAISSGGSAQKVETADKASQVTE 170
           ENDAPVPKHVPLHRPGPLPEEFYKTLEAI SG S +KVET +KASQVTE
Sbjct: 121 ENDAPVPKHVPLHRPGPLPEEFYKTLEAI-SGDSTRKVETTEKASQVTE 168

[Close]

BLAST of CmoCh18G013090 vs. ExPASy TrEMBL
Match: A0A6J1JA00 (probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111482620 PE=3 SV=1)

HSP 1 Score: 315.1 bits (806), Expect = 1.8e-82
Identity = 157/169 (92.90%), Postives = 162/169 (95.86%), Query Frame = 0


Query: 1   MFLRVIGRPLLAKVKQTTGIVGLDVVPNAREVLIGLYGKTLQEIQAVPEDEGYRKAVESF 60
           MFLR IGRPLLAKVKQTTGIVGLDVVPNAREVLIGLY KTL+EIQAVPEDEGYRKAVESF
Sbjct: 1   MFLRAIGRPLLAKVKQTTGIVGLDVVPNAREVLIGLYSKTLKEIQAVPEDEGYRKAVESF 60

Query: 61  TRHRLKVCQEEEDWEQIEKRLGCGQVEELIEEAQDELKLIAKMIEWDPWGVPDDYECEVI 120
           T HRLKVCQEEEDWE+IEKRLGCGQVEELIEEAQDELKLIAKMIEWDPWGVPDDYECEVI
Sbjct: 61  TNHRLKVCQEEEDWEKIEKRLGCGQVEELIEEAQDELKLIAKMIEWDPWGVPDDYECEVI 120

Query: 121 ENDAPVPKHVPLHRPGPLPEEFYKTLEAISSGGSAQKVETADKASQVTE 170
           ENDAPVPKHVPLHRPGPLPEEFYKTLEAI SG  AQKV++A+K SQVTE
Sbjct: 121 ENDAPVPKHVPLHRPGPLPEEFYKTLEAI-SGDGAQKVDSAEKTSQVTE 168

[Close]

BLAST of CmoCh18G013090 vs. TAIR 10
Match: AT5G52840.1 (NADH-ubiquinone oxidoreductase-related )

HSP 1 Score: 275.8 bits (704), Expect = 2.3e-74
Identity = 132/149 (88.59%), Postives = 138/149 (92.62%), Query Frame = 0


Query: 1   MFLRVIGRPLLAKVKQTTGIVGLDVVPNAREVLIGLYGKTLQEIQAVPEDEGYRKAVESF 60
           MFLR IGRPLLAKVKQTTGIVGLDVVPNAR VLI LY KTL+EIQAVPEDEGYRKAVESF
Sbjct: 1   MFLRAIGRPLLAKVKQTTGIVGLDVVPNARAVLIDLYSKTLKEIQAVPEDEGYRKAVESF 60

Query: 61  TRHRLKVCQEEEDWEQIEKRLGCGQVEELIEEAQDELKLIAKMIEWDPWGVPDDYECEVI 120
           TR RL VC+EEEDWE IEKRLGCGQVEELIEEA+DEL LI KMIEWDPWGVPDDYECEVI
Sbjct: 61  TRQRLNVCKEEEDWEMIEKRLGCGQVEELIEEARDELTLIGKMIEWDPWGVPDDYECEVI 120

Query: 121 ENDAPVPKHVPLHRPGPLPEEFYKTLEAI 150
           ENDAP+PKHVP HRPGPLPE+FYKTLE +
Sbjct: 121 ENDAPIPKHVPQHRPGPLPEQFYKTLEGL 149

[Close]

BLAST of CmoCh18G013090 vs. TAIR 10
Match: AT4G28005.1 (BEST Arabidopsis thaliana protein match is: NADH-ubiquinone oxidoreductase-related (TAIR:AT5G52840.1); Has 37 Blast hits to 37 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). )

HSP 1 Score: 114.8 bits (286), Expect = 6.9e-26
Identity = 75/169 (44.38%), Postives = 87/169 (51.48%), Query Frame = 0


Query: 1   MFLRVIGRPLLAKVKQTTGIVGLDVVPNAREVLIGLYGKTLQEIQAVPEDEGYRKAVESF 60
           MF RVIGRPLLAKVKQTTGIV                                       
Sbjct: 1   MFQRVIGRPLLAKVKQTTGIV--------------------------------------- 60

Query: 61  TRHRLKVCQEEEDWEQIEKRLGCGQVEELIEEAQDELKLIAKMIEWDPWGVPDDYECEVI 120
                +VC EEEDW  IEKRL CG+VEELIEEA DEL L+ KMI              +I
Sbjct: 61  -----EVCPEEEDWGVIEKRLACGKVEELIEEASDELTLVGKMI--------GSLHPNLI 115

Query: 121 ENDAPVPKHVPLHRPGPLPEEFYKTLEAISSGGSAQKVETADKASQVTE 170
              AP+PKHVP HRPGPLPEEFY+TL+A++S    +   T+    Q+ E
Sbjct: 121 L--APIPKHVPHHRPGPLPEEFYRTLQAVNSESKTEITATSSSDPQLKE 115

The following BLAST results are available for this feature:

BLAST of CmoCh18G013090 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FLX7	3.3e-73	88.59	Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochond...	[more]
Q559Z4	5.7e-17	41.12	Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5 OS=Dictyos...	[more]
P23935	1.6e-14	42.71	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5 OS=Bos taurus OX=99...	[more]
Q9CPP6	5.0e-13	41.67	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5 OS=Mus musculus OX=...	[more]
Q18359	6.5e-13	36.84	Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5 OS=Caenorh...	[more]

BLAST of CmoCh18G013090 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G1X4	5.2e-90	100.00	probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochond...	[more]
A0A6J1HXB9	1.3e-88	99.41	probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochond...	[more]
A0A6J1CII6	2.1e-83	93.49	probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochond...	[more]
A0A1S3AZ47	2.8e-83	94.08	probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochond...	[more]
A0A6J1JA00	1.8e-82	92.90	probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochond...	[more]

BLAST of CmoCh18G013090 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G52840.1	2.3e-74	88.59	NADH-ubiquinone oxidoreductase-related	[more]
AT4G28005.1	6.9e-26	44.38	BEST Arabidopsis thaliana protein match is: NADH-ubiquinone oxidoreductase-relat...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006806	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5	PFAM	PF04716	ETC_C1_NDUFA5	coord: 22..88 e-value: 3.1E-27 score: 94.2
IPR006806	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5	PANTHER	PTHR12653	NADH-UBIQUINONE OXIDOREDUCTASE 13 KD-B SUBUNIT	coord: 1..164
None	No IPR available	PANTHER	PTHR12653:SF1	BNAA02G10640D PROTEIN	coord: 1..164

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh18G013090.1	CmoCh18G013090.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0022904	respiratory electron transport chain
cellular_component	GO:0005743	mitochondrial inner membrane
cellular_component	GO:0045271	respiratory chain complex I