CmoCh18G011330 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh18G011330
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Unknown protein
Location	Cmo_Chr18: 11633649 .. 11638079 (-)
RNA-Seq Expression	CmoCh18G011330
Synteny	CmoCh18G011330

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGGATTCTCACAACGGGAATGTGTACAGTTGTTTGGCTATGGTAAGTAATTCCTCTATTCATTCTTAAATATTTTTCTTGAGATCTGTAGTTTTTGTTCCGATAGTTCTTTTTGCAACAATAGTTCATCTGTAGGAATTTGATCCAGCAATGCTCTTTTTCTCCTTAGATGCTAAGATTTTACTCCAAAAACTTTCTCAAACGAGATAAGAAATGGTTGCTTCATAAACAACCTGAATGTTTTTCTTTCTTTTCGTCTCGATTGCTATCACAGGGTAATACGGAGTTCATATAACCATATTGATGAAGAAGCTGATGGATCCAATCCGACGATGTCAATGACTAGAAATCGAGGCACGTGGAATCTATAGATTTTGAGATTTTTCGCAGAAGAAGTAGCTGCAATTCATTTTTGCCAGTCTATATTCTTAGAAATCCATTTATCTCCCCTCACCTCTCTTCTGGCTTTCTACCTTAAAAATATCTTCATTATTTTGATACTGAGACCATGTTATTTCTGTATTGAACCATATTTTTCTTCTTTTGGTAAAGAATGTCCAATTGCCACGAAATATAAAAGGGCAATTTTCTCTTCCTTTCTCTTCATCTCAAACTTAACCCCCCCATATCCACATCCATATGAATGAGAATATCAAATTTCATACTATTTATACAACTTTTGGGCAAAATATTTGCACATAGACATGAAATTGATATGGTTAGAAAGTATTATTTAATGTTTGAGAGGTATAATGCTTGGTTTGTAAATAATGTTTTGGTGTAAATTTTCAGTTATTTTAGGGTCAAATTCTTTTTAACTCTAGCTATTTAGTTTAATTTTATTAAAGTATCTAAAAATGTTGCATAATTTTATGAAAGTATCTAAAAATGTTGGAGATGCAGGGTATCGAACCCTGTACCTCTCGCATGCAAAGCAAGCGCTCTACCATTTGAGCTACATCCCCATTTTTTTTTTTTTTTTGAAGATTTTCTTAACCTTTTTTATTTATTCAATTTGTTAATTTTAGAACTCAAAAATAGAATTATAACTCGACCTCTATCCAACCTTTTAAGAAACCTTTTAAGAATATATATAATTGAGATTGAGATGTAATGTGAATAAATATAATTTTTTGAAAAACATAATTAAAAAAATTTTAGACTCAACCTTCTATTGTGTCTATACAAGTGAAACGGGCCAATACCTTGTATGCTTTCAGGGATTATCTTCACCAGAAAATTCTTATAGCGCCCGGTAAGGAGCGGCGTAAAAGGTCTTCCCCTTGAGAGGTTGTGTAAATTGTCGATGAGGGCAACTGCACCTGGTCCTAAGGGTTTTTGGTTGTGAAAGATTAGTTTTTACAAAGACCCATCAAATCATGAAAGAATGAAACCTGTATTTGTCTTCTGGTCTTCTTGTCTTCTCTCAAAGAAATCTAAGGTAGCCCATGTGAAGGATTTTTAGGTCCATGAGTTTGTGGTTATATGAATCTATCTATGATGTTGACAGGTAGATTGGGGCAGTGGCTCCTATGTTGCATGGGGATAAATTGCCAAGGAAATTATCATCCTTCACTCAGTATCAACTTCATCAACAAAGTTGAGTTGTCTTCAAATGAGTTAGTCTCCAAATTTGATTTTAAGTCGAGAGACTTCTTATCAGAGCCAGACACTTGAGAGATGTGTGAGCGTCTAAAGATGCTGGACCCAAAAGGAGTAGATTGGGGATCTCACATCGATTGAAAAGGGAACGAGTGCCAGTAAGGACGCTGGGCACCGAAGAAGGTGGATTGTGAGATTTCACATTGGAAAGGAGAACAAAACATTATTTATAAGGGTTTGGAAACCTCTCCCTAACAAGCACATTTTAAAAACCTTGAAAGGAAGCCCGAAAGAGAAAGCCCAAAGAGAACAATATCTACTAGCGGTGAGCTTAGACCATTACACTTCAGGGGCCAGTACCAAGAGACTTGCATCAGCTCAAAAAAAAAAAGGAAAAAAGAACAGAAAATGTGAACTCCTAGATTGGAGGGCATTTCAATAGAAGTATGGCATGCGGAACAGAGAACTTAGCATATTGACCCTGGTGTATAGAAACTAAGGAATTCATCTTTACAAAGGAAATTTTTTTATTATACTATCCAGCAAAAGATTCTGTATTGACATTTACAAAACAAAAAGGGATCGACAGTAGAAAGATGCCAGGAAGGGCTAAGGTACCATCCATATGAACAATTTCCCTTAAGACTCTTCTTTGACAAAGAAGGTTTGTGGTAGGCAGAAATCTTCCTCGTGATTCAGAATTTCCATTTCCTCATCGTCTGGCTTCTGAAATGCATTGTGATGGAGAGGAAAGCAATATTAGCACATATATCTCATCAGTTATCAGGAGGACAGGAAAAGATGACTTAAGGAGTGGCAAAGAAATAAGACTTGCCCCCCACATTATTTGGTTCTAACTCTACAAAATGTAAATTTGAATATGTCAACTAAGCTGTAGACATATTTCCTACTCAATCTGGAAAAGTATCTTCTTTAGAAAGAAAATGAATATGAGGTCTATAAGGTCAGATGTGAGGTCAGAGCTCTACTTAGTATGTACCCCAACATGTCACAAATTCATGGCCCTCCACAAGATGTATGATTATTAGGAATTAGCAAATTTTTTTGTGAGATCCCACGTCGGTTGGGGAGGAGAACGAAGCATTCTTTATAAGGGTGTGGAAACCTCTCCTTAGTAGACACATTTTAAAAACCTTAAAGGGAAAGCCCAAAGAGGATAATTTGGCTAGCGATGAGTTTAGGTTGTTACAAATGGTATTAGAGCCAGACACCAAGCGATGCGCCAGCGAGGAGGCTGTGCCCAGAAGGGAATGGACACGAGGCAGTATGCCAGCAAAGACGCTAGGCCCCGAAGGGGGAGGATTGAGGGGGTTCCACATCGATTGGAGAAGGGAACGAATGCCAGTGAGGACACTAGGCATCGAAGGAGGGTGGATTGTGAGATCCCGCATCGGTTGGAGAGGAGAACAAAACATTCTTTATAAGGGTGTGGAAATCTCTCTCCAGCAAACACGTTTTAAAAACCTTGAGGGGAAGCCCGAAAGTGAAAGCCCAAAGAAGGTAATATCTGTTAACGGCGGGCTTGGGCGGTTACATTTTCTTTCCTAAAGAGTGAAGGACAGAAAAGTGAATTTTCTAGATTATATATTTATGTATTTAGATTATCTTCCTTCTCAAATAAAATTGAGCCAGCAGCCAAAAAAAAAAAAAACAAGGCGTTAGTGATTCTTTTTACCAGCATTTCCAGGTTATAGAACCGATCCAACAACTGTAGAACTTCATCAGAAGAGAACTGACGATCAAAGCTGTGGCAAGAAGATGGTAAACCAATAAATTATTATGCATAAGAAATTGTAGAAGCCACTAGATTTTATTGTCAAAAGCTGAATAAGATGAAAGAAGGTGGTACATGGGGCAGAGAAAACCTTCTTCTTAGAAACTCCATCAACCCGAAGAGAACAAAATGGCGATGTATGCCTGTATGAAAATAACGAAAATTCAGTGACGGCAAGCTCGTATGTAGAAGGGAAAAGAAAAGACTAATGAACAAGATGCCATTATCTGGTATCATTAGCAAATACGTCAAAGTTTTATTTCCTTCCTTGCGAGCCTAATTGACAGCTTAAGTTCTCGATGGTGATTTTATTGATTATAGCATATTCAATTCACAACATTTCCTCCCTGTTCTTAGTCGGTAAAAGCCTAAAGTGAAAAACTGAATGACATCCCGGGAAGACAACTTTAATTTGCTCGGTACTCTCTTCCACTCATTTCTCAACCGTAAGAATAGCTACATCATTCGTAATTTCTGGTCCTCCATGCCACTTTTGATCAGACAACACAAAATAATAATAACAGTATGAAGTTGATCATTATCACTGAACACACAACTAGACAATAGGTTAGATTCTCACTTGTTGATTAAAATCAAGAATTCCTGCCGTGATGCTGAGGACGAACAGACTCGAAAACTAATGACATACTCACGTTTTGATAATACATGCAATTAAGAACCAGATAGAATAGTGTTAAACCAAACTTGCCTTGCAGTTTGACTAGTGGATAAATTTCAAGAGCTTGCAAGAGTTTGAGTTCCAATTCAATCTGTGCTTGCTCCTAACCACAGCATACAAAAAACAAGAACAAAATCAAATTCCAGCGATCATAAGACAATGTCTGAAAATAGAGAGAGAGAGAGAGACCTTGGGAAGAGAAGAAGCGGATGACGGAGGAGCTTTGCATGGAGAGTGTACAGACATGCCGTCTTGTTCTTCATCTCTCCCTTTGCCGCCGCTTTCCATGAAGAAACTAACAATCGCAATAGACGTTCTTCGTCGAAGAGAAATGCTTCGCCGGAGTTTCTAG

mRNA sequence

ATGTCGGATTCTCACAACGGGAATGTGTACAGTTGTTTGGCTATGCGCCCGGTAAGGAGCGGCGTAAAAGGTCTTCCCCTTGAGAGGTTGTGTAAATTGTCGATGAGGGCAACTGCACCTGGTCCTAAGGGTTATAGAACCGATCCAACAACTGTAGAACTTCATCAGAAGAGAACTGACGATCAAAGCTGTGGCAAGAAGATGAGCTTGCAAGAGTTTGAGTTCCAATTCAATCTGTGCTTGCTCCTAACCACAGCATACAAAAAACAAGAACAAAATCAAATTCCAGCGATCATAAGACAATGTCTGAAAATAGAGAGAGAGAGAGAGACCTTGGGAAGAGAAGAAGCGGATGACGGAGGAGCTTTGCATGGAGAGTGTACAGACATGCCGTCTTGTTCTTCATCTCTCCCTTTGCCGCCGCTTTCCATGAAGAAACTAACAATCGCAATAGACGTTCTTCGTCGAAGAGAAATGCTTCGCCGGAGTTTCTAG

Coding sequence (CDS)

ATGTCGGATTCTCACAACGGGAATGTGTACAGTTGTTTGGCTATGCGCCCGGTAAGGAGCGGCGTAAAAGGTCTTCCCCTTGAGAGGTTGTGTAAATTGTCGATGAGGGCAACTGCACCTGGTCCTAAGGGTTATAGAACCGATCCAACAACTGTAGAACTTCATCAGAAGAGAACTGACGATCAAAGCTGTGGCAAGAAGATGAGCTTGCAAGAGTTTGAGTTCCAATTCAATCTGTGCTTGCTCCTAACCACAGCATACAAAAAACAAGAACAAAATCAAATTCCAGCGATCATAAGACAATGTCTGAAAATAGAGAGAGAGAGAGAGACCTTGGGAAGAGAAGAAGCGGATGACGGAGGAGCTTTGCATGGAGAGTGTACAGACATGCCGTCTTGTTCTTCATCTCTCCCTTTGCCGCCGCTTTCCATGAAGAAACTAACAATCGCAATAGACGTTCTTCGTCGAAGAGAAATGCTTCGCCGGAGTTTCTAG

Protein sequence

MSDSHNGNVYSCLAMRPVRSGVKGLPLERLCKLSMRATAPGPKGYRTDPTTVELHQKRTDDQSCGKKMSLQEFEFQFNLCLLLTTAYKKQEQNQIPAIIRQCLKIERERETLGREEADDGGALHGECTDMPSCSSSLPLPPLSMKKLTIAIDVLRRREMLRRSF

Homology

[Close]

BLAST of CmoCh18G011330 vs. ExPASy TrEMBL
Match: A0A2P2IVD3 (Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 2.0e-06
Identity = 30/36 (83.33%), Postives = 32/36 (88.89%), Query Frame = 0


Query: 108 ERETLGREEADDGGALHGECTDMPSCSS--SLPLPP 142
           ERETL REEA++GGALHGECTDMPSCSS  SLP PP
Sbjct: 2   ERETLEREEAEEGGALHGECTDMPSCSSSFSLPFPP 37

The following BLAST results are available for this feature:

BLAST of CmoCh18G011330 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh18G011330 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2P2IVD3	2.0e-06	83.33	Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1	[more]

BLAST of CmoCh18G011330 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh18G011330.1	CmoCh18G011330.1	mRNA