CmoCh18G010230 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh18G010230
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	VQ motif-containing protein 8
Location	Cmo_Chr18: 11039678 .. 11040034 (-)
RNA-Seq Expression	CmoCh18G010230
Synteny	CmoCh18G010230

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCCCACCCAAGCCCCGCCACATCCACGGCCCTCGCCCACCGCCCCTCCTCCTCCACAAACATTCTCGTACCATCCGAAAGCCCTCTCCCCCGCCGCAGCTCCGCCGCCCGGTCATTATCTACACCCATTCCCCCAAGATCATCCACACGCAGCCCAAGGACTTCATGGCGCTCGTCCAACGCCTCACCGGCTGCTCTCCCCCCAACGCCGACAAAGCGCCGTCCGACAACAATGATTCCTCCTCGGTTGTGACGGAGGAGGACAGTAATTGTCCCTTCTTCACTCCTCGTTCTTTGGTTAATTCCTTGTCCCCTTCTTTCATGGAGTTTCTCAAAGGGCTGCCGGAATTTTAA

mRNA sequence

ATGAGCCCACCCAAGCCCCGCCACATCCACGGCCCTCGCCCACCGCCCCTCCTCCTCCACAAACATTCTCGTACCATCCGAAAGCCCTCTCCCCCGCCGCAGCTCCGCCGCCCGGTCATTATCTACACCCATTCCCCCAAGATCATCCACACGCAGCCCAAGGACTTCATGGCGCTCGTCCAACGCCTCACCGGCTGCTCTCCCCCCAACGCCGACAAAGCGCCGTCCGACAACAATGATTCCTCCTCGGTTGTGACGGAGGAGGACAGTAATTGTCCCTTCTTCACTCCTCGTTCTTTGGTTAATTCCTTGTCCCCTTCTTTCATGGAGTTTCTCAAAGGGCTGCCGGAATTTTAA

Coding sequence (CDS)

ATGAGCCCACCCAAGCCCCGCCACATCCACGGCCCTCGCCCACCGCCCCTCCTCCTCCACAAACATTCTCGTACCATCCGAAAGCCCTCTCCCCCGCCGCAGCTCCGCCGCCCGGTCATTATCTACACCCATTCCCCCAAGATCATCCACACGCAGCCCAAGGACTTCATGGCGCTCGTCCAACGCCTCACCGGCTGCTCTCCCCCCAACGCCGACAAAGCGCCGTCCGACAACAATGATTCCTCCTCGGTTGTGACGGAGGAGGACAGTAATTGTCCCTTCTTCACTCCTCGTTCTTTGGTTAATTCCTTGTCCCCTTCTTTCATGGAGTTTCTCAAAGGGCTGCCGGAATTTTAA

Protein sequence

MSPPKPRHIHGPRPPPLLLHKHSRTIRKPSPPPQLRRPVIIYTHSPKIIHTQPKDFMALVQRLTGCSPPNADKAPSDNNDSSSVVTEEDSNCPFFTPRSLVNSLSPSFMEFLKGLPEF

Homology

[Close]

BLAST of CmoCh18G010230 vs. ExPASy Swiss-Prot
Match: Q9LS54 (VQ motif-containing protein 20 OS=Arabidopsis thaliana OX=3702 GN=VQ20 PE=2 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 7.3e-11
Identity = 36/67 (53.73%), Postives = 44/67 (65.67%), Query Frame = 0


Query: 12  PRPPPLLLHKHSRTIRKPSPPPQL------RRPVIIYTHSPKIIHTQPKDFMALVQRLTG 71
           P PP L ++K S  I+KP  P         R PVIIYTH+P+IIHT PKDFMALVQ+LTG
Sbjct: 41  PSPPTLKVNKDSHVIKKPPSPSSFSSAAKPRHPVIIYTHTPRIIHTNPKDFMALVQKLTG 100

Query: 72  CSPPNAD 73
            +  + D
Sbjct: 101 MTHSDED 107

[Close]

BLAST of CmoCh18G010230 vs. ExPASy Swiss-Prot
Match: Q9CA36 (VQ motif-containing protein 8, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=VQ8 PE=1 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.4e-09
Identity = 47/94 (50.00%), Postives = 56/94 (59.57%), Query Frame = 0


Query: 1  MSPPKPRHIHGPRPPPLLLHKHSRTIRKPS-----PPPQLR-RPVIIYTHSPKIIHTQPK 60
          M P +   I+G RP  L L   S TI+K S     P P  R  PVIIY HSPK+IHT+ +
Sbjct: 1  MIPTRCNEINGSRPSSLKLAGESHTIKKTSSCKSKPRPHGRASPVIIYAHSPKVIHTRAE 60

Query: 61 DFMALVQRLTGCSPPNADKAPSDNNDSSSVVTEE 89
          DFMALVQRLTG    +     + +  SSSVVTEE
Sbjct: 61 DFMALVQRLTGL---DEIIRRNTSESSSSVVTEE 91

[Close]

BLAST of CmoCh18G010230 vs. ExPASy Swiss-Prot
Match: Q8LGD5 (Protein MKS1 OS=Arabidopsis thaliana OX=3702 GN=MKS1 PE=1 SV=2)

HSP 1 Score: 60.8 bits (146), Expect = 1.2e-08
Identity = 34/71 (47.89%), Postives = 42/71 (59.15%), Query Frame = 0


Query: 9  IHGPRPPPLLLHKHSRTIRKP-----------SPPPQL-RRPVIIYTHSPKIIHTQPKDF 68
          I GPRP PL +HK S  I+KP            PPP + R PV+IY  SPK++H    +F
Sbjct: 24 ICGPRPSPLSVHKDSHKIKKPPKHPAPPPNRDQPPPYIPREPVVIYAVSPKVVHATASEF 83

[Close]

BLAST of CmoCh18G010230 vs. ExPASy Swiss-Prot
Match: F4HWF9 (Nuclear speckle RNA-binding protein B OS=Arabidopsis thaliana OX=3702 GN=NSRB PE=2 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 2.0e-05
Identity = 40/119 (33.61%), Postives = 56/119 (47.06%), Query Frame = 0


Query: 4   PKPRHIHGPRPPPLLLHKHSRTIRKPSP---------PPQLRR-----------PVIIYT 63
           P+ R   GP+P PL +   S  I K  P         PPQ  +           PV IYT
Sbjct: 6   PRSRGNMGPKPTPLKVRGDSHKIIKKPPLAPPHPQPQPPQTHQQEPSQSRPPPGPVNIYT 65

Query: 64  HSPKIIHTQPKDFMALVQRLTGCSPPNADKAPSDNNDSSSVVTEEDSNCPFFTPRSLVN 103
            +P+IIHT P +FM LVQRLTG        + + ++ SSS    +D++    T   L++
Sbjct: 66  VTPRIIHTHPNNFMTLVQRLTG----QTSTSTTSSSSSSSTSEPKDTSTMVDTSHGLIS 120

[Close]

BLAST of CmoCh18G010230 vs. ExPASy TrEMBL
Match: A0A0A0KT78 (VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G609750 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 1.5e-30
Identity = 85/146 (58.22%), Postives = 94/146 (64.38%), Query Frame = 0


Query: 1   MSPPKPRHIHGPRPPPLLLHKHSRTIRKPSPPPQLRRPVIIYTHSPKIIHTQPKDFMALV 60
           MSPPK   I+GPRP PLL+H HSR IRK   P QLR+P+IIYTHSPKIIHT PKDFMALV
Sbjct: 1   MSPPKSSEINGPRPSPLLIHNHSRLIRK---PVQLRQPLIIYTHSPKIIHTHPKDFMALV 60

Query: 61  QRLTGCSPPNADKAPS-----------DNNDSSSVVTEED-----SNC------------ 119
           QRLTGC+PP     PS           DN+ SS V TEED     SNC            
Sbjct: 61  QRLTGCNPPPPLPLPSAKPSLSERNLNDNDSSSGVTTEEDINEKQSNCSVLKYSSHDVTT 120

[Close]

BLAST of CmoCh18G010230 vs. ExPASy TrEMBL
Match: A0A6J1DC48 (VQ motif-containing protein 8, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111018730 PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 2.8e-29
Identity = 91/166 (54.82%), Postives = 100/166 (60.24%), Query Frame = 0


Query: 1   MSPPKPRHIHGPRPPPLLLHKHSRTIRKPSPPPQLRRPVIIYTHSPKIIHTQPKDFMALV 60
           MSP K   I+GPRP PLL+HKHSR IRK  PPPQLR+P+IIYTHSPKIIHTQPKDFMALV
Sbjct: 1   MSPAKSCDINGPRPSPLLIHKHSRLIRK--PPPQLRQPLIIYTHSPKIIHTQPKDFMALV 60

Query: 61  QRLTGCS---PPNADKAPSDN-----NDSSSVVTEEDSNC-------------------- 119
           QRLTG +   PP+AD +  +N     NDSSSV+TEE  NC                    
Sbjct: 61  QRLTGFTPPPPPHADDSDRNNNVNFDNDSSSVLTEE-VNCGDHNHHPSYVKEVQSQSQSH 120

[Close]

BLAST of CmoCh18G010230 vs. ExPASy TrEMBL
Match: A0A5D3CFH5 (VQ motif-containing protein 8 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G001070 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 2.2e-26
Identity = 76/136 (55.88%), Postives = 93/136 (68.38%), Query Frame = 0


Query: 1   MSPPKPRHIHGPRPPPLLLHKHSRTIRKPSPPPQLRRPVIIYTHSPKIIHTQPKDFMALV 60
           MSPPK   I+G RP PLL+H  SR +RK    PQLR+P+IIYTHSPKIIHT PKDFMALV
Sbjct: 1   MSPPKSSQINGLRPSPLLIHNDSRLVRK----PQLRQPLIIYTHSPKIIHTHPKDFMALV 60

Query: 61  QRLTGCS--PPNADKAPSDNNDSSSVVTEED-----SNC-----------PFFTPRSLVN 119
           QRLTG +  PP  ++  +DN+ +S V +EED     SNC           PF +P + ++
Sbjct: 61  QRLTGFNPPPPQPERNSNDNDSTSGVTSEEDVNEKQSNCSVLKYSSDVTTPFSSP-AFLS 120

[Close]

BLAST of CmoCh18G010230 vs. ExPASy TrEMBL
Match: A0A1S3CS67 (VQ motif-containing protein 8, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103504155 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 2.2e-26
Identity = 76/136 (55.88%), Postives = 93/136 (68.38%), Query Frame = 0


Query: 1   MSPPKPRHIHGPRPPPLLLHKHSRTIRKPSPPPQLRRPVIIYTHSPKIIHTQPKDFMALV 60
           MSPPK   I+G RP PLL+H  SR +RK    PQLR+P+IIYTHSPKIIHT PKDFMALV
Sbjct: 1   MSPPKSSQINGLRPSPLLIHNDSRLVRK----PQLRQPLIIYTHSPKIIHTHPKDFMALV 60

Query: 61  QRLTGCS--PPNADKAPSDNNDSSSVVTEED-----SNC-----------PFFTPRSLVN 119
           QRLTG +  PP  ++  +DN+ +S V +EED     SNC           PF +P + ++
Sbjct: 61  QRLTGFNPPPPQPERNSNDNDSTSGVTSEEDVNEKQSNCSVLKYSSDVTTPFSSP-AFLS 120

[Close]

BLAST of CmoCh18G010230 vs. ExPASy TrEMBL
Match: W9RYA3 (VQ domain-containing protein OS=Morus notabilis OX=981085 GN=L484_015429 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 7.0e-17
Identity = 72/189 (38.10%), Postives = 91/189 (48.15%), Query Frame = 0


Query: 1   MSPPKPRHIHGPRPPPLLLHKHSRTIRKPS-----PPPQLRRPVIIYTHSPKIIHTQPKD 60
           MSP K   I+G RP PL ++K S TI KPS      PPQ  +PVIIYTHSP+IIHT+P++
Sbjct: 1   MSPEKFIKINGARPSPLKINKESHTIYKPSNHHQMNPPQRHQPVIIYTHSPRIIHTEPRN 60

Query: 61  FMALVQRLTGCSPPNADK-------------------------------APSDNNDSSSV 119
           FMA+VQ LTG S  N +K                               A SDNN+SSSV
Sbjct: 61  FMAVVQNLTGMSRSNDNKNNHKTTSSSSQQRPISSQDSQPVISNSSTSEAKSDNNESSSV 120

[Close]

BLAST of CmoCh18G010230 vs. TAIR 10
Match: AT3G18360.1 (VQ motif-containing protein )

HSP 1 Score: 68.2 bits (165), Expect = 5.2e-12
Identity = 36/67 (53.73%), Postives = 44/67 (65.67%), Query Frame = 0


Query: 12  PRPPPLLLHKHSRTIRKPSPPPQL------RRPVIIYTHSPKIIHTQPKDFMALVQRLTG 71
           P PP L ++K S  I+KP  P         R PVIIYTH+P+IIHT PKDFMALVQ+LTG
Sbjct: 41  PSPPTLKVNKDSHVIKKPPSPSSFSSAAKPRHPVIIYTHTPRIIHTNPKDFMALVQKLTG 100

Query: 72  CSPPNAD 73
            +  + D
Sbjct: 101 MTHSDED 107

[Close]

BLAST of CmoCh18G010230 vs. TAIR 10
Match: AT1G68450.1 (VQ motif-containing protein )

HSP 1 Score: 63.9 bits (154), Expect = 9.7e-11
Identity = 47/94 (50.00%), Postives = 56/94 (59.57%), Query Frame = 0


Query: 1  MSPPKPRHIHGPRPPPLLLHKHSRTIRKPS-----PPPQLR-RPVIIYTHSPKIIHTQPK 60
          M P +   I+G RP  L L   S TI+K S     P P  R  PVIIY HSPK+IHT+ +
Sbjct: 1  MIPTRCNEINGSRPSSLKLAGESHTIKKTSSCKSKPRPHGRASPVIIYAHSPKVIHTRAE 60

Query: 61 DFMALVQRLTGCSPPNADKAPSDNNDSSSVVTEE 89
          DFMALVQRLTG    +     + +  SSSVVTEE
Sbjct: 61 DFMALVQRLTGL---DEIIRRNTSESSSSVVTEE 91

[Close]

BLAST of CmoCh18G010230 vs. TAIR 10
Match: AT3G18690.1 (MAP kinase substrate 1 )

HSP 1 Score: 60.8 bits (146), Expect = 8.2e-10
Identity = 34/71 (47.89%), Postives = 42/71 (59.15%), Query Frame = 0


Query: 9  IHGPRPPPLLLHKHSRTIRKP-----------SPPPQL-RRPVIIYTHSPKIIHTQPKDF 68
          I GPRP PL +HK S  I+KP            PPP + R PV+IY  SPK++H    +F
Sbjct: 24 ICGPRPSPLSVHKDSHKIKKPPKHPAPPPNRDQPPPYIPREPVVIYAVSPKVVHATASEF 83

[Close]

BLAST of CmoCh18G010230 vs. TAIR 10
Match: AT1G21326.1 (VQ motif-containing protein )

HSP 1 Score: 55.8 bits (133), Expect = 2.7e-08
Identity = 44/119 (36.97%), Postives = 58/119 (48.74%), Query Frame = 0


Query: 4   PKPRHIHGPRPPPLLLHKHSRTIRKPSP---------PPQLRR-----------PVIIYT 63
           P+ R I GPRP PL +   S  I K  P         PPQ  +           PVIIYT
Sbjct: 6   PRSRGILGPRPIPLKVRGDSHKIIKKPPLAPPHPQPQPPQTHQQEPSQSRPPPGPVIIYT 65

Query: 64  HSPKIIHTQPKDFMALVQRLTGCSPPNADKAPSDNNDSSSVVTEEDSNCPFFTPRSLVN 103
            SP+IIHT P +FM LVQRLTG        + + ++ SSS    +D++    T   L++
Sbjct: 66  VSPRIIHTHPNNFMTLVQRLTG----KTSTSTTSSSYSSSTSAPKDASTMVDTSHGLIS 120

[Close]

BLAST of CmoCh18G010230 vs. TAIR 10
Match: AT1G21320.1 (nucleotide binding;nucleic acid binding )

HSP 1 Score: 50.1 bits (118), Expect = 1.5e-06
Identity = 40/119 (33.61%), Postives = 56/119 (47.06%), Query Frame = 0


Query: 4   PKPRHIHGPRPPPLLLHKHSRTIRKPSP---------PPQLRR-----------PVIIYT 63
           P+ R   GP+P PL +   S  I K  P         PPQ  +           PV IYT
Sbjct: 6   PRSRGNMGPKPTPLKVRGDSHKIIKKPPLAPPHPQPQPPQTHQQEPSQSRPPPGPVNIYT 65

Query: 64  HSPKIIHTQPKDFMALVQRLTGCSPPNADKAPSDNNDSSSVVTEEDSNCPFFTPRSLVN 103
            +P+IIHT P +FM LVQRLTG        + + ++ SSS    +D++    T   L++
Sbjct: 66  VTPRIIHTHPNNFMTLVQRLTG----QTSTSTTSSSSSSSTSEPKDTSTMVDTSHGLIS 120

The following BLAST results are available for this feature:

BLAST of CmoCh18G010230 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LS54	7.3e-11	53.73	VQ motif-containing protein 20 OS=Arabidopsis thaliana OX=3702 GN=VQ20 PE=2 SV=1	[more]
Q9CA36	1.4e-09	50.00	VQ motif-containing protein 8, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=...	[more]
Q8LGD5	1.2e-08	47.89	Protein MKS1 OS=Arabidopsis thaliana OX=3702 GN=MKS1 PE=1 SV=2	[more]
F4HWF9	2.0e-05	33.61	Nuclear speckle RNA-binding protein B OS=Arabidopsis thaliana OX=3702 GN=NSRB PE...	[more]

BLAST of CmoCh18G010230 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KT78	1.5e-30	58.22	VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G609750 PE=4 SV=...	[more]
A0A6J1DC48	2.8e-29	54.82	VQ motif-containing protein 8, chloroplastic OS=Momordica charantia OX=3673 GN=L...	[more]
A0A5D3CFH5	2.2e-26	55.88	VQ motif-containing protein 8 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A1S3CS67	2.2e-26	55.88	VQ motif-containing protein 8, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC...	[more]
W9RYA3	7.0e-17	38.10	VQ domain-containing protein OS=Morus notabilis OX=981085 GN=L484_015429 PE=4 SV...	[more]

BLAST of CmoCh18G010230 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G18360.1	5.2e-12	53.73	VQ motif-containing protein	[more]
AT1G68450.1	9.7e-11	50.00	VQ motif-containing protein	[more]
AT3G18690.1	8.2e-10	47.89	MAP kinase substrate 1	[more]
AT1G21326.1	2.7e-08	36.97	VQ motif-containing protein	[more]
AT1G21320.1	1.5e-06	33.61	nucleotide binding;nucleic acid binding	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008889	VQ	PFAM	PF05678	VQ	coord: 43..69 e-value: 2.9E-12 score: 45.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..37
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 65..91
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 71..91
IPR039607	VQ motif-containing protein 8/17/18/20/21/25	PANTHER	PTHR33143	F16F4.1 PROTEIN-RELATED	coord: 7..89
IPR039833	VQ motif-containing protein 8, chloroplastic	PANTHER	PTHR33143:SF42	VQ MOTIF-CONTAINING PROTEIN 8, CHLOROPLASTIC	coord: 7..89

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh18G010230.1	CmoCh18G010230.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000463	maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
cellular_component	GO:0070545	PeBoW complex
cellular_component	GO:0030687	preribosome, large subunit precursor
molecular_function	GO:0043021	ribonucleoprotein complex binding