CmoCh18G008110 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh18G008110
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
Descriptionserine/arginine-rich splicing factor RSZ21
LocationCmo_Chr18: 9538561 .. 9543264 (-)
RNA-Seq ExpressionCmoCh18G008110
SyntenyCmoCh18G008110
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGGAACATCACAGGTTAGGTTATTAGGTCATACGAACACCCATAATTTCGACATGTTATACTATTCGTTCAACGTTTTAGTGTTTTTATTTTATTTTATTTTAATTTCAAGAATAATTTTGAATATATATTTTTTTAAATGAAGGAAAAAATTTAAAGGTATTTTAATAATTTTCCAATTATTTTTTTTGTAAATTTGGAAAGAGGTAATTTATTTTGTTGAGTGGGGCAAAAATGTAATTGCAATTATTTGTGGATTAGGCGAGGGAGTTTGATCTGACATCCAACAAACACACAGCGAATGGCGTCTTTAAATTTGAAATTACGACAACCGACAGCTCCATTCCCACGTCGTACAAAGTCCGACATGTCGTACACCATTAGATTTATAACCACGTGCTTCTTTCTCTCTTTTTTAACTCAAGATAATAAAAACAATATGGATAAGGAATAAATTAAAGCGTACACTCTGATACCAAATGATATGAAATCAACCTAAGAAAAAACTCTGATACTAAATGATAGGTAGGATTCAGATTACGCGTTGTTCATCGAATATCTCAAGACAAAAATACTTGTTTAAGATTCGAATAACTTAACAAGCAAGATCGATCACGTCTAACTCGAATGATTCGAAAAATATAATTTAAACTACCTATAATTGCAAAGAAACGAGCTCTTGGCGAAAGAAAGAGGTAAGAAAAATATCTCGATTATCTTGTTGATCAGATGTCGTAAGACAATAACACTAGATTGAGATTCGAATCACTCCATAAGAAAGATCGATCATGTCAAATTTGAATGATTCTAACCATGCAATCTAAACGACATAAAATTGGAAAAAAATGAAAAAAAAAATATTTTTACTATTTTTTTTTAAAGTATGAGTTTATATAGTCTCAAAATCAAAATGAAAACCAGTGTTCTCAGTATTTTTTTAATATTTTTAAATTAAATTATTTTTAAAAAGCACACAAATTACATTAAATAAACTCGGCCCATTGGGCCGTTATATGTTTGTTGGGCCCAATTTAGTAATGACTTGGCCCAATATGGCGACAATTAGAAGATCGAACTCTCATCACCGGACAGACTCCCTTCTGCAGACTTCCGAGCATCGGAGCTCTGCGACTACGGGCAGCGCCGTTTTCCTACATTTTCACCGGCTGATCTGTTCGTAATCTACGACGATCCGGGGAGAATTTTTTTTTTTCTAGGTAGGCTTTAGCTTTGCGATCAACATGAACACAACCCTAATTCTTCTCCATTTCTTCAACGATTATTGTAACCCTTAATTAGCGCTTCGATTTTGTTTTTCTTCCTCCATTGTATGTGAACTCTGATTCATGTCTGTTTTCTTGTTTTTTTAGGTCTTGAATGTTTTCCTGGGATTGCTTACTCGTTCTATTTTCAGGTGGTTTTTAACTTATACATTACAATGACTCGAGTTTACATTGGTAATCTGGATCCACGCGTTTCAGAGAGGGATCTTGAAGATGAATTTCGAATGTTCGGTGTTCTTAGGAGGTGATTTCCGTTTGAAATTAGAGGCAGCCTTCATATATATGTCTTAAATTGAAACATTTTGGACGAGATATTTACCGAATCGGTTGAAATGGGAAATATTCATGGGTTCTTTCTGTATTGTACATAGTTTTTTTATGGCGCTAAGCTATCTATCCATGGCGTTTTCACATGGCCAAAGTTAGATATTCTGGCACTGGGCAGGGGATGAAGAAAGCCTTACTCATTGAATTTCATAGTGTTTGTTCTTAATCTGAGTACTATTGAAGTTGGCTGGTTTCAGCCTGTCAGCAATGGGAGTTCAGTAGTTGGGCTTTGCTTTTTACTTAAGACCCTTATCTTCCTTCTCGTCAGTACTATTTGTTTATGAAACTGAGACAAACTCTTTGAGATATGTCCTCTAAAGTTTGCTGATGGCTATCCTTGAGATCGGTGGAGCCAATGTGCATGCCTCATATATTACCTCGACAGAATGCCAGATGTTCTACGGTCTATTTCGTTGGTAGAATGGAAAGAATTAGGCGAAGAGGGACCAGTGGGTAATGAATGGGAAGATCGAAAAGTTGGAAGAAAAAAGGAATTTTTGGTTAGACGTATGGAATTAGCTAAGCATTTTATTCGAACAAATATAGAACCCGAATGGATGGTTTTATGTCTATTACCTGTTCTTCCTCCCGAGTTGAGTCTGATCATTCAGATATGCTTCATGGACATTTATTTCGTAATTGCATATAAACTATTAAGATGAGCTAGCTTTAATTTGAAAGAATATATATGTTCCCTTGTTTCTTGGTCTTAAGCTGCATTCTGAATTATTGGTCTTTGAATAAAATAATGCAGTGTGTGGGTTGCTAGAAGGCCTCCAGGATATGCATTTATTGAGTTTGATGATCGCAGGGATGCTCTAGATGCAATACAGGCATTGGATGGTCAGTTTTAAAATATATTTCTTGTACTTGTTGCTATCAAGTTGTGCCTTTCATTCCTTCTATCAAATGATATTTGTTTTCATATGTATATATATGCAGCCTTTTCTTGTATTATCAATCTACTTTCATTACGTATTTTTTCCTCAGCTTTATCTGCCATCTAGTTTTCATTGGCGCAGTGAACTAAAAATTTATAATAGATCTAGTTTAATATCAACGTGACCGCAAAACTGAACTAAATCTTGGAAATTATAGTCGATCCTTAATCCAAGTCAAATGTGATCGTTTTCTGTAAGTTCCTAGGGCTTATAGGATGACCCCTTATCCTTCATTCTTATTTTTATTTCCTTGAGTTAAGTCTATCTTATCTTTTATGTGTGATTTTTTTGGGTTCTTATAATAGGGAAAAATGGTTGGCGTGTGGAGCTTTCTCACAACTCCAAAGGCGGGGGAGGTGGTGGTGGTGGTCGTTGTGGCCGTGGTGGTGGTGGTGGTGGTGGTGGTGATGATTTGAAATGTTATGAATGTGGTGAACCTGGTCATTTTGCTCGAGAGTGTCGTTCCCGTGGGGGCTCACGAGGCATTGGAGGTGGCTTGCGTCGTAGTCCTTCTCCTCGGCGCCGCAGGAGTCCAAGTTATGAAAGATATGGTCGCAGGTGCATCAAAGCTTTGTTTGTGTTTTTAAACACACCGAGTTATCTAAACCAACAAGTGGTTTCATATAAAGTTTAGGTTTTGATGTTTTATCACACTTTTACCTTTTCCCTTTTCCATGTAGGAGTAACAGTCCTCGTGGTAAAAGATCTCCACGACGTCGCAGCATTACACCTCCTAAGCGTGGTCGAAGCTACAGCAGATCTCCTCCACTCCGTCATGCTCGCCATGCTTCACCTTATGCTAACGGGTATGCCTTATTCCTAATAAATGAAAACTATTCACTAAAACTAACTTAATTGCCTTAATTGGGTGTTTTTGTTCACATTAGCCTTCGGTAATTATTGGGAATTAGTGCAGTAGACCAAAGCTATCTTTGGGGCCTATTACGTCTCCCAAAATTAAGTGTGAAATGACTCTCTACTACTAATTAATGTCAACACATACTTGATTGAGCAATATATTCCATAACTTCTTTAGATACAAATGCATCCATCTTAGAGCTGCATGATTATCATTATCGCAGAGATTGATCCTGGAATCAAGGATGATGCTGTGCTGGTAGAACTTAGATGATGGTGTTTCTGCTATACTGTAGTTCTATTAGGAATTGTGGAATGAGGCGGAATCATGTAGTTAAGTTCGTCTTTGACAATTGGTTCTCTTTGAAACCTGGATTTGGATGGATGTCTACCAAGTGTTTTAAGCCACCAAATGGCGTTCTGTCTGGAACCGTTTTGTGTTGGCTCTCTTCTAGACCCGCTGAAACTCGGAGGTCGCGTTCTTGCTTTCAAAATGATATCTATTCCCTAGAATTTTATACATACCTCTCTCTATATGTTTATTAGTGTTTCTTTTTCATTGGATGTCCCCAAAGATTTATCTGTTGGCTGTTTTTTTTTTTTTTTTGAGGTGTGATTTTCGGCATAAATCGCATCGTTACTCAGCTACCTGCATCTTTATGCATCACGGTTCTCAATATCTGCTCTGCTCCTCAATCATCTTCTTGTTACTGCAACTGGTTGCATGCTGTTTGTATTGCACTCTTACTGCAAGAAGGCTGCCTATATAGTTAATCCTTTTTAGCTGGTTGAAGACGATGAAGCTGTTTTCTTGTGATTTTCTGCTCATCATCTTCTTGTCTTCAATTGCATGCACGTAGCTATCGTGAGCGATTCTACTCGTTTTATAACATTGGCATCTTGTGAGCTTCAACTTGTTTCTTGCTTCCACAACTTCTGCCTTGCTCCTTCAATTGCACTTCATAAGTTGGAGACCAACCTCCAGTGATTTGCTTTTAGATGGTGAGGCAGCTATCTTCTTGGTTCCCGGCTCTGTTGTATGTTTAACCCTCATTTGTTCTTGGTTAGAAGGTCGAGGTGGGAATTGGAATGCTTATTCATATTCTTTGACTGTCTGTTCTTTGTTCTTTGCGTACATAAACTTGCCAAACTGACATAAACAAAGCAGACATAAGAAACATTGTTATTTTGGATCATTTATCTGTTTGGTTTTGGATATCGTGTAAGTTTTAATTTTAATTTGTTCTTGATGTTCTAATATGTATTGTTGTTTACATCATTGGGAGTTCAACA

mRNA sequence

ATGTGGAACATCACAGACTTCCGAGCATCGGAGCTCTGCGACTACGGGCAGCGCCGTTTTCCTACATTTTCACCGGCTGATCTGTTCGTAATCTACGACGATCCGGGGAGAATTTTTTTTTTTCTAGGTCTTGAATGTTTTCCTGGGATTGCTTACTCGTTCTATTTTCAGGTGGTTTTTAACTTATACATTACAATGACTCGAGTTTACATTGGTAATCTGGATCCACGCGTTTCAGAGAGGGATCTTGAAGATGAATTTCGAATGTTCGGTGTTCTTAGGAGTGTGTGGGTTGCTAGAAGGCCTCCAGGATATGCATTTATTGAGTTTGATGATCGCAGGGATGCTCTAGATGCAATACAGGCATTGGATGGGAAAAATGGTTGGCGTGTGGAGCTTTCTCACAACTCCAAAGGCGGGGGAGGTGGTGGTGGTGGTCGTTGTGGCCGTGGTGGTGGTGGTGGTGGTGGTGGTGATGATTTGAAATGTTATGAATGTGGTGAACCTGGTCATTTTGCTCGAGAGTGTCGTTCCCGTGGGGGCTCACGAGGCATTGGAGGTGGCTTGCGTCGTAGTCCTTCTCCTCGGCGCCGCAGGAGTCCAAGTTATGAAAGATATGGTCGCAGGAGTAACAGTCCTCGTGGTAAAAGATCTCCACGACGTCGCAGCATTACACCTCCTAAGCGTGGTCGAAGCTACAGCAGATCTCCTCCACTCCGTCATGCTCGCCATGCTTCACCTTATGCTAACGGAGATTGATCCTGGAATCAAGGATGATGCTGTGCTGGTAGAACTTAGATGATGGTGTTTCTGCTATACTGTAGTTCTATTAGGAATTGTGGAATGAGGCGGAATCATGTAGTTAAGTTCGTCTTTGACAATTGGTTCTCTTTGAAACCTGGATTTGGATGGATGTCTACCAAGTGTTTTAAGCCACCAAATGGCGTTCTGTCTGGAACCGTTTTGTGTTGGCTCTCTTCTAGACCCGCTGAAACTCGGAGGTCGCGTTCTTGCTTTCAAAATGATATCTATTCCCTAGAATTTTATACATACCTCTCTCTATATGTTTATTAGTGTTTCTTTTTCATTGGATGTCCCCAAAGATTTATCTGTTGGCTGTTTTTTTTTTTTTTTTGAGGTGTGATTTTCGGCATAAATCGCATCGTTACTCAGCTACCTGCATCTTTATGCATCACGGTTCTCAATATCTGCTCTGCTCCTCAATCATCTTCTTGTTACTGCAACTGGTTGCATGCTGTTTGTATTGCACTCTTACTGCAAGAAGGCTGCCTATATAGTTAATCCTTTTTAGCTGGTTGAAGACGATGAAGCTGTTTTCTTGTGATTTTCTGCTCATCATCTTCTTGTCTTCAATTGCATGCACGTAGCTATCGTGAGCGATTCTACTCGTTTTATAACATTGGCATCTTGTGAGCTTCAACTTGTTTCTTGCTTCCACAACTTCTGCCTTGCTCCTTCAATTGCACTTCATAAGTTGGAGACCAACCTCCAGTGATTTGCTTTTAGATGGTGAGGCAGCTATCTTCTTGGTTCCCGGCTCTGTTGTATGTTTAACCCTCATTTGTTCTTGGTTAGAAGGTCGAGGTGGGAATTGGAATGCTTATTCATATTCTTTGACTGTCTGTTCTTTGTTCTTTGCGTACATAAACTTGCCAAACTGACATAAACAAAGCAGACATAAGAAACATTGTTATTTTGGATCATTTATCTGTTTGGTTTTGGATATCGTGTAAGTTTTAATTTTAATTTGTTCTTGATGTTCTAATATGTATTGTTGTTTACATCATTGGGAGTTCAACA

Coding sequence (CDS)

ATGTGGAACATCACAGACTTCCGAGCATCGGAGCTCTGCGACTACGGGCAGCGCCGTTTTCCTACATTTTCACCGGCTGATCTGTTCGTAATCTACGACGATCCGGGGAGAATTTTTTTTTTTCTAGGTCTTGAATGTTTTCCTGGGATTGCTTACTCGTTCTATTTTCAGGTGGTTTTTAACTTATACATTACAATGACTCGAGTTTACATTGGTAATCTGGATCCACGCGTTTCAGAGAGGGATCTTGAAGATGAATTTCGAATGTTCGGTGTTCTTAGGAGTGTGTGGGTTGCTAGAAGGCCTCCAGGATATGCATTTATTGAGTTTGATGATCGCAGGGATGCTCTAGATGCAATACAGGCATTGGATGGGAAAAATGGTTGGCGTGTGGAGCTTTCTCACAACTCCAAAGGCGGGGGAGGTGGTGGTGGTGGTCGTTGTGGCCGTGGTGGTGGTGGTGGTGGTGGTGGTGATGATTTGAAATGTTATGAATGTGGTGAACCTGGTCATTTTGCTCGAGAGTGTCGTTCCCGTGGGGGCTCACGAGGCATTGGAGGTGGCTTGCGTCGTAGTCCTTCTCCTCGGCGCCGCAGGAGTCCAAGTTATGAAAGATATGGTCGCAGGAGTAACAGTCCTCGTGGTAAAAGATCTCCACGACGTCGCAGCATTACACCTCCTAAGCGTGGTCGAAGCTACAGCAGATCTCCTCCACTCCGTCATGCTCGCCATGCTTCACCTTATGCTAACGGAGATTGA

Protein sequence

MWNITDFRASELCDYGQRRFPTFSPADLFVIYDDPGRIFFFLGLECFPGIAYSFYFQVVFNLYITMTRVYIGNLDPRVSERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGGGGGGGGRCGRGGGGGGGGDDLKCYECGEPGHFARECRSRGGSRGIGGGLRRSPSPRRRRSPSYERYGRRSNSPRGKRSPRRRSITPPKRGRSYSRSPPLRHARHASPYANGD
Homology
[Close]
BLAST of CmoCh18G008110 vs. ExPASy Swiss-Prot
Match: O81127 (Serine/arginine-rich splicing factor RSZ21 OS=Arabidopsis thaliana OX=3702 GN=RSZ21 PE=1 SV=1)

HSP 1 Score: 240.0 bits (611), Expect = 3.0e-62
Identity = 139/199 (69.85%), Postives = 150/199 (75.38%), Query Frame = 0 

Query: 66  MTRVYIGNLDPRVSERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDG 125
           MTRVY+GNLDPRV+ER+LEDEF+ FGVLR+VWVARRPPGYAF+EFDD RDALDAI ALD 
Sbjct: 1   MTRVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRPPGYAFLEFDDERDALDAISALDR 60

Query: 126 KNGWRVELSHNSKGGGGGGGGRCGRGGGGGGGGDDLKCYECGEPGHFARECRSRGGSRGI 185
           KNGWRVELSH  KGG GGGGGR        GG +D KCYECGE GHFARECR     RG 
Sbjct: 61  KNGWRVELSHKDKGGRGGGGGR-------RGGIEDSKCYECGELGHFARECR-----RGR 120

Query: 186 GGGLRRSPSPRRRRSPSYERYGRRSNSPRGKRS-PRRRSITPPKRGRSYSRSPPLRHAR- 245
           G   RRSPSPRRRRSP Y  Y RRS SPRG+RS PRRRS+TPP+RGRSYSRSPP R +R 
Sbjct: 121 GSVRRRSPSPRRRRSPDY-GYARRSISPRGRRSPPRRRSVTPPRRGRSYSRSPPYRGSRR 180

Query: 246 -----------HASPYANG 252
                        SPYANG
Sbjct: 181 DSPRRRDSPYGRRSPYANG 186

[Close]
BLAST of CmoCh18G008110 vs. ExPASy Swiss-Prot
Match: Q9SJA6 (Serine/arginine-rich splicing factor RSZ22A OS=Arabidopsis thaliana OX=3702 GN=RSZ22A PE=1 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 3.4e-58
Identity = 130/192 (67.71%), Postives = 146/192 (76.04%), Query Frame = 0 

Query: 66  MTRVYIGNLDPRVSERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDG 125
           M+RVY+GNLDPRV+ER+LEDEFR FGV+RSVWVARRPPGYAF++F+D RDA DAI+ +DG
Sbjct: 1   MSRVYVGNLDPRVTERELEDEFRSFGVIRSVWVARRPPGYAFLDFEDSRDARDAIREVDG 60

Query: 126 KNGWRVELSHNSKGGGGGGGGRCGRGGGGGGGGDDLKCYECGEPGHFARECRSRGGSRGI 185
           KNGWRVE SHN  GGGG GGGR G  GG G GG DLKCYECGE GHFARECRSRGGS   
Sbjct: 61  KNGWRVEQSHNRGGGGGRGGGRGGGDGGRGRGGSDLKCYECGESGHFARECRSRGGS--- 120

Query: 186 GGGLRRSPS-----PRRRRSPSYERYGRRSNSPRGKRSPRRRSITPPKRGRSYSRSPPLR 245
            GG RRS S     PR R+SP+Y   GRRS SPR +  P  R  +P  RGR+YSRSPP  
Sbjct: 121 -GGRRRSRSRSRSPPRYRKSPTYG--GRRSYSPRARSPPPPRRRSPSPRGRNYSRSPPPY 180

Query: 246 HARHASPYANGD 253
            AR   PYANG+
Sbjct: 181 RARDEVPYANGN 186

[Close]
BLAST of CmoCh18G008110 vs. ExPASy Swiss-Prot
Match: O81126 (Serine/arginine-rich splicing factor RSZ22 OS=Arabidopsis thaliana OX=3702 GN=RSZ22 PE=1 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 9.9e-58
Identity = 137/198 (69.19%), Postives = 152/198 (76.77%), Query Frame = 0 

Query: 66  MTRVYIGNLDPRVSERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDG 125
           M+RVY+GNLDPRV+ER+LEDEFR FGV+RSVWVARRPPGYAF++F+D RDA DAI+ALDG
Sbjct: 1   MSRVYVGNLDPRVTERELEDEFRAFGVVRSVWVARRPPGYAFLDFEDPRDARDAIRALDG 60

Query: 126 KNGWRVELSHN--SKGGGGGGGGRCGRGGG-GGGGGDDLKCYECGEPGHFARECRSRGGS 185
           KNGWRVE SHN   +GGGG GG R G GGG GG GG DLKCYECGE GHFARECR+RGG+
Sbjct: 61  KNGWRVEQSHNRGERGGGGRGGDRGGGGGGRGGRGGSDLKCYECGETGHFARECRNRGGT 120

Query: 186 RGIGGGLRRSPS-----PRRRRSPSYERYGRRSNSPRGKR--SPRRRSIT-PPKRGRSYS 245
                G RRS S     PR RRSPS   YGRRS SPR +    PRRRS + PP RGRSYS
Sbjct: 121 -----GRRRSKSRSRTPPRYRRSPS---YGRRSYSPRARSPPPPRRRSPSPPPARGRSYS 180

Query: 246 RSPPLRHARHASPYANGD 253
           RSPP   AR   PYANG+
Sbjct: 181 RSPPPYRAREEVPYANGN 190

[Close]
BLAST of CmoCh18G008110 vs. ExPASy Swiss-Prot
Match: Q69KL9 (Serine/arginine-rich splicing factor RSZ21A OS=Oryza sativa subsp. japonica OX=39947 GN=RSZ21A PE=2 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 9.6e-53
Identity = 123/190 (64.74%), Postives = 137/190 (72.11%), Query Frame = 0 

Query: 66  MTRVYIGNLDPRVSERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDG 125
           M RVY+GNLDPRV+ R+LEDEFR+FGVLRSVWVAR+PPG+AFI+FDDRRDA DAI+ +DG
Sbjct: 1   MARVYVGNLDPRVTARELEDEFRVFGVLRSVWVARKPPGFAFIDFDDRRDAQDAIRDIDG 60

Query: 126 KNGWRVELSHNSKGGGGGGGGRCGRGGGGGGGGDDLKCYECGEPGHFARECRSRGGSRGI 185
           KNGWRVELS N+           GRGG    G  + KCYECGE GHFARECR R GS G+
Sbjct: 61  KNGWRVELSRNASS---------GRGGRDRYGSSESKCYECGETGHFARECRLRIGSGGL 120

Query: 186 GGGLRRSPSPRRRRSPSYER---YGRRSNSPRGKRSPRRRSITPPKRGRSYSRSPPLRHA 245
           G G RRS S  R RSP Y R   YGRRS SP G RSPRRRS++ P R RSYSRSP     
Sbjct: 121 GSGRRRSRSRSRSRSPRYRRSPSYGRRSYSPAG-RSPRRRSVS-PARARSYSRSPQYNRG 179

Query: 246 RHASP-YANG 252
           R  SP Y NG
Sbjct: 181 RDESPAYDNG 179

[Close]
BLAST of CmoCh18G008110 vs. ExPASy Swiss-Prot
Match: Q6K4N0 (Serine/arginine-rich splicing factor RSZ21 OS=Oryza sativa subsp. japonica OX=39947 GN=RSZP21 PE=2 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 3.6e-52
Identity = 120/189 (63.49%), Postives = 138/189 (73.02%), Query Frame = 0 

Query: 66  MTRVYIGNLDPRVSERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDG 125
           M R+Y+GNLDPRV+  +LEDEFR+FGVLRSVWVAR+PPG+AFI+FDD+RDA DA++ LDG
Sbjct: 1   MARLYVGNLDPRVTSGELEDEFRVFGVLRSVWVARKPPGFAFIDFDDKRDAEDALRDLDG 60

Query: 126 KNGWRVELSHNSKGGGGGGGGRCGRGGGGGGGGDDLKCYECGEPGHFARECRSRGGSRGI 185
           KNGWRVELS NS            RGG    GG ++KCYECGE GHFARECR R G  G+
Sbjct: 61  KNGWRVELSRNSS----------SRGGRDRHGGSEMKCYECGETGHFARECRLRIGPGGL 120

Query: 186 GGGLRRSPSPRRRRSPSYER---YGRRSNSPRGKRSPRRRSITPPKRGRSYSRSPPLRHA 245
           G G RRS S  R RSP Y +   YGRRS SPR  RSPRRRS++ P RGRSYSRSP     
Sbjct: 121 GSGKRRSRSRSRSRSPQYRKSPTYGRRSYSPR-DRSPRRRSVS-PVRGRSYSRSP---RG 174

Query: 246 RHASPYANG 252
           R  SPYA+G
Sbjct: 181 RGGSPYADG 174

[Close]
BLAST of CmoCh18G008110 vs. ExPASy TrEMBL
Match: A0A6J1G1N9 (serine/arginine-rich splicing factor RSZ21-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111449845 PE=4 SV=1)

HSP 1 Score: 367.9 bits (943), Expect = 3.5e-98
Identity = 187/187 (100.00%), Postives = 187/187 (100.00%), Query Frame = 0 

Query: 66  MTRVYIGNLDPRVSERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDG 125
           MTRVYIGNLDPRVSERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDG
Sbjct: 1   MTRVYIGNLDPRVSERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDG 60

Query: 126 KNGWRVELSHNSKGGGGGGGGRCGRGGGGGGGGDDLKCYECGEPGHFARECRSRGGSRGI 185
           KNGWRVELSHNSKGGGGGGGGRCGRGGGGGGGGDDLKCYECGEPGHFARECRSRGGSRGI
Sbjct: 61  KNGWRVELSHNSKGGGGGGGGRCGRGGGGGGGGDDLKCYECGEPGHFARECRSRGGSRGI 120

Query: 186 GGGLRRSPSPRRRRSPSYERYGRRSNSPRGKRSPRRRSITPPKRGRSYSRSPPLRHARHA 245
           GGGLRRSPSPRRRRSPSYERYGRRSNSPRGKRSPRRRSITPPKRGRSYSRSPPLRHARHA
Sbjct: 121 GGGLRRSPSPRRRRSPSYERYGRRSNSPRGKRSPRRRSITPPKRGRSYSRSPPLRHARHA 180

Query: 246 SPYANGD 253
           SPYANGD
Sbjct: 181 SPYANGD 187

[Close]
BLAST of CmoCh18G008110 vs. ExPASy TrEMBL
Match: A0A1S3BEJ4 (serine/arginine-rich splicing factor RSZ21 OS=Cucumis melo OX=3656 GN=LOC103489020 PE=4 SV=1)

HSP 1 Score: 345.5 bits (885), Expect = 1.9e-91
Identity = 178/187 (95.19%), Postives = 180/187 (96.26%), Query Frame = 0 

Query: 66  MTRVYIGNLDPRVSERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDG 125
           MTRVYIGNLDPRV+ERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDG
Sbjct: 1   MTRVYIGNLDPRVTERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDG 60

Query: 126 KNGWRVELSHNSKGGGGGGGGRCGRGGGGGGGGDDLKCYECGEPGHFARECRSRGGSRGI 185
           KNGWRVELSHNSKGGGGGGG R    GGGGGGGDDLKCYECGEPGHFARECRSRGGSRG+
Sbjct: 61  KNGWRVELSHNSKGGGGGGGRRGRGAGGGGGGGDDLKCYECGEPGHFARECRSRGGSRGV 120

Query: 186 GGGLRRSPSPRRRRSPSYERYGRRSNSPRGKRSPRRRSITPPKRGRSYSRSPPLRHARHA 245
           GGGLRRSPSPRRRRSPSYERYGRRSNSPRGKRSPRRRSITPPKRGRSYSRSPP RHAR A
Sbjct: 121 GGGLRRSPSPRRRRSPSYERYGRRSNSPRGKRSPRRRSITPPKRGRSYSRSPPYRHARRA 180

Query: 246 SPYANGD 253
           SPYANGD
Sbjct: 181 SPYANGD 187

[Close]
BLAST of CmoCh18G008110 vs. ExPASy TrEMBL
Match: A0A5D3CUM7 (Serine/arginine-rich splicing factor RSZ21 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G00890 PE=4 SV=1)

HSP 1 Score: 343.2 bits (879), Expect = 9.2e-91
Identity = 177/186 (95.16%), Postives = 179/186 (96.24%), Query Frame = 0 

Query: 66  MTRVYIGNLDPRVSERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDG 125
           MTRVYIGNLDPRV+ERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDG
Sbjct: 1   MTRVYIGNLDPRVTERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDG 60

Query: 126 KNGWRVELSHNSKGGGGGGGGRCGRGGGGGGGGDDLKCYECGEPGHFARECRSRGGSRGI 185
           KNGWRVELSHNSKGGGGGGG R    GGGGGGGDDLKCYECGEPGHFARECRSRGGSRG+
Sbjct: 61  KNGWRVELSHNSKGGGGGGGRRGRGAGGGGGGGDDLKCYECGEPGHFARECRSRGGSRGV 120

Query: 186 GGGLRRSPSPRRRRSPSYERYGRRSNSPRGKRSPRRRSITPPKRGRSYSRSPPLRHARHA 245
           GGGLRRSPSPRRRRSPSYERYGRRSNSPRGKRSPRRRSITPPKRGRSYSRSPP RHAR A
Sbjct: 121 GGGLRRSPSPRRRRSPSYERYGRRSNSPRGKRSPRRRSITPPKRGRSYSRSPPYRHARRA 180

Query: 246 SPYANG 252
           SPYANG
Sbjct: 181 SPYANG 186

[Close]
BLAST of CmoCh18G008110 vs. ExPASy TrEMBL
Match: A0A6J1G1L4 (serine/arginine-rich splicing factor RSZ21-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111449845 PE=4 SV=1)

HSP 1 Score: 341.3 bits (874), Expect = 3.5e-90
Identity = 174/174 (100.00%), Postives = 174/174 (100.00%), Query Frame = 0 

Query: 79  SERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSK 138
           SERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSK
Sbjct: 12  SERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSK 71

Query: 139 GGGGGGGGRCGRGGGGGGGGDDLKCYECGEPGHFARECRSRGGSRGIGGGLRRSPSPRRR 198
           GGGGGGGGRCGRGGGGGGGGDDLKCYECGEPGHFARECRSRGGSRGIGGGLRRSPSPRRR
Sbjct: 72  GGGGGGGGRCGRGGGGGGGGDDLKCYECGEPGHFARECRSRGGSRGIGGGLRRSPSPRRR 131

Query: 199 RSPSYERYGRRSNSPRGKRSPRRRSITPPKRGRSYSRSPPLRHARHASPYANGD 253
           RSPSYERYGRRSNSPRGKRSPRRRSITPPKRGRSYSRSPPLRHARHASPYANGD
Sbjct: 132 RSPSYERYGRRSNSPRGKRSPRRRSITPPKRGRSYSRSPPLRHARHASPYANGD 185

[Close]
BLAST of CmoCh18G008110 vs. ExPASy TrEMBL
Match: A0A6J1KZV2 (serine/arginine-rich splicing factor RSZ21-like OS=Cucurbita maxima OX=3661 GN=LOC111497790 PE=4 SV=1)

HSP 1 Score: 339.3 bits (869), Expect = 1.3e-89
Identity = 178/188 (94.68%), Postives = 180/188 (95.74%), Query Frame = 0 

Query: 66  MTRVYIGNLDPRVSERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDG 125
           MTRVYIGNLDPRV+ER+LEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDG
Sbjct: 1   MTRVYIGNLDPRVTERELEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDG 60

Query: 126 KNGWRVELSHNSKGGGGGGGGRCGRGGGGGGGGDDLKCYECGEPGHFARECRSRGGSRGI 185
           KNGWRVELSHNSKGGGGGGG R   GGGGGGGGDDLKCYECGEPGHFARECRSRGGSRG 
Sbjct: 61  KNGWRVELSHNSKGGGGGGGRRGRGGGGGGGGGDDLKCYECGEPGHFARECRSRGGSRGA 120

Query: 186 GGGLRRSPSPRRRRSPSYERYGRRSNSPRGKRS-PRRRSITPPKRGRSYSRSPPLRHARH 245
           GGGLRRSPSPRRRRSPSYERYGRRSNSPRGKRS PRRRSITPPKRGRSYSRSPP RHAR 
Sbjct: 121 GGGLRRSPSPRRRRSPSYERYGRRSNSPRGKRSPPRRRSITPPKRGRSYSRSPPPRHARR 180

Query: 246 ASPYANGD 253
           ASPYANGD
Sbjct: 181 ASPYANGD 188

[Close]
BLAST of CmoCh18G008110 vs. TAIR 10
Match: AT1G23860.1 (RS-containing zinc finger protein 21 )

HSP 1 Score: 240.0 bits (611), Expect = 2.1e-63
Identity = 139/199 (69.85%), Postives = 150/199 (75.38%), Query Frame = 0 

Query: 66  MTRVYIGNLDPRVSERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDG 125
           MTRVY+GNLDPRV+ER+LEDEF+ FGVLR+VWVARRPPGYAF+EFDD RDALDAI ALD 
Sbjct: 1   MTRVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRPPGYAFLEFDDERDALDAISALDR 60

Query: 126 KNGWRVELSHNSKGGGGGGGGRCGRGGGGGGGGDDLKCYECGEPGHFARECRSRGGSRGI 185
           KNGWRVELSH  KGG GGGGGR        GG +D KCYECGE GHFARECR     RG 
Sbjct: 61  KNGWRVELSHKDKGGRGGGGGR-------RGGIEDSKCYECGELGHFARECR-----RGR 120

Query: 186 GGGLRRSPSPRRRRSPSYERYGRRSNSPRGKRS-PRRRSITPPKRGRSYSRSPPLRHAR- 245
           G   RRSPSPRRRRSP Y  Y RRS SPRG+RS PRRRS+TPP+RGRSYSRSPP R +R 
Sbjct: 121 GSVRRRSPSPRRRRSPDY-GYARRSISPRGRRSPPRRRSVTPPRRGRSYSRSPPYRGSRR 180

Query: 246 -----------HASPYANG 252
                        SPYANG
Sbjct: 181 DSPRRRDSPYGRRSPYANG 186

[Close]
BLAST of CmoCh18G008110 vs. TAIR 10
Match: AT1G23860.2 (RS-containing zinc finger protein 21 )

HSP 1 Score: 240.0 bits (611), Expect = 2.1e-63
Identity = 139/199 (69.85%), Postives = 150/199 (75.38%), Query Frame = 0 

Query: 66  MTRVYIGNLDPRVSERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDG 125
           MTRVY+GNLDPRV+ER+LEDEF+ FGVLR+VWVARRPPGYAF+EFDD RDALDAI ALD 
Sbjct: 1   MTRVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRPPGYAFLEFDDERDALDAISALDR 60

Query: 126 KNGWRVELSHNSKGGGGGGGGRCGRGGGGGGGGDDLKCYECGEPGHFARECRSRGGSRGI 185
           KNGWRVELSH  KGG GGGGGR        GG +D KCYECGE GHFARECR     RG 
Sbjct: 61  KNGWRVELSHKDKGGRGGGGGR-------RGGIEDSKCYECGELGHFARECR-----RGR 120

Query: 186 GGGLRRSPSPRRRRSPSYERYGRRSNSPRGKRS-PRRRSITPPKRGRSYSRSPPLRHAR- 245
           G   RRSPSPRRRRSP Y  Y RRS SPRG+RS PRRRS+TPP+RGRSYSRSPP R +R 
Sbjct: 121 GSVRRRSPSPRRRRSPDY-GYARRSISPRGRRSPPRRRSVTPPRRGRSYSRSPPYRGSRR 180

Query: 246 -----------HASPYANG 252
                        SPYANG
Sbjct: 181 DSPRRRDSPYGRRSPYANG 186

[Close]
BLAST of CmoCh18G008110 vs. TAIR 10
Match: AT1G23860.4 (RS-containing zinc finger protein 21 )

HSP 1 Score: 233.0 bits (593), Expect = 2.6e-61
Identity = 136/199 (68.34%), Postives = 147/199 (73.87%), Query Frame = 0 

Query: 66  MTRVYIGNLDPRVSERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDG 125
           MTRVY+GNLDPRV+ER+LEDEF+ FGVLR+VWVARRPPGYAF+EFDD RDALDAI ALD 
Sbjct: 1   MTRVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRPPGYAFLEFDDERDALDAISALDR 60

Query: 126 KNGWRVELSHNSKGGGGGGGGRCGRGGGGGGGGDDLKCYECGEPGHFARECRSRGGSRGI 185
           KNGWRVELSH  KGG GGGGGR        GG +D KCYECGE GHFARECR     RG 
Sbjct: 61  KNGWRVELSHKDKGGRGGGGGR-------RGGIEDSKCYECGELGHFARECR-----RGR 120

Query: 186 GGGLRRSPSPRRRRSPSYERYGRRSNSPRGKRS-PRRRSITPPKRGRSYSRSPPLRHAR- 245
           G   RRSPSPRRRRSP Y      S SPRG+RS PRRRS+TPP+RGRSYSRSPP R +R 
Sbjct: 121 GSVRRRSPSPRRRRSPDY-----GSISPRGRRSPPRRRSVTPPRRGRSYSRSPPYRGSRR 180

Query: 246 -----------HASPYANG 252
                        SPYANG
Sbjct: 181 DSPRRRDSPYGRRSPYANG 182

[Close]
BLAST of CmoCh18G008110 vs. TAIR 10
Match: AT2G24590.1 (RNA recognition motif and CCHC-type zinc finger domains containing protein )

HSP 1 Score: 226.5 bits (576), Expect = 2.4e-59
Identity = 130/192 (67.71%), Postives = 146/192 (76.04%), Query Frame = 0 

Query: 66  MTRVYIGNLDPRVSERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDG 125
           M+RVY+GNLDPRV+ER+LEDEFR FGV+RSVWVARRPPGYAF++F+D RDA DAI+ +DG
Sbjct: 1   MSRVYVGNLDPRVTERELEDEFRSFGVIRSVWVARRPPGYAFLDFEDSRDARDAIREVDG 60

Query: 126 KNGWRVELSHNSKGGGGGGGGRCGRGGGGGGGGDDLKCYECGEPGHFARECRSRGGSRGI 185
           KNGWRVE SHN  GGGG GGGR G  GG G GG DLKCYECGE GHFARECRSRGGS   
Sbjct: 61  KNGWRVEQSHNRGGGGGRGGGRGGGDGGRGRGGSDLKCYECGESGHFARECRSRGGS--- 120

Query: 186 GGGLRRSPS-----PRRRRSPSYERYGRRSNSPRGKRSPRRRSITPPKRGRSYSRSPPLR 245
            GG RRS S     PR R+SP+Y   GRRS SPR +  P  R  +P  RGR+YSRSPP  
Sbjct: 121 -GGRRRSRSRSRSPPRYRKSPTYG--GRRSYSPRARSPPPPRRRSPSPRGRNYSRSPPPY 180

Query: 246 HARHASPYANGD 253
            AR   PYANG+
Sbjct: 181 RARDEVPYANGN 186

[Close]
BLAST of CmoCh18G008110 vs. TAIR 10
Match: AT4G31580.1 (serine/arginine-rich 22 )

HSP 1 Score: 224.9 bits (572), Expect = 7.0e-59
Identity = 137/198 (69.19%), Postives = 152/198 (76.77%), Query Frame = 0 

Query: 66  MTRVYIGNLDPRVSERDLEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDG 125
           M+RVY+GNLDPRV+ER+LEDEFR FGV+RSVWVARRPPGYAF++F+D RDA DAI+ALDG
Sbjct: 1   MSRVYVGNLDPRVTERELEDEFRAFGVVRSVWVARRPPGYAFLDFEDPRDARDAIRALDG 60

Query: 126 KNGWRVELSHN--SKGGGGGGGGRCGRGGG-GGGGGDDLKCYECGEPGHFARECRSRGGS 185
           KNGWRVE SHN   +GGGG GG R G GGG GG GG DLKCYECGE GHFARECR+RGG+
Sbjct: 61  KNGWRVEQSHNRGERGGGGRGGDRGGGGGGRGGRGGSDLKCYECGETGHFARECRNRGGT 120

Query: 186 RGIGGGLRRSPS-----PRRRRSPSYERYGRRSNSPRGKR--SPRRRSIT-PPKRGRSYS 245
                G RRS S     PR RRSPS   YGRRS SPR +    PRRRS + PP RGRSYS
Sbjct: 121 -----GRRRSKSRSRTPPRYRRSPS---YGRRSYSPRARSPPPPRRRSPSPPPARGRSYS 180

Query: 246 RSPPLRHARHASPYANGD 253
           RSPP   AR   PYANG+
Sbjct: 181 RSPPPYRAREEVPYANGN 190

The following BLAST results are available for this feature:
BLAST of CmoCh18G008110 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
O811273.0e-6269.85Serine/arginine-rich splicing factor RSZ21 OS=Arabidopsis thaliana OX=3702 GN=RS... [more]
Q9SJA63.4e-5867.71Serine/arginine-rich splicing factor RSZ22A OS=Arabidopsis thaliana OX=3702 GN=R... [more]
O811269.9e-5869.19Serine/arginine-rich splicing factor RSZ22 OS=Arabidopsis thaliana OX=3702 GN=RS... [more]
Q69KL99.6e-5364.74Serine/arginine-rich splicing factor RSZ21A OS=Oryza sativa subsp. japonica OX=3... [more]
Q6K4N03.6e-5263.49Serine/arginine-rich splicing factor RSZ21 OS=Oryza sativa subsp. japonica OX=39... [more]
BLAST of CmoCh18G008110 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1G1N93.5e-98100.00serine/arginine-rich splicing factor RSZ21-like isoform X1 OS=Cucurbita moschata... [more]
A0A1S3BEJ41.9e-9195.19serine/arginine-rich splicing factor RSZ21 OS=Cucumis melo OX=3656 GN=LOC1034890... [more]
A0A5D3CUM79.2e-9195.16Serine/arginine-rich splicing factor RSZ21 isoform X1 OS=Cucumis melo var. makuw... [more]
A0A6J1G1L43.5e-90100.00serine/arginine-rich splicing factor RSZ21-like isoform X2 OS=Cucurbita moschata... [more]
A0A6J1KZV21.3e-8994.68serine/arginine-rich splicing factor RSZ21-like OS=Cucurbita maxima OX=3661 GN=L... [more]
BLAST of CmoCh18G008110 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G23860.12.1e-6369.85RS-containing zinc finger protein 21 [more]
AT1G23860.22.1e-6369.85RS-containing zinc finger protein 21 [more]
AT1G23860.42.6e-6168.34RS-containing zinc finger protein 21 [more]
AT2G24590.12.4e-5967.71RNA recognition motif and CCHC-type zinc finger domains containing protein [more]
AT4G31580.17.0e-5969.19serine/arginine-rich 22 [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001878Zinc finger, CCHC-typeSMARTSM00343c2hcfinal6coord: 162..178
e-value: 1.9E-5
score: 34.1
IPR001878Zinc finger, CCHC-typePFAMPF00098zf-CCHCcoord: 162..177
e-value: 1.2E-7
score: 31.5
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 162..178
score: 11.037273
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 68..134
e-value: 2.9E-17
score: 73.3
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 69..126
e-value: 1.5E-15
score: 56.8
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 67..138
score: 16.005526
NoneNo IPR availableGENE3D4.10.60.10coord: 162..205
e-value: 1.5E-7
score: 32.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 197..211
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 175..252
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 212..238
NoneNo IPR availablePANTHERPTHR23147:SF164SERINE/ARGININE-RICH SPLICING FACTOR RSZ21A-LIKE ISOFORM X1coord: 57..250
NoneNo IPR availablePANTHERPTHR23147SERINE/ARGININE RICH SPLICING FACTORcoord: 57..250
NoneNo IPR availableCDDcd12373RRM_SRSF3_likecoord: 68..136
e-value: 1.93699E-35
score: 119.262
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 64..161
e-value: 1.3E-21
score: 79.1
IPR036875Zinc finger, CCHC-type superfamilySUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 153..179
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 65..157

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh18G008110.1CmoCh18G008110.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003723 RNA binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0003676 nucleic acid binding