CmoCh18G001200 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh18G001200
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	RING-H2 finger protein ATL48-like
Location	Cmo_Chr18: 840999 .. 842941 (+)
RNA-Seq Expression	CmoCh18G001200
Synteny	CmoCh18G001200

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAGGATGTTTGGCCACGTCACCTTCCTCCGAGATGCATGCTATAATTTCTATCAATTCACAAGGTTAGGTTCTAATTAATTCATCGAAGGATTGTTTAAAGAAGGTTAATAATATTAGACTCTAATTAAAATAAAATAAAATAGTAAAAACTTAACCTATTTTATTTAAAAATAATAATAATTCAAAAATTATTTTTTTGCACAATAAATGTGGTTTTTTAATATATTTATATCCATTTTTATTCTAAACTTTTTGTTTTTTATTTGATTATGTTGAATCCTATAAGTTTTAATTCGTATGTCATAAAATATTAGCATAAAAATATATATATATATATATATATATTATGCATAGTATAAAATTAATAAGATTTTAAAGAAAAATAATACAAGCTAATATTTTATTGGTTTTTTTTTTCTTTTTTTACTTTTTGACAAATTTATTCAACAATTAAATTGGGTTTAGAAGTTACTTTTATTGAAATGAGTAGTTTTTTAAAAGATTTTTACATTTTGTTTATTTATTTATTTATTATCTATTTTTTTTTTTTGTGGTAAAAAATAATGTTGAAAATTGAATAGTCAAAACTACAAGAAGTTTGACTCATGAGGGGTAAAAATTTGATTTTTTCTATATCTAAATTTTTTAATGATAAAAAATAAATAGTTGAATGGGCCCCCGACCCGCTAATTCGTGCCCCATTTACATCCACACCCGGTCGAACTTGTACGAGAGGAGGAAGACAAAGGCCACGGCGTCTACCTCTTTCTTTCCAAACCAATTCTTCCTGAGTCGGTGGCTTTTAATCCTCTGCGTTTATTGTTCTTGATTCAGATTCTCCTCCCTTCCCGCGTCGTTCTGTTAGAAACGGCATCGCGATTCACAGGTATGAGCTCAGGCGAACCCAATTTGGACGAATTCTTCGTAGAGAAGAAGCGCGCCAGGAACCCTTTGGTCCCCGTCGGTAATTTCCCCAATTTCTTCCTCCTTGGTATTGTTACTTCTTCAATTTCTTAGGATACTCTTTTCCGCCGGTGGATTATGTCATAGGGTTGTATGGGACGTGCTGAATTCTGGGTATTTCTGAATTTTCGAAATTGTTGCCCAGCATGTTCTTTGAAATGGGGGACTATAAGTACAGATACTCTGTGAATATCTATTGGTTACTGTTGTACTCACAGGCCTTCATGTTATTGAAGAATCAAGCCTTTTTTCCCCCAATTATGGATCCACAAGCATGGAGATTTTAAGCAGATTTTAGGAAGGGGGAGATTTTCCTAGCTCCAAAGAGTTTCATTCCGTGCTTTCACATGATTGAAACTGCTTATGAGAGTCAATGGTTGTTAATTCTAGGCTATAGAGCTATATATTTTCTTTTTCTGGTTGGCAATGGTGCTGCCGTGCCATGTGTTTCCCTCTTTTGGTTTATGTTTGATAGAATTTAATATCAGGTGCATTTGTAACTGCTGGAGTTCTCACTGCTGGATTAATCAGCTTTAGACAAGGAAACTCTCAATTGGGGCAGATGCTAATGAGAGCTCGTGTGGTTGTCCAAGGCGCTACAGTAGCACTGATGGTTGGCACCGCTTTCTACTATGGCGAGAATCCCTGGCGGCCGAGTTAATATGTCAATGTTCTTTTTATGATTTGCTTTTCAGGATCTTGTTTTACGTCGAGAGATTTCGGTAACATTGAAAGATTGTTGTCTTTCAATCTTTCTTCAAATATAACAACAGGTCATTCGGTGATTTGATGACAATATTTATGTTATGTATTCATTCCTAGGGCATAGATGAGTTGCCTTCAAAGATATAAATCTTGGTGTTATGTTGGAATATTGAAATTATAAGAGAAAATCATTGGGTATATTCTCAATATCTTCATCTTATTTTGATGAGCGTCCATATATTATATATATGCTTCTGTTGTCTACACGAG

mRNA sequence

ATGAGAGGATGTTTGGCCACGTCACCTTCCTCCGAGATGCATGCTATAATTTCTATCAATTCACAAGAGGAGGAAGACAAAGGCCACGGCGTCTACCTCTTTCTTTCCAAACCAATTCTTCCTGAGTCGGTGGCTTTTAATCCTCTGCGTTTATTGTTCTTGATTCAGATTCTCCTCCCTTCCCGCGTCGTTCTGTTAGAAACGGCATCGCGATTCACAGGTATGAGCTCAGGCGAACCCAATTTGGACGAATTCTTCGTAGAGAAGAAGCGCGCCAGGAACCCTTTGGTCCCCGTCGGTGCATTTGTAACTGCTGGAGTTCTCACTGCTGGATTAATCAGCTTTAGACAAGGAAACTCTCAATTGGGGCAGATGCTAATGAGAGCTCGTGTGGTTGTCCAAGGCGCTACAGTAGCACTGATGGTTGGCACCGCTTTCTACTATGGCGAGAATCCCTGGCGGCCGAGTTAATATGTCAATGTTCTTTTTATGATTTGCTTTTCAGGATCTTGTTTTACGTCGAGAGATTTCGGTAACATTGAAAGATTGTTGTCTTTCAATCTTTCTTCAAATATAACAACAGGTCATTCGGTGATTTGATGACAATATTTATGTTATGTATTCATTCCTAGGGCATAGATGAGTTGCCTTCAAAGATATAAATCTTGGTGTTATGTTGGAATATTGAAATTATAAGAGAAAATCATTGGGTATATTCTCAATATCTTCATCTTATTTTGATGAGCGTCCATATATTATATATATGCTTCTGTTGTCTACACGAG

Coding sequence (CDS)

ATGAGAGGATGTTTGGCCACGTCACCTTCCTCCGAGATGCATGCTATAATTTCTATCAATTCACAAGAGGAGGAAGACAAAGGCCACGGCGTCTACCTCTTTCTTTCCAAACCAATTCTTCCTGAGTCGGTGGCTTTTAATCCTCTGCGTTTATTGTTCTTGATTCAGATTCTCCTCCCTTCCCGCGTCGTTCTGTTAGAAACGGCATCGCGATTCACAGGTATGAGCTCAGGCGAACCCAATTTGGACGAATTCTTCGTAGAGAAGAAGCGCGCCAGGAACCCTTTGGTCCCCGTCGGTGCATTTGTAACTGCTGGAGTTCTCACTGCTGGATTAATCAGCTTTAGACAAGGAAACTCTCAATTGGGGCAGATGCTAATGAGAGCTCGTGTGGTTGTCCAAGGCGCTACAGTAGCACTGATGGTTGGCACCGCTTTCTACTATGGCGAGAATCCCTGGCGGCCGAGTTAA

Protein sequence

MRGCLATSPSSEMHAIISINSQEEEDKGHGVYLFLSKPILPESVAFNPLRLLFLIQILLPSRVVLLETASRFTGMSSGEPNLDEFFVEKKRARNPLVPVGAFVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQGATVALMVGTAFYYGENPWRPS

Homology

[Close]

BLAST of CmoCh18G001200 vs. ExPASy Swiss-Prot
Match: Q7X843 (RING-H2 finger protein ATL48 OS=Arabidopsis thaliana OX=3702 GN=ATL48 PE=1 SV=2)

HSP 1 Score: 134.0 bits (336), Expect = 1.4e-30
Identity = 63/80 (78.75%), Postives = 74/80 (92.50%), Query Frame = 0


Query: 75  MSSGEPNLDEFFVEKKRARNPLVPVGAFVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQ 134
           MSS EP++++ F EKKR RNPLVP+GA +TAGVLTAGLISFR+GNSQLGQ+LMRARVVVQ
Sbjct: 1   MSSVEPDMEDLFQEKKRVRNPLVPLGALMTAGVLTAGLISFRRGNSQLGQVLMRARVVVQ 60

Query: 135 GATVALMVGTAFYYGENPWR 155
           GATVALMVGT +YYG+NPW+
Sbjct: 61  GATVALMVGTGYYYGDNPWK 80

[Close]

BLAST of CmoCh18G001200 vs. ExPASy Swiss-Prot
Match: Q9BW72 (HIG1 domain family member 2A, mitochondrial OS=Homo sapiens OX=9606 GN=HIGD2A PE=1 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 9.0e-09
Identity = 33/63 (52.38%), Postives = 42/63 (66.67%), Query Frame = 0


Query: 84  EFFVEKKRARNPLVPVGAFVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQGATV-ALMV 143
           E FV K R  NP+VP+G   TA  LT GL SF +GNSQ  Q++MR R+  QG TV A+++
Sbjct: 37  EKFVRKTR-ENPVVPIGCLATAAALTYGLYSFHRGNSQRSQLMMRTRIAAQGFTVAAILL 96

Query: 144 GTA 146
           G A
Sbjct: 97  GLA 98

[Close]

BLAST of CmoCh18G001200 vs. ExPASy Swiss-Prot
Match: Q4VC39 (Putative HIG1 domain family member 2B OS=Homo sapiens OX=9606 GN=HIGD2B PE=5 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.3e-07
Identity = 33/78 (42.31%), Postives = 46/78 (58.97%), Query Frame = 0


Query: 72  FTGMSSGEPNLDEFFVEK---KRARNPLVPVGAFVTAGVLTAGLISFRQGNSQLGQMLMR 131
           F G+S    +  E F EK   K   NP+VP+G   TA VLT GL  F QGNSQ  +++M 
Sbjct: 21  FEGLSPTVYSNPEGFKEKFLRKTRENPVVPIGFLCTAAVLTNGLYCFHQGNSQCSRLMMH 80

Query: 132 ARVVVQGATV-ALMVGTA 146
            ++  QG T+ A+++G A
Sbjct: 81  TQIAAQGFTIAAILLGLA 98

[Close]

BLAST of CmoCh18G001200 vs. ExPASy Swiss-Prot
Match: Q9CQJ1 (HIG1 domain family member 2A OS=Mus musculus OX=10090 GN=Higd2a PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 8.4e-07
Identity = 30/70 (42.86%), Postives = 40/70 (57.14%), Query Frame = 0


Query: 77  SGEPNLDEFFVEKKRARNPLVPVGAFVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQGA 136
           S      E F+ K R  NP+VP+G   TA  LT GL  F +G S   Q++MR R+  QG 
Sbjct: 30  SNPEGFKEKFIRKTR-ENPMVPIGCLGTAAALTYGLYCFHRGQSHRSQLMMRTRIAAQGF 89

Query: 137 T-VALMVGTA 146
           T VA+++G A
Sbjct: 90  TVVAILLGLA 98

[Close]

BLAST of CmoCh18G001200 vs. ExPASy Swiss-Prot
Match: Q6CBQ8 (Respiratory supercomplex factor 1, mitochondrial OS=Yarrowia lipolytica (strain CLIB 122 / E 150) OX=284591 GN=RCF1 PE=3 SV=2)

HSP 1 Score: 53.1 bits (126), Expect = 3.2e-06
Identity = 25/58 (43.10%), Postives = 33/58 (56.90%), Query Frame = 0


Query: 95  PLVPVGAFVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQGATVALMVGTAFYYGENP 153
           PLVP+G   T G L     + R GN +    +  ARV  QG TVA ++G A YYG++P
Sbjct: 34  PLVPLGCLATCGALILSARALRVGNKRQANRMFFARVAFQGLTVAALIGGAMYYGQDP 91

[Close]

BLAST of CmoCh18G001200 vs. ExPASy TrEMBL
Match: A0A6J1GSJ9 (RING-H2 finger protein ATL48-like OS=Cucurbita moschata OX=3662 GN=LOC111457053 PE=4 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 1.7e-66
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0


Query: 24  EEDKGHGVYLFLSKPILPESVAFNPLRLLFLIQILLPSRVVLLETASRFTGMSSGEPNLD 83
           EEDKGHGVYLFLSKPILPESVAFNPLRLLFLIQILLPSRVVLLETASRFTGMSSGEPNLD
Sbjct: 3   EEDKGHGVYLFLSKPILPESVAFNPLRLLFLIQILLPSRVVLLETASRFTGMSSGEPNLD 62

Query: 84  EFFVEKKRARNPLVPVGAFVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQGATVALMVG 143
           EFFVEKKRARNPLVPVGAFVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQGATVALMVG
Sbjct: 63  EFFVEKKRARNPLVPVGAFVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQGATVALMVG 122

Query: 144 TAFYYGENPWRPS 157
           TAFYYGENPWRPS
Sbjct: 123 TAFYYGENPWRPS 135

[Close]

BLAST of CmoCh18G001200 vs. ExPASy TrEMBL
Match: A0A6J1K3J5 (RING-H2 finger protein ATL48-like OS=Cucurbita maxima OX=3661 GN=LOC111490327 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 5.2e-36
Identity = 80/82 (97.56%), Postives = 80/82 (97.56%), Query Frame = 0


Query: 75  MSSGEPNLDEFFVEKKRARNPLVPVGAFVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQ 134
           MSSGE NLDEFFVEKKRARNPLVPVGA VTAGVLTAGLISFRQGNSQLGQMLMRARVVVQ
Sbjct: 1   MSSGESNLDEFFVEKKRARNPLVPVGALVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQ 60

Query: 135 GATVALMVGTAFYYGENPWRPS 157
           GATVALMVGTAFYYGENPWRPS
Sbjct: 61  GATVALMVGTAFYYGENPWRPS 82

[Close]

BLAST of CmoCh18G001200 vs. ExPASy TrEMBL
Match: A0A0A0LTF8 (HIG1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G045920 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 8.4e-34
Identity = 75/82 (91.46%), Postives = 78/82 (95.12%), Query Frame = 0


Query: 75  MSSGEPNLDEFFVEKKRARNPLVPVGAFVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQ 134
           MSS EPNLDEFFVEKKRARNPLVP+GA  TAGVLTAGLISFR+GNSQLGQMLMRARVVVQ
Sbjct: 1   MSSDEPNLDEFFVEKKRARNPLVPIGALATAGVLTAGLISFRRGNSQLGQMLMRARVVVQ 60

Query: 135 GATVALMVGTAFYYGENPWRPS 157
           GATVALMVGTA+YYGENPWR S
Sbjct: 61  GATVALMVGTAYYYGENPWRSS 82

[Close]

BLAST of CmoCh18G001200 vs. ExPASy TrEMBL
Match: A0A5A7UHA1 (RING-H2 finger protein ATL48 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G003480 PE=4 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 1.1e-33
Identity = 75/82 (91.46%), Postives = 78/82 (95.12%), Query Frame = 0


Query: 75  MSSGEPNLDEFFVEKKRARNPLVPVGAFVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQ 134
           MSS EPNLDEFFVEKKRARNPLVP+GA  TAGVLTAGLISFR+GNSQLGQ+LMRARVVVQ
Sbjct: 1   MSSDEPNLDEFFVEKKRARNPLVPIGALATAGVLTAGLISFRRGNSQLGQILMRARVVVQ 60

Query: 135 GATVALMVGTAFYYGENPWRPS 157
           GATVALMVGTAFYYGENPWR S
Sbjct: 61  GATVALMVGTAFYYGENPWRSS 82

[Close]

BLAST of CmoCh18G001200 vs. ExPASy TrEMBL
Match: A0A1S3AVM7 (RING-H2 finger protein ATL48 OS=Cucumis melo OX=3656 GN=LOC103483333 PE=4 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 1.1e-33
Identity = 75/82 (91.46%), Postives = 78/82 (95.12%), Query Frame = 0


Query: 75  MSSGEPNLDEFFVEKKRARNPLVPVGAFVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQ 134
           MSS EPNLDEFFVEKKRARNPLVP+GA  TAGVLTAGLISFR+GNSQLGQ+LMRARVVVQ
Sbjct: 1   MSSDEPNLDEFFVEKKRARNPLVPIGALATAGVLTAGLISFRRGNSQLGQILMRARVVVQ 60

Query: 135 GATVALMVGTAFYYGENPWRPS 157
           GATVALMVGTAFYYGENPWR S
Sbjct: 61  GATVALMVGTAFYYGENPWRSS 82

[Close]

BLAST of CmoCh18G001200 vs. NCBI nr
Match: XP_022954948.1 (RING-H2 finger protein ATL48-like [Cucurbita moschata])

HSP 1 Score: 261.9 bits (668), Expect = 3.5e-66
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0


Query: 24  EEDKGHGVYLFLSKPILPESVAFNPLRLLFLIQILLPSRVVLLETASRFTGMSSGEPNLD 83
           EEDKGHGVYLFLSKPILPESVAFNPLRLLFLIQILLPSRVVLLETASRFTGMSSGEPNLD
Sbjct: 3   EEDKGHGVYLFLSKPILPESVAFNPLRLLFLIQILLPSRVVLLETASRFTGMSSGEPNLD 62

Query: 84  EFFVEKKRARNPLVPVGAFVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQGATVALMVG 143
           EFFVEKKRARNPLVPVGAFVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQGATVALMVG
Sbjct: 63  EFFVEKKRARNPLVPVGAFVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQGATVALMVG 122

Query: 144 TAFYYGENPWRPS 157
           TAFYYGENPWRPS
Sbjct: 123 TAFYYGENPWRPS 135

[Close]

BLAST of CmoCh18G001200 vs. NCBI nr
Match: KAG6573043.1 (RING-H2 finger protein ATL48, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 166.0 bits (419), Expect = 2.6e-37
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0


Query: 75  MSSGEPNLDEFFVEKKRARNPLVPVGAFVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQ 134
           MSSGEPNLDEFFVEKKRARNPLVPVGAFVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQ
Sbjct: 1   MSSGEPNLDEFFVEKKRARNPLVPVGAFVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQ 60

Query: 135 GATVALMVGTAFYYGENPWRPS 157
           GATVALMVGTAFYYGENPWRPS
Sbjct: 61  GATVALMVGTAFYYGENPWRPS 82

[Close]

BLAST of CmoCh18G001200 vs. NCBI nr
Match: KAG7012232.1 (RING-H2 finger protein ATL48 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 164.5 bits (415), Expect = 7.5e-37
Identity = 81/82 (98.78%), Postives = 81/82 (98.78%), Query Frame = 0


Query: 75  MSSGEPNLDEFFVEKKRARNPLVPVGAFVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQ 134
           MSSGEPNLDEFFVEKKRARNPLVPVGAFVTAGVLTAGLISFRQGNSQLGQMLMRARVV Q
Sbjct: 1   MSSGEPNLDEFFVEKKRARNPLVPVGAFVTAGVLTAGLISFRQGNSQLGQMLMRARVVAQ 60

Query: 135 GATVALMVGTAFYYGENPWRPS 157
           GATVALMVGTAFYYGENPWRPS
Sbjct: 61  GATVALMVGTAFYYGENPWRPS 82

[Close]

BLAST of CmoCh18G001200 vs. NCBI nr
Match: XP_023541211.1 (RING-H2 finger protein ATL48-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 161.4 bits (407), Expect = 6.4e-36
Identity = 79/82 (96.34%), Postives = 81/82 (98.78%), Query Frame = 0


Query: 75  MSSGEPNLDEFFVEKKRARNPLVPVGAFVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQ 134
           MSSGEPNLDEFFVEKKRARNPLVP+GA VTAGVLTAGLISFRQGNSQLGQMLMRARVVVQ
Sbjct: 1   MSSGEPNLDEFFVEKKRARNPLVPLGALVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQ 60

Query: 135 GATVALMVGTAFYYGENPWRPS 157
           GATVALMVGTAFYYG+NPWRPS
Sbjct: 61  GATVALMVGTAFYYGDNPWRPS 82

[Close]

BLAST of CmoCh18G001200 vs. NCBI nr
Match: XP_022994684.1 (RING-H2 finger protein ATL48-like [Cucurbita maxima])

HSP 1 Score: 160.6 bits (405), Expect = 1.1e-35
Identity = 80/82 (97.56%), Postives = 80/82 (97.56%), Query Frame = 0


Query: 75  MSSGEPNLDEFFVEKKRARNPLVPVGAFVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQ 134
           MSSGE NLDEFFVEKKRARNPLVPVGA VTAGVLTAGLISFRQGNSQLGQMLMRARVVVQ
Sbjct: 1   MSSGESNLDEFFVEKKRARNPLVPVGALVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQ 60

Query: 135 GATVALMVGTAFYYGENPWRPS 157
           GATVALMVGTAFYYGENPWRPS
Sbjct: 61  GATVALMVGTAFYYGENPWRPS 82

[Close]

BLAST of CmoCh18G001200 vs. TAIR 10
Match: AT3G48030.1 (hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family protein )

HSP 1 Score: 134.0 bits (336), Expect = 1.0e-31
Identity = 63/80 (78.75%), Postives = 74/80 (92.50%), Query Frame = 0


Query: 75  MSSGEPNLDEFFVEKKRARNPLVPVGAFVTAGVLTAGLISFRQGNSQLGQMLMRARVVVQ 134
           MSS EP++++ F EKKR RNPLVP+GA +TAGVLTAGLISFR+GNSQLGQ+LMRARVVVQ
Sbjct: 1   MSSVEPDMEDLFQEKKRVRNPLVPLGALMTAGVLTAGLISFRRGNSQLGQVLMRARVVVQ 60

Query: 135 GATVALMVGTAFYYGENPWR 155
           GATVALMVGT +YYG+NPW+
Sbjct: 61  GATVALMVGTGYYYGDNPWK 80

The following BLAST results are available for this feature:

BLAST of CmoCh18G001200 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q7X843	1.4e-30	78.75	RING-H2 finger protein ATL48 OS=Arabidopsis thaliana OX=3702 GN=ATL48 PE=1 SV=2	[more]
Q9BW72	9.0e-09	52.38	HIG1 domain family member 2A, mitochondrial OS=Homo sapiens OX=9606 GN=HIGD2A PE...	[more]
Q4VC39	1.3e-07	42.31	Putative HIG1 domain family member 2B OS=Homo sapiens OX=9606 GN=HIGD2B PE=5 SV=...	[more]
Q9CQJ1	8.4e-07	42.86	HIG1 domain family member 2A OS=Mus musculus OX=10090 GN=Higd2a PE=3 SV=1	[more]
Q6CBQ8	3.2e-06	43.10	Respiratory supercomplex factor 1, mitochondrial OS=Yarrowia lipolytica (strain ...	[more]

BLAST of CmoCh18G001200 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GSJ9	1.7e-66	100.00	RING-H2 finger protein ATL48-like OS=Cucurbita moschata OX=3662 GN=LOC111457053 ...	[more]
A0A6J1K3J5	5.2e-36	97.56	RING-H2 finger protein ATL48-like OS=Cucurbita maxima OX=3661 GN=LOC111490327 PE...	[more]
A0A0A0LTF8	8.4e-34	91.46	HIG1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G045920 PE=4 S...	[more]
A0A5A7UHA1	1.1e-33	91.46	RING-H2 finger protein ATL48 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A1S3AVM7	1.1e-33	91.46	RING-H2 finger protein ATL48 OS=Cucumis melo OX=3656 GN=LOC103483333 PE=4 SV=1	[more]

BLAST of CmoCh18G001200 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022954948.1	3.5e-66	100.00	RING-H2 finger protein ATL48-like [Cucurbita moschata]	[more]
KAG6573043.1	2.6e-37	100.00	RING-H2 finger protein ATL48, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7012232.1	7.5e-37	98.78	RING-H2 finger protein ATL48 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_023541211.1	6.4e-36	96.34	RING-H2 finger protein ATL48-like [Cucurbita pepo subsp. pepo]	[more]
XP_022994684.1	1.1e-35	97.56	RING-H2 finger protein ATL48-like [Cucurbita maxima]	[more]

BLAST of CmoCh18G001200 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G48030.1	1.0e-31	78.75	hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family ...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007667	Hypoxia induced protein, domain	PFAM	PF04588	HIG_1_N	coord: 94..143 e-value: 5.2E-16 score: 58.6
IPR007667	Hypoxia induced protein, domain	PROSITE	PS51503	HIG1	coord: 66..156 score: 18.890326
None	No IPR available	GENE3D	6.10.140.1320		coord: 94..151 e-value: 4.7E-15 score: 57.1
None	No IPR available	PANTHER	PTHR12297	HYPOXIA-INDUCBILE GENE 1 HIG1 -RELATED	coord: 76..151
None	No IPR available	PANTHER	PTHR12297:SF3	HIG1 DOMAIN FAMILY MEMBER 2A	coord: 76..151

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh18G001200.1	CmoCh18G001200.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane