CmoCh17G013500 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh17G013500
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
Descriptionprotein MEI2-like 4
LocationCmo_Chr17: 10520709 .. 10521410 (-)
RNA-Seq ExpressionCmoCh17G013500
SyntenyCmoCh17G013500
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCGTCTGAAGTATTGGACCTTAAGGGTTTGTCTTCATCTTCCTTCTTCTCCGACGATTTACATCATTCAGATGAGGTATGGTCAGACCCTTGGCTTTCATGAGCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTCTCTCTTTTCTAGCACGAGAGATTGATTGTTCCTGCAGTTCATAATACTGCATTTTTGAGGATCTGGAACTTCAGTCTAACCCACCATTTCTGTTTCCTTCCAATTTCTCTTTTTTTTTTTTTGTTTCCTTGCGTTCCAGGGGCAGGTTGGAGTTTGGACGTCGGCTGGTGTGCCAAATCACCGTGGTCAGTGCAAATGACCCACGAACCACTTTTATATTTTCTTTCTTTTTGGTTACTTTTAGTTTCTTGTGTTATTATCTTTTGAATACTTGAACTTTCAAGTAGAGAATATAATTGTCCTTAATTGA

mRNA sequence

ATGCCGTCTGAAGTATTGGACCTTAAGGGTTTGTCTTCATCTTCCTTCTTCTCCGACGATTTACATCATTCAGATGAGCACGAGAGATTGATTGTTCCTGCAGTTCATAATACTGCATTTTTGAGGATCTGGAACTTCAGTCTAACCCACCATTTCTGTTTCCTTCCAATTTCTCTTTTTTTTTTTTTGGGCAGGTTGGAGTTTGGACGTCGGCTGGTGTGCCAAATCACCGTGGTCAGTGCAAATGACCCACGAACCACTTTTATATTTTCTTTCTTTTTGTTTCTTGTGTTATTATCTTTTGAATACTTGAACTTTCAAGTAGAGAATATAATTGTCCTTAATTGA

Coding sequence (CDS)

ATGCCGTCTGAAGTATTGGACCTTAAGGGTTTGTCTTCATCTTCCTTCTTCTCCGACGATTTACATCATTCAGATGAGCACGAGAGATTGATTGTTCCTGCAGTTCATAATACTGCATTTTTGAGGATCTGGAACTTCAGTCTAACCCACCATTTCTGTTTCCTTCCAATTTCTCTTTTTTTTTTTTTGGGCAGGTTGGAGTTTGGACGTCGGCTGGTGTGCCAAATCACCGTGGTCAGTGCAAATGACCCACGAACCACTTTTATATTTTCTTTCTTTTTGTTTCTTGTGTTATTATCTTTTGAATACTTGAACTTTCAAGTAGAGAATATAATTGTCCTTAATTGA

Protein sequence

MPSEVLDLKGLSSSSFFSDDLHHSDEHERLIVPAVHNTAFLRIWNFSLTHHFCFLPISLFFFLGRLEFGRRLVCQITVVSANDPRTTFIFSFFLFLVLLSFEYLNFQVENIIVLN
Homology
[Close]
BLAST of CmoCh17G013500 vs. ExPASy TrEMBL
Match: A0A6J1JLF9 (protein MEI2-like 4 OS=Cucurbita maxima OX=3661 GN=LOC111487995 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.3e-04
Identity = 26/26 (100.00%), Postives = 26/26 (100.00%), Query Frame = 0 

Query: 1  MPSEVLDLKGLSSSSFFSDDLHHSDE 27
          MPSEVLDLKGLSSSSFFSDDLHHSDE
Sbjct: 1  MPSEVLDLKGLSSSSFFSDDLHHSDE 26

[Close]
BLAST of CmoCh17G013500 vs. ExPASy TrEMBL
Match: A0A6J1GPS0 (protein MEI2-like 4 OS=Cucurbita moschata OX=3662 GN=LOC111456003 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.3e-04
Identity = 26/26 (100.00%), Postives = 26/26 (100.00%), Query Frame = 0 

Query: 1  MPSEVLDLKGLSSSSFFSDDLHHSDE 27
          MPSEVLDLKGLSSSSFFSDDLHHSDE
Sbjct: 1  MPSEVLDLKGLSSSSFFSDDLHHSDE 26

[Close]
BLAST of CmoCh17G013500 vs. NCBI nr
Match: XP_022991304.1 (protein MEI2-like 4 [Cucurbita maxima] >XP_022991305.1 protein MEI2-like 4 [Cucurbita maxima] >XP_022991306.1 protein MEI2-like 4 [Cucurbita maxima] >XP_022991307.1 protein MEI2-like 4 [Cucurbita maxima] >XP_022991308.1 protein MEI2-like 4 [Cucurbita maxima] >XP_022991309.1 protein MEI2-like 4 [Cucurbita maxima] >XP_022991310.1 protein MEI2-like 4 [Cucurbita maxima] >XP_022991311.1 protein MEI2-like 4 [Cucurbita maxima] >XP_022991312.1 protein MEI2-like 4 [Cucurbita maxima])

HSP 1 Score: 55.8 bits (133), Expect = 2.8e-04
Identity = 26/26 (100.00%), Postives = 26/26 (100.00%), Query Frame = 0 

Query: 1  MPSEVLDLKGLSSSSFFSDDLHHSDE 27
          MPSEVLDLKGLSSSSFFSDDLHHSDE
Sbjct: 1  MPSEVLDLKGLSSSSFFSDDLHHSDE 26

[Close]
BLAST of CmoCh17G013500 vs. NCBI nr
Match: XP_022953453.1 (protein MEI2-like 4 [Cucurbita moschata] >XP_022953454.1 protein MEI2-like 4 [Cucurbita moschata] >XP_022953455.1 protein MEI2-like 4 [Cucurbita moschata] >XP_022953457.1 protein MEI2-like 4 [Cucurbita moschata] >XP_022953458.1 protein MEI2-like 4 [Cucurbita moschata] >XP_022953459.1 protein MEI2-like 4 [Cucurbita moschata] >XP_022953460.1 protein MEI2-like 4 [Cucurbita moschata])

HSP 1 Score: 55.8 bits (133), Expect = 2.8e-04
Identity = 26/26 (100.00%), Postives = 26/26 (100.00%), Query Frame = 0 

Query: 1  MPSEVLDLKGLSSSSFFSDDLHHSDE 27
          MPSEVLDLKGLSSSSFFSDDLHHSDE
Sbjct: 1  MPSEVLDLKGLSSSSFFSDDLHHSDE 26

[Close]
BLAST of CmoCh17G013500 vs. NCBI nr
Match: KAG7014617.1 (Protein MEI2-like 4 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 55.8 bits (133), Expect = 2.8e-04
Identity = 26/26 (100.00%), Postives = 26/26 (100.00%), Query Frame = 0 

Query: 1  MPSEVLDLKGLSSSSFFSDDLHHSDE 27
          MPSEVLDLKGLSSSSFFSDDLHHSDE
Sbjct: 1  MPSEVLDLKGLSSSSFFSDDLHHSDE 26

[Close]
BLAST of CmoCh17G013500 vs. NCBI nr
Match: XP_038876285.1 (protein MEI2-like 4 isoform X1 [Benincasa hispida] >XP_038876286.1 protein MEI2-like 4 isoform X1 [Benincasa hispida])

HSP 1 Score: 55.8 bits (133), Expect = 2.8e-04
Identity = 26/26 (100.00%), Postives = 26/26 (100.00%), Query Frame = 0 

Query: 1  MPSEVLDLKGLSSSSFFSDDLHHSDE 27
          MPSEVLDLKGLSSSSFFSDDLHHSDE
Sbjct: 1  MPSEVLDLKGLSSSSFFSDDLHHSDE 26

[Close]
BLAST of CmoCh17G013500 vs. NCBI nr
Match: XP_038876287.1 (protein MEI2-like 4 isoform X2 [Benincasa hispida])

HSP 1 Score: 55.8 bits (133), Expect = 2.8e-04
Identity = 26/26 (100.00%), Postives = 26/26 (100.00%), Query Frame = 0 

Query: 1  MPSEVLDLKGLSSSSFFSDDLHHSDE 27
          MPSEVLDLKGLSSSSFFSDDLHHSDE
Sbjct: 1  MPSEVLDLKGLSSSSFFSDDLHHSDE 26

The following BLAST results are available for this feature:
BLAST of CmoCh17G013500 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh17G013500 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1JLF91.3e-04100.00protein MEI2-like 4 OS=Cucurbita maxima OX=3661 GN=LOC111487995 PE=4 SV=1[more]
A0A6J1GPS01.3e-04100.00protein MEI2-like 4 OS=Cucurbita moschata OX=3662 GN=LOC111456003 PE=4 SV=1[more]
BLAST of CmoCh17G013500 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022991304.12.8e-04100.00protein MEI2-like 4 [Cucurbita maxima] >XP_022991305.1 protein MEI2-like 4 [Cucu... [more]
XP_022953453.12.8e-04100.00protein MEI2-like 4 [Cucurbita moschata] >XP_022953454.1 protein MEI2-like 4 [Cu... [more]
KAG7014617.12.8e-04100.00Protein MEI2-like 4 [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_038876285.12.8e-04100.00protein MEI2-like 4 isoform X1 [Benincasa hispida] >XP_038876286.1 protein MEI2-... [more]
XP_038876287.12.8e-04100.00protein MEI2-like 4 isoform X2 [Benincasa hispida][more]
BLAST of CmoCh17G013500 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh17G013500.1CmoCh17G013500.1mRNA