Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCCAATTGCTTATGGCTTTGTTTCTGGCTCTTATGGCCACTCACGCCCTGGCTAGACCTACGCCACCCGACGCCACCTTCAATGACCAAAAGAACTTCCTTACCTACGGTGGCATTGGTAGCTACTCTGGCATTGGCAGCAACGGCCTCCCCTTCGGTGGCATTGGCGGTGCAGTCGGATCAGGCGGCGATCTCGGTGGTGGACTAGGCGGCCCTGCTGGAGGAATTGGTGGACTAGGTGGGTTGGGAGGAACCGGCGGTGGCATTGGAGGCGGAGCTGGCAGTGGTCTCGGTGGTGGCTCTGGTCTTACCAATCCCTGA
mRNA sequence
ATGGCCCAATTGCTTATGGCTTTGTTTCTGGCTCTTATGGCCACTCACGCCCTGGCTAGACCTACGCCACCCGACGCCACCTTCAATGACCAAAAGAACTTCCTTACCTACGGTGGCATTGGTAGCTACTCTGGCATTGGCAGCAACGGCCTCCCCTTCGGTGGCATTGGCGGTGCAGTCGGATCAGGCGGCGATCTCGGTGGTGGACTAGGCGGCCCTGCTGGAGGAATTGGTGGACTAGGTGGGTTGGGAGGAACCGGCGGTGGCATTGGAGGCGGAGCTGGCAGTGGTCTCGGTGGTGGCTCTGGTCTTACCAATCCCTGA
Coding sequence (CDS)
ATGGCCCAATTGCTTATGGCTTTGTTTCTGGCTCTTATGGCCACTCACGCCCTGGCTAGACCTACGCCACCCGACGCCACCTTCAATGACCAAAAGAACTTCCTTACCTACGGTGGCATTGGTAGCTACTCTGGCATTGGCAGCAACGGCCTCCCCTTCGGTGGCATTGGCGGTGCAGTCGGATCAGGCGGCGATCTCGGTGGTGGACTAGGCGGCCCTGCTGGAGGAATTGGTGGACTAGGTGGGTTGGGAGGAACCGGCGGTGGCATTGGAGGCGGAGCTGGCAGTGGTCTCGGTGGTGGCTCTGGTCTTACCAATCCCTGA
Protein sequence
MAQLLMALFLALMATHALARPTPPDATFNDQKNFLTYGGIGSYSGIGSNGLPFGGIGGAVGSGGDLGGGLGGPAGGIGGLGGLGGTGGGIGGGAGSGLGGGSGLTNP
Homology
BLAST of CmoCh17G012140 vs. ExPASy TrEMBL
Match:
A0A6J1GPC7 (glycine-rich protein 5-like OS=Cucurbita moschata OX=3662 GN=LOC111456299 PE=4 SV=1)
HSP 1 Score: 168.7 bits (426), Expect = 1.3e-38
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0
Query: 6 MALFLALMATHALARPTPPDATFNDQKNFLTYGGIGSYSGIGSNGLPFGGIGGAVGSGGD 65
MALFLALMATHALARPTPPDATFNDQKNFLTYGGIGSYSGIGSNGLPFGGIGGAVGSGGD
Sbjct: 1 MALFLALMATHALARPTPPDATFNDQKNFLTYGGIGSYSGIGSNGLPFGGIGGAVGSGGD 60
Query: 66 LGGGLGGPAGGIGGLGGLGGTGGGIGGGAGSGLGGGSGLTNP 108
LGGGLGGPAGGIGGLGGLGGTGGGIGGGAGSGLGGGSGLTNP
Sbjct: 61 LGGGLGGPAGGIGGLGGLGGTGGGIGGGAGSGLGGGSGLTNP 102
BLAST of CmoCh17G012140 vs. ExPASy TrEMBL
Match:
A0A5A7U5T7 (Acanthoscurrin-1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold945G00150 PE=4 SV=1)
HSP 1 Score: 115.2 bits (287), Expect = 1.7e-22
Identity = 82/112 (73.21%), Postives = 89/112 (79.46%), Query Frame = 0
Query: 1 MAQLLMALFLALMATHALARPTPPDATFNDQKNFLTYGGIGSYSGIGSNGLPFGGIGGAV 60
MA+L MAL LAL+ATHALARPTP D TF+DQKNFLTYGG+G YSGIGSNGLPFGG+GGA+
Sbjct: 1 MAKLFMALLLALVATHALARPTPKDDTFSDQKNFLTYGGVGGYSGIGSNGLPFGGVGGAI 60
Query: 61 GS---GGDLGGGLGGPAGGIGGLGGLGGTGGGIG------GGAGSGLGGGSG 104
G GG LGGGLGG G GGLGGLGGTGGG+G GG G GLGGG G
Sbjct: 61 GGGGLGGGLGGGLGGATGIGGGLGGLGGTGGGLGGIGGTTGGLGGGLGGGLG 112
BLAST of CmoCh17G012140 vs. ExPASy TrEMBL
Match:
A0A6J1KVV3 (acanthoscurrin-1-like OS=Cucurbita maxima OX=3661 GN=LOC111498068 PE=4 SV=1)
HSP 1 Score: 112.1 bits (279), Expect = 1.5e-21
Identity = 77/103 (74.76%), Postives = 83/103 (80.58%), Query Frame = 0
Query: 1 MAQLLMALFLALMATHALARPTPPDATFNDQKNFLTYGGIGSYSGIGSNGLPFGGIGGAV 60
MA+L MA+ LAL+ATHALARPTP DATF DQKNFLTYGG+G YSGIGSNGLPFGG+GGAV
Sbjct: 1 MAKLFMAMLLALLATHALARPTPKDATFTDQKNFLTYGGLGGYSGIGSNGLPFGGLGGAV 60
Query: 61 GSGGDLGGGLGGPAGGIGGLGGLGGTGGGIGGGAGSGLGGGSG 104
G G G GG GGIGGLGG GG G G+GGG G GLGGG G
Sbjct: 61 G-----GTGPGGIGGGIGGLGGFGGGGAGLGGGLGGGLGGGLG 98
BLAST of CmoCh17G012140 vs. ExPASy TrEMBL
Match:
A0A1S3CFV5 (glycine-rich cell wall structural protein 1-like OS=Cucumis melo OX=3656 GN=LOC103500476 PE=4 SV=1)
HSP 1 Score: 111.3 bits (277), Expect = 2.5e-21
Identity = 84/116 (72.41%), Postives = 91/116 (78.45%), Query Frame = 0
Query: 1 MAQLLMALFLALMATHALARPTPPDATFNDQKNFLTYGGIGSYSGIGSNGLPFGGIGGAV 60
MA+L MAL LAL+ATHALARP P TF+DQKNFLTYGG+G YSGIGSNGLPFGG+GG V
Sbjct: 1 MAKLFMALLLALIATHALARPITPGTTFDDQKNFLTYGGLGGYSGIGSNGLPFGGVGGVV 60
Query: 61 G--SGGDLGGGLGGPAGGIGGLGGL-----GGTGGGIGGGAGS--GLGGGSGLTNP 108
G G LGGGLGG A GIGGLGGL GG G G+GGGAG G+GGGSGLTNP
Sbjct: 61 GGTGPGGLGGGLGG-ATGIGGLGGLGGGAAGGLGSGVGGGAGGGVGVGGGSGLTNP 115
BLAST of CmoCh17G012140 vs. ExPASy TrEMBL
Match:
A0A1S3CGR1 (acanthoscurrin-1-like OS=Cucumis melo OX=3656 GN=LOC103500553 PE=4 SV=1)
HSP 1 Score: 110.9 bits (276), Expect = 3.3e-21
Identity = 79/107 (73.83%), Postives = 85/107 (79.44%), Query Frame = 0
Query: 6 MALFLALMATHALARPTPPDATFNDQKNFLTYGGIGSYSGIGSNGLPFGGIGGAVGS--- 65
MAL LAL+ATHALARPTP D TF+DQKNFLTYGG+G YSGIGSNGLPFGG+GGA+G
Sbjct: 1 MALLLALVATHALARPTPKDDTFSDQKNFLTYGGVGGYSGIGSNGLPFGGVGGAIGGGGL 60
Query: 66 GGDLGGGLGGPAGGIGGLGGLGGTGGGIG------GGAGSGLGGGSG 104
GG LGGGLGG G GGLGGLGGTGGG+G GG G GLGGG G
Sbjct: 61 GGGLGGGLGGATGIGGGLGGLGGTGGGLGGIGGTTGGLGGGLGGGLG 107
BLAST of CmoCh17G012140 vs. NCBI nr
Match:
KAG6575963.1 (hypothetical protein SDJN03_26602, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 172.6 bits (436), Expect = 1.9e-39
Identity = 105/107 (98.13%), Postives = 106/107 (99.07%), Query Frame = 0
Query: 1 MAQLLMALFLALMATHALARPTPPDATFNDQKNFLTYGGIGSYSGIGSNGLPFGGIGGAV 60
MA+LLMALFLALM THALARPTPPDATFNDQKNFLTYGGIGSYSGIGSNGLPFGGIGGAV
Sbjct: 1 MAKLLMALFLALMVTHALARPTPPDATFNDQKNFLTYGGIGSYSGIGSNGLPFGGIGGAV 60
Query: 61 GSGGDLGGGLGGPAGGIGGLGGLGGTGGGIGGGAGSGLGGGSGLTNP 108
GSGGDLGGGLGGPAGGIGGLGGLGGTGGGIGGGAGSGLGGGSGLTNP
Sbjct: 61 GSGGDLGGGLGGPAGGIGGLGGLGGTGGGIGGGAGSGLGGGSGLTNP 107
BLAST of CmoCh17G012140 vs. NCBI nr
Match:
XP_023549421.1 (glycine-rich protein 5-like [Cucurbita pepo subsp. pepo])
HSP 1 Score: 170.2 bits (430), Expect = 9.4e-39
Identity = 104/107 (97.20%), Postives = 105/107 (98.13%), Query Frame = 0
Query: 1 MAQLLMALFLALMATHALARPTPPDATFNDQKNFLTYGGIGSYSGIGSNGLPFGGIGGAV 60
MA+LLMALFLALMATHALARPTPPDATFNDQKNFLTYGGIGSYSGIGSNGLPFGGIGGAV
Sbjct: 1 MAKLLMALFLALMATHALARPTPPDATFNDQKNFLTYGGIGSYSGIGSNGLPFGGIGGAV 60
Query: 61 GSGGDLGGGLGGPAGGIGGLGGLGGTGGGIGGGAGSGLGGGSGLTNP 108
GSGGDLGGGLGGPAGGIGGLGGLGGTGGGIGGG G GLGGGSGLTNP
Sbjct: 61 GSGGDLGGGLGGPAGGIGGLGGLGGTGGGIGGGDGGGLGGGSGLTNP 107
BLAST of CmoCh17G012140 vs. NCBI nr
Match:
XP_022953896.1 (glycine-rich protein 5-like [Cucurbita moschata])
HSP 1 Score: 168.7 bits (426), Expect = 2.7e-38
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0
Query: 6 MALFLALMATHALARPTPPDATFNDQKNFLTYGGIGSYSGIGSNGLPFGGIGGAVGSGGD 65
MALFLALMATHALARPTPPDATFNDQKNFLTYGGIGSYSGIGSNGLPFGGIGGAVGSGGD
Sbjct: 1 MALFLALMATHALARPTPPDATFNDQKNFLTYGGIGSYSGIGSNGLPFGGIGGAVGSGGD 60
Query: 66 LGGGLGGPAGGIGGLGGLGGTGGGIGGGAGSGLGGGSGLTNP 108
LGGGLGGPAGGIGGLGGLGGTGGGIGGGAGSGLGGGSGLTNP
Sbjct: 61 LGGGLGGPAGGIGGLGGLGGTGGGIGGGAGSGLGGGSGLTNP 102
BLAST of CmoCh17G012140 vs. NCBI nr
Match:
KAG7014487.1 (hypothetical protein SDJN02_24665, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 162.5 bits (410), Expect = 2.0e-36
Identity = 100/102 (98.04%), Postives = 101/102 (99.02%), Query Frame = 0
Query: 1 MAQLLMALFLALMATHALARPTPPDATFNDQKNFLTYGGIGSYSGIGSNGLPFGGIGGAV 60
MA+LLMALFLALM THALARPTPPDATFNDQKNFLTYGGIGSYSGIGSNGLPFGGIGGAV
Sbjct: 1 MAKLLMALFLALMVTHALARPTPPDATFNDQKNFLTYGGIGSYSGIGSNGLPFGGIGGAV 60
Query: 61 GSGGDLGGGLGGPAGGIGGLGGLGGTGGGIGGGAGSGLGGGS 103
GSGGDLGGGLGGPAGGIGGLGGLGGTGGGIGGGAGSGLGGGS
Sbjct: 61 GSGGDLGGGLGGPAGGIGGLGGLGGTGGGIGGGAGSGLGGGS 102
BLAST of CmoCh17G012140 vs. NCBI nr
Match:
XP_038899239.1 (glycine-rich protein 5-like [Benincasa hispida])
HSP 1 Score: 117.1 bits (292), Expect = 9.4e-23
Identity = 85/117 (72.65%), Postives = 93/117 (79.49%), Query Frame = 0
Query: 1 MAQLLMALFLALMATHALARPTPPDATFNDQKNFLTYGGIGSYSGIGSNGLPFGGIGGAV 60
MA+L MAL LAL+ATHALARPT PD TFNDQKNFLTYGG+G+YSGIGSNGLPFGG+GGA+
Sbjct: 1 MAKLFMALLLALVATHALARPT-PDTTFNDQKNFLTYGGLGAYSGIGSNGLPFGGVGGAM 60
Query: 61 GSGGDLGGGLGGPAGGIGGLGGLGGTGGGI----------GGGAGSGLGGGSGLTNP 108
G G LGGGLGG GG GLGGLGG+GGG G GAG G+GGGSGLTNP
Sbjct: 61 GGTG-LGGGLGGGLGGATGLGGLGGSGGGAAGGLGGGAGGGAGAGVGVGGGSGLTNP 115
BLAST of CmoCh17G012140 vs. TAIR 10
Match:
AT4G29030.1 (Putative membrane lipoprotein )
HSP 1 Score: 55.8 bits (133), Expect = 2.4e-08
Identity = 58/109 (53.21%), Postives = 67/109 (61.47%), Query Frame = 0
Query: 1 MAQLLMALFLALMATHAL---ARPTPPDATFNDQKNFLTYGGIGSYSGIGSNGLPFGGIG 60
MA+ +FL AL AR P +DQKN+L YG G YSG+G NGLPFGG+G
Sbjct: 1 MAKWFFTIFLVFALASALACGARNVP--VGLSDQKNYLGYG--GGYSGVGDNGLPFGGVG 60
Query: 61 GAV-GSGGDLG-GGLGGPAGGIGGLGGLGGTGGGIGGGAGSGLGGGSGL 105
G V G GG+LG GG GG GG+G GG GGG G G G GLGGGSG+
Sbjct: 61 GGVSGPGGNLGYGGFGGAGGGLG-----GGLGGGAGSGLGGGLGGGSGI 100
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1GPC7 | 1.3e-38 | 100.00 | glycine-rich protein 5-like OS=Cucurbita moschata OX=3662 GN=LOC111456299 PE=4 S... | [more] |
A0A5A7U5T7 | 1.7e-22 | 73.21 | Acanthoscurrin-1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94... | [more] |
A0A6J1KVV3 | 1.5e-21 | 74.76 | acanthoscurrin-1-like OS=Cucurbita maxima OX=3661 GN=LOC111498068 PE=4 SV=1 | [more] |
A0A1S3CFV5 | 2.5e-21 | 72.41 | glycine-rich cell wall structural protein 1-like OS=Cucumis melo OX=3656 GN=LOC1... | [more] |
A0A1S3CGR1 | 3.3e-21 | 73.83 | acanthoscurrin-1-like OS=Cucumis melo OX=3656 GN=LOC103500553 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |
KAG6575963.1 | 1.9e-39 | 98.13 | hypothetical protein SDJN03_26602, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
XP_023549421.1 | 9.4e-39 | 97.20 | glycine-rich protein 5-like [Cucurbita pepo subsp. pepo] | [more] |
XP_022953896.1 | 2.7e-38 | 100.00 | glycine-rich protein 5-like [Cucurbita moschata] | [more] |
KAG7014487.1 | 2.0e-36 | 98.04 | hypothetical protein SDJN02_24665, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
XP_038899239.1 | 9.4e-23 | 72.65 | glycine-rich protein 5-like [Benincasa hispida] | [more] |
Match Name | E-value | Identity | Description | |
AT4G29030.1 | 2.4e-08 | 53.21 | Putative membrane lipoprotein | [more] |