CmoCh17G012140 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh17G012140
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
Descriptionglycine-rich protein 5-like
LocationCmo_Chr17: 9702797 .. 9703120 (-)
RNA-Seq ExpressionCmoCh17G012140
SyntenyCmoCh17G012140
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCCAATTGCTTATGGCTTTGTTTCTGGCTCTTATGGCCACTCACGCCCTGGCTAGACCTACGCCACCCGACGCCACCTTCAATGACCAAAAGAACTTCCTTACCTACGGTGGCATTGGTAGCTACTCTGGCATTGGCAGCAACGGCCTCCCCTTCGGTGGCATTGGCGGTGCAGTCGGATCAGGCGGCGATCTCGGTGGTGGACTAGGCGGCCCTGCTGGAGGAATTGGTGGACTAGGTGGGTTGGGAGGAACCGGCGGTGGCATTGGAGGCGGAGCTGGCAGTGGTCTCGGTGGTGGCTCTGGTCTTACCAATCCCTGA

mRNA sequence

ATGGCCCAATTGCTTATGGCTTTGTTTCTGGCTCTTATGGCCACTCACGCCCTGGCTAGACCTACGCCACCCGACGCCACCTTCAATGACCAAAAGAACTTCCTTACCTACGGTGGCATTGGTAGCTACTCTGGCATTGGCAGCAACGGCCTCCCCTTCGGTGGCATTGGCGGTGCAGTCGGATCAGGCGGCGATCTCGGTGGTGGACTAGGCGGCCCTGCTGGAGGAATTGGTGGACTAGGTGGGTTGGGAGGAACCGGCGGTGGCATTGGAGGCGGAGCTGGCAGTGGTCTCGGTGGTGGCTCTGGTCTTACCAATCCCTGA

Coding sequence (CDS)

ATGGCCCAATTGCTTATGGCTTTGTTTCTGGCTCTTATGGCCACTCACGCCCTGGCTAGACCTACGCCACCCGACGCCACCTTCAATGACCAAAAGAACTTCCTTACCTACGGTGGCATTGGTAGCTACTCTGGCATTGGCAGCAACGGCCTCCCCTTCGGTGGCATTGGCGGTGCAGTCGGATCAGGCGGCGATCTCGGTGGTGGACTAGGCGGCCCTGCTGGAGGAATTGGTGGACTAGGTGGGTTGGGAGGAACCGGCGGTGGCATTGGAGGCGGAGCTGGCAGTGGTCTCGGTGGTGGCTCTGGTCTTACCAATCCCTGA

Protein sequence

MAQLLMALFLALMATHALARPTPPDATFNDQKNFLTYGGIGSYSGIGSNGLPFGGIGGAVGSGGDLGGGLGGPAGGIGGLGGLGGTGGGIGGGAGSGLGGGSGLTNP
Homology
BLAST of CmoCh17G012140 vs. ExPASy TrEMBL
Match: A0A6J1GPC7 (glycine-rich protein 5-like OS=Cucurbita moschata OX=3662 GN=LOC111456299 PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 1.3e-38
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0

Query: 6   MALFLALMATHALARPTPPDATFNDQKNFLTYGGIGSYSGIGSNGLPFGGIGGAVGSGGD 65
           MALFLALMATHALARPTPPDATFNDQKNFLTYGGIGSYSGIGSNGLPFGGIGGAVGSGGD
Sbjct: 1   MALFLALMATHALARPTPPDATFNDQKNFLTYGGIGSYSGIGSNGLPFGGIGGAVGSGGD 60

Query: 66  LGGGLGGPAGGIGGLGGLGGTGGGIGGGAGSGLGGGSGLTNP 108
           LGGGLGGPAGGIGGLGGLGGTGGGIGGGAGSGLGGGSGLTNP
Sbjct: 61  LGGGLGGPAGGIGGLGGLGGTGGGIGGGAGSGLGGGSGLTNP 102

BLAST of CmoCh17G012140 vs. ExPASy TrEMBL
Match: A0A5A7U5T7 (Acanthoscurrin-1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold945G00150 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 1.7e-22
Identity = 82/112 (73.21%), Postives = 89/112 (79.46%), Query Frame = 0

Query: 1   MAQLLMALFLALMATHALARPTPPDATFNDQKNFLTYGGIGSYSGIGSNGLPFGGIGGAV 60
           MA+L MAL LAL+ATHALARPTP D TF+DQKNFLTYGG+G YSGIGSNGLPFGG+GGA+
Sbjct: 1   MAKLFMALLLALVATHALARPTPKDDTFSDQKNFLTYGGVGGYSGIGSNGLPFGGVGGAI 60

Query: 61  GS---GGDLGGGLGGPAGGIGGLGGLGGTGGGIG------GGAGSGLGGGSG 104
           G    GG LGGGLGG  G  GGLGGLGGTGGG+G      GG G GLGGG G
Sbjct: 61  GGGGLGGGLGGGLGGATGIGGGLGGLGGTGGGLGGIGGTTGGLGGGLGGGLG 112

BLAST of CmoCh17G012140 vs. ExPASy TrEMBL
Match: A0A6J1KVV3 (acanthoscurrin-1-like OS=Cucurbita maxima OX=3661 GN=LOC111498068 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 1.5e-21
Identity = 77/103 (74.76%), Postives = 83/103 (80.58%), Query Frame = 0

Query: 1   MAQLLMALFLALMATHALARPTPPDATFNDQKNFLTYGGIGSYSGIGSNGLPFGGIGGAV 60
           MA+L MA+ LAL+ATHALARPTP DATF DQKNFLTYGG+G YSGIGSNGLPFGG+GGAV
Sbjct: 1   MAKLFMAMLLALLATHALARPTPKDATFTDQKNFLTYGGLGGYSGIGSNGLPFGGLGGAV 60

Query: 61  GSGGDLGGGLGGPAGGIGGLGGLGGTGGGIGGGAGSGLGGGSG 104
           G     G G GG  GGIGGLGG GG G G+GGG G GLGGG G
Sbjct: 61  G-----GTGPGGIGGGIGGLGGFGGGGAGLGGGLGGGLGGGLG 98

BLAST of CmoCh17G012140 vs. ExPASy TrEMBL
Match: A0A1S3CFV5 (glycine-rich cell wall structural protein 1-like OS=Cucumis melo OX=3656 GN=LOC103500476 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 2.5e-21
Identity = 84/116 (72.41%), Postives = 91/116 (78.45%), Query Frame = 0

Query: 1   MAQLLMALFLALMATHALARPTPPDATFNDQKNFLTYGGIGSYSGIGSNGLPFGGIGGAV 60
           MA+L MAL LAL+ATHALARP  P  TF+DQKNFLTYGG+G YSGIGSNGLPFGG+GG V
Sbjct: 1   MAKLFMALLLALIATHALARPITPGTTFDDQKNFLTYGGLGGYSGIGSNGLPFGGVGGVV 60

Query: 61  G--SGGDLGGGLGGPAGGIGGLGGL-----GGTGGGIGGGAGS--GLGGGSGLTNP 108
           G    G LGGGLGG A GIGGLGGL     GG G G+GGGAG   G+GGGSGLTNP
Sbjct: 61  GGTGPGGLGGGLGG-ATGIGGLGGLGGGAAGGLGSGVGGGAGGGVGVGGGSGLTNP 115

BLAST of CmoCh17G012140 vs. ExPASy TrEMBL
Match: A0A1S3CGR1 (acanthoscurrin-1-like OS=Cucumis melo OX=3656 GN=LOC103500553 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 3.3e-21
Identity = 79/107 (73.83%), Postives = 85/107 (79.44%), Query Frame = 0

Query: 6   MALFLALMATHALARPTPPDATFNDQKNFLTYGGIGSYSGIGSNGLPFGGIGGAVGS--- 65
           MAL LAL+ATHALARPTP D TF+DQKNFLTYGG+G YSGIGSNGLPFGG+GGA+G    
Sbjct: 1   MALLLALVATHALARPTPKDDTFSDQKNFLTYGGVGGYSGIGSNGLPFGGVGGAIGGGGL 60

Query: 66  GGDLGGGLGGPAGGIGGLGGLGGTGGGIG------GGAGSGLGGGSG 104
           GG LGGGLGG  G  GGLGGLGGTGGG+G      GG G GLGGG G
Sbjct: 61  GGGLGGGLGGATGIGGGLGGLGGTGGGLGGIGGTTGGLGGGLGGGLG 107

BLAST of CmoCh17G012140 vs. NCBI nr
Match: KAG6575963.1 (hypothetical protein SDJN03_26602, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 172.6 bits (436), Expect = 1.9e-39
Identity = 105/107 (98.13%), Postives = 106/107 (99.07%), Query Frame = 0

Query: 1   MAQLLMALFLALMATHALARPTPPDATFNDQKNFLTYGGIGSYSGIGSNGLPFGGIGGAV 60
           MA+LLMALFLALM THALARPTPPDATFNDQKNFLTYGGIGSYSGIGSNGLPFGGIGGAV
Sbjct: 1   MAKLLMALFLALMVTHALARPTPPDATFNDQKNFLTYGGIGSYSGIGSNGLPFGGIGGAV 60

Query: 61  GSGGDLGGGLGGPAGGIGGLGGLGGTGGGIGGGAGSGLGGGSGLTNP 108
           GSGGDLGGGLGGPAGGIGGLGGLGGTGGGIGGGAGSGLGGGSGLTNP
Sbjct: 61  GSGGDLGGGLGGPAGGIGGLGGLGGTGGGIGGGAGSGLGGGSGLTNP 107

BLAST of CmoCh17G012140 vs. NCBI nr
Match: XP_023549421.1 (glycine-rich protein 5-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 170.2 bits (430), Expect = 9.4e-39
Identity = 104/107 (97.20%), Postives = 105/107 (98.13%), Query Frame = 0

Query: 1   MAQLLMALFLALMATHALARPTPPDATFNDQKNFLTYGGIGSYSGIGSNGLPFGGIGGAV 60
           MA+LLMALFLALMATHALARPTPPDATFNDQKNFLTYGGIGSYSGIGSNGLPFGGIGGAV
Sbjct: 1   MAKLLMALFLALMATHALARPTPPDATFNDQKNFLTYGGIGSYSGIGSNGLPFGGIGGAV 60

Query: 61  GSGGDLGGGLGGPAGGIGGLGGLGGTGGGIGGGAGSGLGGGSGLTNP 108
           GSGGDLGGGLGGPAGGIGGLGGLGGTGGGIGGG G GLGGGSGLTNP
Sbjct: 61  GSGGDLGGGLGGPAGGIGGLGGLGGTGGGIGGGDGGGLGGGSGLTNP 107

BLAST of CmoCh17G012140 vs. NCBI nr
Match: XP_022953896.1 (glycine-rich protein 5-like [Cucurbita moschata])

HSP 1 Score: 168.7 bits (426), Expect = 2.7e-38
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0

Query: 6   MALFLALMATHALARPTPPDATFNDQKNFLTYGGIGSYSGIGSNGLPFGGIGGAVGSGGD 65
           MALFLALMATHALARPTPPDATFNDQKNFLTYGGIGSYSGIGSNGLPFGGIGGAVGSGGD
Sbjct: 1   MALFLALMATHALARPTPPDATFNDQKNFLTYGGIGSYSGIGSNGLPFGGIGGAVGSGGD 60

Query: 66  LGGGLGGPAGGIGGLGGLGGTGGGIGGGAGSGLGGGSGLTNP 108
           LGGGLGGPAGGIGGLGGLGGTGGGIGGGAGSGLGGGSGLTNP
Sbjct: 61  LGGGLGGPAGGIGGLGGLGGTGGGIGGGAGSGLGGGSGLTNP 102

BLAST of CmoCh17G012140 vs. NCBI nr
Match: KAG7014487.1 (hypothetical protein SDJN02_24665, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 162.5 bits (410), Expect = 2.0e-36
Identity = 100/102 (98.04%), Postives = 101/102 (99.02%), Query Frame = 0

Query: 1   MAQLLMALFLALMATHALARPTPPDATFNDQKNFLTYGGIGSYSGIGSNGLPFGGIGGAV 60
           MA+LLMALFLALM THALARPTPPDATFNDQKNFLTYGGIGSYSGIGSNGLPFGGIGGAV
Sbjct: 1   MAKLLMALFLALMVTHALARPTPPDATFNDQKNFLTYGGIGSYSGIGSNGLPFGGIGGAV 60

Query: 61  GSGGDLGGGLGGPAGGIGGLGGLGGTGGGIGGGAGSGLGGGS 103
           GSGGDLGGGLGGPAGGIGGLGGLGGTGGGIGGGAGSGLGGGS
Sbjct: 61  GSGGDLGGGLGGPAGGIGGLGGLGGTGGGIGGGAGSGLGGGS 102

BLAST of CmoCh17G012140 vs. NCBI nr
Match: XP_038899239.1 (glycine-rich protein 5-like [Benincasa hispida])

HSP 1 Score: 117.1 bits (292), Expect = 9.4e-23
Identity = 85/117 (72.65%), Postives = 93/117 (79.49%), Query Frame = 0

Query: 1   MAQLLMALFLALMATHALARPTPPDATFNDQKNFLTYGGIGSYSGIGSNGLPFGGIGGAV 60
           MA+L MAL LAL+ATHALARPT PD TFNDQKNFLTYGG+G+YSGIGSNGLPFGG+GGA+
Sbjct: 1   MAKLFMALLLALVATHALARPT-PDTTFNDQKNFLTYGGLGAYSGIGSNGLPFGGVGGAM 60

Query: 61  GSGGDLGGGLGGPAGGIGGLGGLGGTGGGI----------GGGAGSGLGGGSGLTNP 108
           G  G LGGGLGG  GG  GLGGLGG+GGG           G GAG G+GGGSGLTNP
Sbjct: 61  GGTG-LGGGLGGGLGGATGLGGLGGSGGGAAGGLGGGAGGGAGAGVGVGGGSGLTNP 115

BLAST of CmoCh17G012140 vs. TAIR 10
Match: AT4G29030.1 (Putative membrane lipoprotein )

HSP 1 Score: 55.8 bits (133), Expect = 2.4e-08
Identity = 58/109 (53.21%), Postives = 67/109 (61.47%), Query Frame = 0

Query: 1   MAQLLMALFLALMATHAL---ARPTPPDATFNDQKNFLTYGGIGSYSGIGSNGLPFGGIG 60
           MA+    +FL      AL   AR  P     +DQKN+L YG  G YSG+G NGLPFGG+G
Sbjct: 1   MAKWFFTIFLVFALASALACGARNVP--VGLSDQKNYLGYG--GGYSGVGDNGLPFGGVG 60

Query: 61  GAV-GSGGDLG-GGLGGPAGGIGGLGGLGGTGGGIGGGAGSGLGGGSGL 105
           G V G GG+LG GG GG  GG+G     GG GGG G G G GLGGGSG+
Sbjct: 61  GGVSGPGGNLGYGGFGGAGGGLG-----GGLGGGAGSGLGGGLGGGSGI 100

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1GPC71.3e-38100.00glycine-rich protein 5-like OS=Cucurbita moschata OX=3662 GN=LOC111456299 PE=4 S... [more]
A0A5A7U5T71.7e-2273.21Acanthoscurrin-1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94... [more]
A0A6J1KVV31.5e-2174.76acanthoscurrin-1-like OS=Cucurbita maxima OX=3661 GN=LOC111498068 PE=4 SV=1[more]
A0A1S3CFV52.5e-2172.41glycine-rich cell wall structural protein 1-like OS=Cucumis melo OX=3656 GN=LOC1... [more]
A0A1S3CGR13.3e-2173.83acanthoscurrin-1-like OS=Cucumis melo OX=3656 GN=LOC103500553 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KAG6575963.11.9e-3998.13hypothetical protein SDJN03_26602, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_023549421.19.4e-3997.20glycine-rich protein 5-like [Cucurbita pepo subsp. pepo][more]
XP_022953896.12.7e-38100.00glycine-rich protein 5-like [Cucurbita moschata][more]
KAG7014487.12.0e-3698.04hypothetical protein SDJN02_24665, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_038899239.19.4e-2372.65glycine-rich protein 5-like [Benincasa hispida][more]
Match NameE-valueIdentityDescription
AT4G29030.12.4e-0853.21Putative membrane lipoprotein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34463:SF11GLYCINE-RICH PROTEINcoord: 1..103
NoneNo IPR availablePANTHERPTHR34463GLYCINE-RICH PROTEINcoord: 1..103

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh17G012140.1CmoCh17G012140.1mRNA