Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTAGGAATGTGGCTGCATTGTTGCTCTTGACGGTTTGTTTGGTCGGGGCTCAGTCCGAGGTTGAGTCTGAGAAGACCACTATACAACTGCCAATTTCCAAGTATTACATTCATTTGATTAACGATCTAAGCATCCCTGATATGACGTTGCACTGCCAGTCGCGCGATGATGATTTAGGAATTCATCATTTACGGAAGGGAGAGGATTACCAATTTAACTTTAAAGTTAATATTTGGAAAACAACTCTTTTTTGGTGCAGAGTGGACAGGCCGAATGCATATATCTCTTTCGACTGCTTTTGGCCTGAGAAAAAGAGCTCATGGCTTCGTGATAGATGCAAAAATGGAGATATAGGAACTTGTATATGGAAGTTTAAAGATGATGGAATTTACTTGAGATTCAATGCAGCTAATACCGAAGAATTGGTTCATAAATGGATCATTACGAGATAAAGAACAGAACCTTTATTATTAATTCATATTGTTCTTGAGTTATCCATGAACATATGAAAAAGTACACTATCATTTGAAATGATAGTTTAATGAAGAAAATAAGTTGGGTGACCCTATTTGATTGTTTTTTTTTTTTATACAAATATATTTCATAACTAATTCTCGGGAATTTAAAATTAATAACAAAAATTGCCAAATTTTAATTCATTTGTTGAAAAATGATCAAATACCTTTATAGGTTGACTTTGACAATAAATTTTGTATTATACTAATTGATTGTCAGAAATATTGATGTTTTTGTTGCTAACTTAGAGGTAAGTTTTGAAAATTAATGAAATTTGTGGTTAACACGTCACTCCTTACAAGTTTGTACACATGCTTTTAGAGCTACTCGTTAGTTACGGAACCTGGTGCATTATTCCAAGAGTACTCTAAAGTTCTTTCGCCGAAGTATAGTTCAGAATCATCTCCAAATCTTAGTTAG
mRNA sequence
ATGATTAGGAATGTGGCTGCATTGTTGCTCTTGACGGTTTGTTTGGTCGGGGCTCAGTCCGAGGTTGAGTCTGAGAAGACCACTATACAACTGCCAATTTCCAAGTATTACATTCATTTGATTAACGATCTAAGCATCCCTGATATGACGTTGCACTGCCAGTCGCGCGATGATGATTTAGGAATTCATCATTTACGGAAGGGAGAGGATTACCAATTTAACTTTAAAAGCTACTCGTTAGTTACGGAACCTGGTGCATTATTCCAAGAGTACTCTAAAGTTCTTTCGCCGAAGTATAGTTCAGAATCATCTCCAAATCTTAGTTAG
Coding sequence (CDS)
ATGATTAGGAATGTGGCTGCATTGTTGCTCTTGACGGTTTGTTTGGTCGGGGCTCAGTCCGAGGTTGAGTCTGAGAAGACCACTATACAACTGCCAATTTCCAAGTATTACATTCATTTGATTAACGATCTAAGCATCCCTGATATGACGTTGCACTGCCAGTCGCGCGATGATGATTTAGGAATTCATCATTTACGGAAGGGAGAGGATTACCAATTTAACTTTAAAAGCTACTCGTTAGTTACGGAACCTGGTGCATTATTCCAAGAGTACTCTAAAGTTCTTTCGCCGAAGTATAGTTCAGAATCATCTCCAAATCTTAGTTAG
Protein sequence
MIRNVAALLLLTVCLVGAQSEVESEKTTIQLPISKYYIHLINDLSIPDMTLHCQSRDDDLGIHHLRKGEDYQFNFKSYSLVTEPGALFQEYSKVLSPKYSSESSPNLS
Homology
BLAST of CmoCh17G012080 vs. ExPASy TrEMBL
Match:
A0A6J1JX75 (S-protein homolog OS=Cucurbita maxima OX=3661 GN=LOC111488296 PE=3 SV=1)
HSP 1 Score: 127.5 bits (319), Expect = 3.4e-26
Identity = 64/76 (84.21%), Postives = 69/76 (90.79%), Query Frame = 0
Query: 1 MIRNVAALLLLTVCLVGAQSEVESEKTTIQLPISKYYIHLINDLSIPDMTLHCQSRDDDL 60
MIRNVAALLL+TV LVGAQ EVES+K IQ ISKYYIHLINDLSIPDMT+HC+S DDDL
Sbjct: 1 MIRNVAALLLVTVGLVGAQPEVESQKINIQPLISKYYIHLINDLSIPDMTVHCKSDDDDL 60
Query: 61 GIHHLRKGEDYQFNFK 77
GIHHL+KGEDYQFNFK
Sbjct: 61 GIHHLQKGEDYQFNFK 76
BLAST of CmoCh17G012080 vs. ExPASy TrEMBL
Match:
A0A6J1GPD2 (S-protein homolog OS=Cucurbita moschata OX=3662 GN=LOC111456304 PE=3 SV=1)
HSP 1 Score: 113.2 bits (282), Expect = 6.7e-22
Identity = 56/76 (73.68%), Postives = 65/76 (85.53%), Query Frame = 0
Query: 1 MIRNVAALLLLTVCLVGAQSEVESEKTTIQLPISKYYIHLINDLSIPDMTLHCQSRDDDL 60
MIR VAALLL+TV LVGAQ EV+S+K I+ ISKYY+HLINDLS PDMT+HC+S DDDL
Sbjct: 1 MIRYVAALLLVTVGLVGAQPEVQSKKINIRPLISKYYVHLINDLSSPDMTVHCKSGDDDL 60
Query: 61 GIHHLRKGEDYQFNFK 77
G HHL KGED+QF+FK
Sbjct: 61 GFHHLHKGEDFQFHFK 76
BLAST of CmoCh17G012080 vs. ExPASy TrEMBL
Match:
A0A6J1JVQ8 (S-protein homolog OS=Cucurbita maxima OX=3661 GN=LOC111488297 PE=3 SV=1)
HSP 1 Score: 105.1 bits (261), Expect = 1.8e-19
Identity = 57/78 (73.08%), Postives = 67/78 (85.90%), Query Frame = 0
Query: 1 MIRNVAALLLLTV--CLVGAQSEVESEKTTIQLPISKYYIHLINDLSIPDMTLHCQSRDD 60
MIRNVAALLL+TV LV AQ E ESEKT +Q PISKY+IHL+NDLSIPDMT+HC+S D+
Sbjct: 1 MIRNVAALLLVTVGLSLVEAQLEFESEKTNVQ-PISKYFIHLVNDLSIPDMTVHCKSVDN 60
Query: 61 DLGIHH-LRKGEDYQFNF 76
DLGI+H L+ G+DYQFNF
Sbjct: 61 DLGIYHSLKLGDDYQFNF 77
BLAST of CmoCh17G012080 vs. ExPASy TrEMBL
Match:
A0A6J1EYL3 (S-protein homolog OS=Cucurbita moschata OX=3662 GN=LOC111440344 PE=3 SV=1)
HSP 1 Score: 104.8 bits (260), Expect = 2.4e-19
Identity = 56/78 (71.79%), Postives = 67/78 (85.90%), Query Frame = 0
Query: 1 MIRNVAALLLLTV--CLVGAQSEVESEKTTIQLPISKYYIHLINDLSIPDMTLHCQSRDD 60
MIRNVAALLL+TV LVGAQ EVESEKT +Q PIS+Y+IH +NDLSIPDMT+HC++ D+
Sbjct: 1 MIRNVAALLLVTVGLGLVGAQLEVESEKTNVQ-PISRYFIHFVNDLSIPDMTVHCKTVDN 60
Query: 61 DLGIHH-LRKGEDYQFNF 76
DLGIH L+ G+DYQFNF
Sbjct: 61 DLGIHRSLKLGDDYQFNF 77
BLAST of CmoCh17G012080 vs. ExPASy TrEMBL
Match:
A0A6J1GPJ8 (S-protein homolog OS=Cucurbita moschata OX=3662 GN=LOC111456305 PE=3 SV=1)
HSP 1 Score: 103.2 bits (256), Expect = 6.9e-19
Identity = 51/77 (66.23%), Postives = 63/77 (81.82%), Query Frame = 0
Query: 1 MIRNVAALLLLTVCLVGAQSEVESEKTTIQLPISKYYIHLINDLSIPDMTLHCQSRDDDL 60
MIR VAALLL+TV LVGA EVE EK I+ P+S+YYIH +NDLSI M +HCQS+DDDL
Sbjct: 1 MIRIVAALLLVTVSLVGAHLEVEFEKINIKPPLSRYYIHFVNDLSILGMMVHCQSKDDDL 60
Query: 61 GIHH-LRKGEDYQFNFK 77
G+HH L +G++YQFNF+
Sbjct: 61 GVHHLLNRGDNYQFNFR 77
BLAST of CmoCh17G012080 vs. NCBI nr
Match:
XP_023549415.1 (S-protein homolog 1-like [Cucurbita pepo subsp. pepo])
HSP 1 Score: 131.0 bits (328), Expect = 6.4e-27
Identity = 64/76 (84.21%), Postives = 68/76 (89.47%), Query Frame = 0
Query: 1 MIRNVAALLLLTVCLVGAQSEVESEKTTIQLPISKYYIHLINDLSIPDMTLHCQSRDDDL 60
MIRNVAALLL+TVCLV AQ EVESEK +Q PISKYYIHLINDLSI DMT+HC+S DDDL
Sbjct: 1 MIRNVAALLLMTVCLVRAQPEVESEKINVQPPISKYYIHLINDLSISDMTVHCKSADDDL 60
Query: 61 GIHHLRKGEDYQFNFK 77
GIHHL KGEDYQFNFK
Sbjct: 61 GIHHLHKGEDYQFNFK 76
BLAST of CmoCh17G012080 vs. NCBI nr
Match:
XP_022991763.1 (S-protein homolog 5-like [Cucurbita maxima])
HSP 1 Score: 127.5 bits (319), Expect = 7.0e-26
Identity = 64/76 (84.21%), Postives = 69/76 (90.79%), Query Frame = 0
Query: 1 MIRNVAALLLLTVCLVGAQSEVESEKTTIQLPISKYYIHLINDLSIPDMTLHCQSRDDDL 60
MIRNVAALLL+TV LVGAQ EVES+K IQ ISKYYIHLINDLSIPDMT+HC+S DDDL
Sbjct: 1 MIRNVAALLLVTVGLVGAQPEVESQKINIQPLISKYYIHLINDLSIPDMTVHCKSDDDDL 60
Query: 61 GIHHLRKGEDYQFNFK 77
GIHHL+KGEDYQFNFK
Sbjct: 61 GIHHLQKGEDYQFNFK 76
BLAST of CmoCh17G012080 vs. NCBI nr
Match:
XP_023548645.1 (S-protein homolog 74-like [Cucurbita pepo subsp. pepo])
HSP 1 Score: 117.9 bits (294), Expect = 5.6e-23
Identity = 58/76 (76.32%), Postives = 66/76 (86.84%), Query Frame = 0
Query: 1 MIRNVAALLLLTVCLVGAQSEVESEKTTIQLPISKYYIHLINDLSIPDMTLHCQSRDDDL 60
MIRNVAALLL+TV LVGAQ EVES+K I+ ISKYY+HLINDLS PDMT+HC+S D+DL
Sbjct: 1 MIRNVAALLLVTVGLVGAQPEVESKKINIRPLISKYYVHLINDLSSPDMTVHCKSADNDL 60
Query: 61 GIHHLRKGEDYQFNFK 77
G HHL KGED+QFNFK
Sbjct: 61 GFHHLHKGEDFQFNFK 76
BLAST of CmoCh17G012080 vs. NCBI nr
Match:
XP_022953901.1 (S-protein homolog 5-like [Cucurbita moschata])
HSP 1 Score: 113.2 bits (282), Expect = 1.4e-21
Identity = 56/76 (73.68%), Postives = 65/76 (85.53%), Query Frame = 0
Query: 1 MIRNVAALLLLTVCLVGAQSEVESEKTTIQLPISKYYIHLINDLSIPDMTLHCQSRDDDL 60
MIR VAALLL+TV LVGAQ EV+S+K I+ ISKYY+HLINDLS PDMT+HC+S DDDL
Sbjct: 1 MIRYVAALLLVTVGLVGAQPEVQSKKINIRPLISKYYVHLINDLSSPDMTVHCKSGDDDL 60
Query: 61 GIHHLRKGEDYQFNFK 77
G HHL KGED+QF+FK
Sbjct: 61 GFHHLHKGEDFQFHFK 76
BLAST of CmoCh17G012080 vs. NCBI nr
Match:
XP_023539378.1 (S-protein homolog 1-like [Cucurbita pepo subsp. pepo])
HSP 1 Score: 110.9 bits (276), Expect = 6.8e-21
Identity = 52/62 (83.87%), Postives = 56/62 (90.32%), Query Frame = 0
Query: 15 LVGAQSEVESEKTTIQLPISKYYIHLINDLSIPDMTLHCQSRDDDLGIHHLRKGEDYQFN 74
LVGAQ +VESEK IQ ISKYYIHLINDLSIPDMT+HC+S DDDLGIHHL+KGEDYQFN
Sbjct: 3 LVGAQPKVESEKINIQPAISKYYIHLINDLSIPDMTVHCKSADDDLGIHHLQKGEDYQFN 62
Query: 75 FK 77
FK
Sbjct: 63 FK 64
BLAST of CmoCh17G012080 vs. TAIR 10
Match:
AT5G04350.1 (Plant self-incompatibility protein S1 family )
HSP 1 Score: 40.8 bits (94), Expect = 8.1e-04
Identity = 15/27 (55.56%), Postives = 22/27 (81.48%), Query Frame = 0
Query: 49 MTLHCQSRDDDLGIHHLRKGEDYQFNF 76
+ +HC+S+DDDLG H L+ G+DY+F F
Sbjct: 41 LKVHCRSKDDDLGEHILKIGQDYEFTF 67
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1JX75 | 3.4e-26 | 84.21 | S-protein homolog OS=Cucurbita maxima OX=3661 GN=LOC111488296 PE=3 SV=1 | [more] |
A0A6J1GPD2 | 6.7e-22 | 73.68 | S-protein homolog OS=Cucurbita moschata OX=3662 GN=LOC111456304 PE=3 SV=1 | [more] |
A0A6J1JVQ8 | 1.8e-19 | 73.08 | S-protein homolog OS=Cucurbita maxima OX=3661 GN=LOC111488297 PE=3 SV=1 | [more] |
A0A6J1EYL3 | 2.4e-19 | 71.79 | S-protein homolog OS=Cucurbita moschata OX=3662 GN=LOC111440344 PE=3 SV=1 | [more] |
A0A6J1GPJ8 | 6.9e-19 | 66.23 | S-protein homolog OS=Cucurbita moschata OX=3662 GN=LOC111456305 PE=3 SV=1 | [more] |
Match Name | E-value | Identity | Description | |
AT5G04350.1 | 8.1e-04 | 55.56 | Plant self-incompatibility protein S1 family | [more] |