CmoCh17G012080 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh17G012080
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionS-protein homolog
LocationCmo_Chr17: 9684046 .. 9684985 (-)
RNA-Seq ExpressionCmoCh17G012080
SyntenyCmoCh17G012080
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTAGGAATGTGGCTGCATTGTTGCTCTTGACGGTTTGTTTGGTCGGGGCTCAGTCCGAGGTTGAGTCTGAGAAGACCACTATACAACTGCCAATTTCCAAGTATTACATTCATTTGATTAACGATCTAAGCATCCCTGATATGACGTTGCACTGCCAGTCGCGCGATGATGATTTAGGAATTCATCATTTACGGAAGGGAGAGGATTACCAATTTAACTTTAAAGTTAATATTTGGAAAACAACTCTTTTTTGGTGCAGAGTGGACAGGCCGAATGCATATATCTCTTTCGACTGCTTTTGGCCTGAGAAAAAGAGCTCATGGCTTCGTGATAGATGCAAAAATGGAGATATAGGAACTTGTATATGGAAGTTTAAAGATGATGGAATTTACTTGAGATTCAATGCAGCTAATACCGAAGAATTGGTTCATAAATGGATCATTACGAGATAAAGAACAGAACCTTTATTATTAATTCATATTGTTCTTGAGTTATCCATGAACATATGAAAAAGTACACTATCATTTGAAATGATAGTTTAATGAAGAAAATAAGTTGGGTGACCCTATTTGATTGTTTTTTTTTTTTATACAAATATATTTCATAACTAATTCTCGGGAATTTAAAATTAATAACAAAAATTGCCAAATTTTAATTCATTTGTTGAAAAATGATCAAATACCTTTATAGGTTGACTTTGACAATAAATTTTGTATTATACTAATTGATTGTCAGAAATATTGATGTTTTTGTTGCTAACTTAGAGGTAAGTTTTGAAAATTAATGAAATTTGTGGTTAACACGTCACTCCTTACAAGTTTGTACACATGCTTTTAGAGCTACTCGTTAGTTACGGAACCTGGTGCATTATTCCAAGAGTACTCTAAAGTTCTTTCGCCGAAGTATAGTTCAGAATCATCTCCAAATCTTAGTTAG

mRNA sequence

ATGATTAGGAATGTGGCTGCATTGTTGCTCTTGACGGTTTGTTTGGTCGGGGCTCAGTCCGAGGTTGAGTCTGAGAAGACCACTATACAACTGCCAATTTCCAAGTATTACATTCATTTGATTAACGATCTAAGCATCCCTGATATGACGTTGCACTGCCAGTCGCGCGATGATGATTTAGGAATTCATCATTTACGGAAGGGAGAGGATTACCAATTTAACTTTAAAAGCTACTCGTTAGTTACGGAACCTGGTGCATTATTCCAAGAGTACTCTAAAGTTCTTTCGCCGAAGTATAGTTCAGAATCATCTCCAAATCTTAGTTAG

Coding sequence (CDS)

ATGATTAGGAATGTGGCTGCATTGTTGCTCTTGACGGTTTGTTTGGTCGGGGCTCAGTCCGAGGTTGAGTCTGAGAAGACCACTATACAACTGCCAATTTCCAAGTATTACATTCATTTGATTAACGATCTAAGCATCCCTGATATGACGTTGCACTGCCAGTCGCGCGATGATGATTTAGGAATTCATCATTTACGGAAGGGAGAGGATTACCAATTTAACTTTAAAAGCTACTCGTTAGTTACGGAACCTGGTGCATTATTCCAAGAGTACTCTAAAGTTCTTTCGCCGAAGTATAGTTCAGAATCATCTCCAAATCTTAGTTAG

Protein sequence

MIRNVAALLLLTVCLVGAQSEVESEKTTIQLPISKYYIHLINDLSIPDMTLHCQSRDDDLGIHHLRKGEDYQFNFKSYSLVTEPGALFQEYSKVLSPKYSSESSPNLS
Homology
[Close]
BLAST of CmoCh17G012080 vs. ExPASy TrEMBL
Match: A0A6J1JX75 (S-protein homolog OS=Cucurbita maxima OX=3661 GN=LOC111488296 PE=3 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 3.4e-26
Identity = 64/76 (84.21%), Postives = 69/76 (90.79%), Query Frame = 0 

Query: 1  MIRNVAALLLLTVCLVGAQSEVESEKTTIQLPISKYYIHLINDLSIPDMTLHCQSRDDDL 60
          MIRNVAALLL+TV LVGAQ EVES+K  IQ  ISKYYIHLINDLSIPDMT+HC+S DDDL
Sbjct: 1  MIRNVAALLLVTVGLVGAQPEVESQKINIQPLISKYYIHLINDLSIPDMTVHCKSDDDDL 60

Query: 61 GIHHLRKGEDYQFNFK 77
          GIHHL+KGEDYQFNFK
Sbjct: 61 GIHHLQKGEDYQFNFK 76

[Close]
BLAST of CmoCh17G012080 vs. ExPASy TrEMBL
Match: A0A6J1GPD2 (S-protein homolog OS=Cucurbita moschata OX=3662 GN=LOC111456304 PE=3 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 6.7e-22
Identity = 56/76 (73.68%), Postives = 65/76 (85.53%), Query Frame = 0 

Query: 1  MIRNVAALLLLTVCLVGAQSEVESEKTTIQLPISKYYIHLINDLSIPDMTLHCQSRDDDL 60
          MIR VAALLL+TV LVGAQ EV+S+K  I+  ISKYY+HLINDLS PDMT+HC+S DDDL
Sbjct: 1  MIRYVAALLLVTVGLVGAQPEVQSKKINIRPLISKYYVHLINDLSSPDMTVHCKSGDDDL 60

Query: 61 GIHHLRKGEDYQFNFK 77
          G HHL KGED+QF+FK
Sbjct: 61 GFHHLHKGEDFQFHFK 76

[Close]
BLAST of CmoCh17G012080 vs. ExPASy TrEMBL
Match: A0A6J1JVQ8 (S-protein homolog OS=Cucurbita maxima OX=3661 GN=LOC111488297 PE=3 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.8e-19
Identity = 57/78 (73.08%), Postives = 67/78 (85.90%), Query Frame = 0 

Query: 1  MIRNVAALLLLTV--CLVGAQSEVESEKTTIQLPISKYYIHLINDLSIPDMTLHCQSRDD 60
          MIRNVAALLL+TV   LV AQ E ESEKT +Q PISKY+IHL+NDLSIPDMT+HC+S D+
Sbjct: 1  MIRNVAALLLVTVGLSLVEAQLEFESEKTNVQ-PISKYFIHLVNDLSIPDMTVHCKSVDN 60

Query: 61 DLGIHH-LRKGEDYQFNF 76
          DLGI+H L+ G+DYQFNF
Sbjct: 61 DLGIYHSLKLGDDYQFNF 77

[Close]
BLAST of CmoCh17G012080 vs. ExPASy TrEMBL
Match: A0A6J1EYL3 (S-protein homolog OS=Cucurbita moschata OX=3662 GN=LOC111440344 PE=3 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 2.4e-19
Identity = 56/78 (71.79%), Postives = 67/78 (85.90%), Query Frame = 0 

Query: 1  MIRNVAALLLLTV--CLVGAQSEVESEKTTIQLPISKYYIHLINDLSIPDMTLHCQSRDD 60
          MIRNVAALLL+TV   LVGAQ EVESEKT +Q PIS+Y+IH +NDLSIPDMT+HC++ D+
Sbjct: 1  MIRNVAALLLVTVGLGLVGAQLEVESEKTNVQ-PISRYFIHFVNDLSIPDMTVHCKTVDN 60

Query: 61 DLGIHH-LRKGEDYQFNF 76
          DLGIH  L+ G+DYQFNF
Sbjct: 61 DLGIHRSLKLGDDYQFNF 77

[Close]
BLAST of CmoCh17G012080 vs. ExPASy TrEMBL
Match: A0A6J1GPJ8 (S-protein homolog OS=Cucurbita moschata OX=3662 GN=LOC111456305 PE=3 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 6.9e-19
Identity = 51/77 (66.23%), Postives = 63/77 (81.82%), Query Frame = 0 

Query: 1  MIRNVAALLLLTVCLVGAQSEVESEKTTIQLPISKYYIHLINDLSIPDMTLHCQSRDDDL 60
          MIR VAALLL+TV LVGA  EVE EK  I+ P+S+YYIH +NDLSI  M +HCQS+DDDL
Sbjct: 1  MIRIVAALLLVTVSLVGAHLEVEFEKINIKPPLSRYYIHFVNDLSILGMMVHCQSKDDDL 60

Query: 61 GIHH-LRKGEDYQFNFK 77
          G+HH L +G++YQFNF+
Sbjct: 61 GVHHLLNRGDNYQFNFR 77

[Close]
BLAST of CmoCh17G012080 vs. NCBI nr
Match: XP_023549415.1 (S-protein homolog 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 131.0 bits (328), Expect = 6.4e-27
Identity = 64/76 (84.21%), Postives = 68/76 (89.47%), Query Frame = 0 

Query: 1  MIRNVAALLLLTVCLVGAQSEVESEKTTIQLPISKYYIHLINDLSIPDMTLHCQSRDDDL 60
          MIRNVAALLL+TVCLV AQ EVESEK  +Q PISKYYIHLINDLSI DMT+HC+S DDDL
Sbjct: 1  MIRNVAALLLMTVCLVRAQPEVESEKINVQPPISKYYIHLINDLSISDMTVHCKSADDDL 60

Query: 61 GIHHLRKGEDYQFNFK 77
          GIHHL KGEDYQFNFK
Sbjct: 61 GIHHLHKGEDYQFNFK 76

[Close]
BLAST of CmoCh17G012080 vs. NCBI nr
Match: XP_022991763.1 (S-protein homolog 5-like [Cucurbita maxima])

HSP 1 Score: 127.5 bits (319), Expect = 7.0e-26
Identity = 64/76 (84.21%), Postives = 69/76 (90.79%), Query Frame = 0 

Query: 1  MIRNVAALLLLTVCLVGAQSEVESEKTTIQLPISKYYIHLINDLSIPDMTLHCQSRDDDL 60
          MIRNVAALLL+TV LVGAQ EVES+K  IQ  ISKYYIHLINDLSIPDMT+HC+S DDDL
Sbjct: 1  MIRNVAALLLVTVGLVGAQPEVESQKINIQPLISKYYIHLINDLSIPDMTVHCKSDDDDL 60

Query: 61 GIHHLRKGEDYQFNFK 77
          GIHHL+KGEDYQFNFK
Sbjct: 61 GIHHLQKGEDYQFNFK 76

[Close]
BLAST of CmoCh17G012080 vs. NCBI nr
Match: XP_023548645.1 (S-protein homolog 74-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 117.9 bits (294), Expect = 5.6e-23
Identity = 58/76 (76.32%), Postives = 66/76 (86.84%), Query Frame = 0 

Query: 1  MIRNVAALLLLTVCLVGAQSEVESEKTTIQLPISKYYIHLINDLSIPDMTLHCQSRDDDL 60
          MIRNVAALLL+TV LVGAQ EVES+K  I+  ISKYY+HLINDLS PDMT+HC+S D+DL
Sbjct: 1  MIRNVAALLLVTVGLVGAQPEVESKKINIRPLISKYYVHLINDLSSPDMTVHCKSADNDL 60

Query: 61 GIHHLRKGEDYQFNFK 77
          G HHL KGED+QFNFK
Sbjct: 61 GFHHLHKGEDFQFNFK 76

[Close]
BLAST of CmoCh17G012080 vs. NCBI nr
Match: XP_022953901.1 (S-protein homolog 5-like [Cucurbita moschata])

HSP 1 Score: 113.2 bits (282), Expect = 1.4e-21
Identity = 56/76 (73.68%), Postives = 65/76 (85.53%), Query Frame = 0 

Query: 1  MIRNVAALLLLTVCLVGAQSEVESEKTTIQLPISKYYIHLINDLSIPDMTLHCQSRDDDL 60
          MIR VAALLL+TV LVGAQ EV+S+K  I+  ISKYY+HLINDLS PDMT+HC+S DDDL
Sbjct: 1  MIRYVAALLLVTVGLVGAQPEVQSKKINIRPLISKYYVHLINDLSSPDMTVHCKSGDDDL 60

Query: 61 GIHHLRKGEDYQFNFK 77
          G HHL KGED+QF+FK
Sbjct: 61 GFHHLHKGEDFQFHFK 76

[Close]
BLAST of CmoCh17G012080 vs. NCBI nr
Match: XP_023539378.1 (S-protein homolog 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 110.9 bits (276), Expect = 6.8e-21
Identity = 52/62 (83.87%), Postives = 56/62 (90.32%), Query Frame = 0 

Query: 15 LVGAQSEVESEKTTIQLPISKYYIHLINDLSIPDMTLHCQSRDDDLGIHHLRKGEDYQFN 74
          LVGAQ +VESEK  IQ  ISKYYIHLINDLSIPDMT+HC+S DDDLGIHHL+KGEDYQFN
Sbjct: 3  LVGAQPKVESEKINIQPAISKYYIHLINDLSIPDMTVHCKSADDDLGIHHLQKGEDYQFN 62

Query: 75 FK 77
          FK
Sbjct: 63 FK 64

[Close]
BLAST of CmoCh17G012080 vs. TAIR 10
Match: AT5G04350.1 (Plant self-incompatibility protein S1 family )

HSP 1 Score: 40.8 bits (94), Expect = 8.1e-04
Identity = 15/27 (55.56%), Postives = 22/27 (81.48%), Query Frame = 0 

Query: 49 MTLHCQSRDDDLGIHHLRKGEDYQFNF 76
          + +HC+S+DDDLG H L+ G+DY+F F
Sbjct: 41 LKVHCRSKDDDLGEHILKIGQDYEFTF 67

The following BLAST results are available for this feature:
BLAST of CmoCh17G012080 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh17G012080 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1JX753.4e-2684.21S-protein homolog OS=Cucurbita maxima OX=3661 GN=LOC111488296 PE=3 SV=1[more]
A0A6J1GPD26.7e-2273.68S-protein homolog OS=Cucurbita moschata OX=3662 GN=LOC111456304 PE=3 SV=1[more]
A0A6J1JVQ81.8e-1973.08S-protein homolog OS=Cucurbita maxima OX=3661 GN=LOC111488297 PE=3 SV=1[more]
A0A6J1EYL32.4e-1971.79S-protein homolog OS=Cucurbita moschata OX=3662 GN=LOC111440344 PE=3 SV=1[more]
A0A6J1GPJ86.9e-1966.23S-protein homolog OS=Cucurbita moschata OX=3662 GN=LOC111456305 PE=3 SV=1[more]
BLAST of CmoCh17G012080 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023549415.16.4e-2784.21S-protein homolog 1-like [Cucurbita pepo subsp. pepo][more]
XP_022991763.17.0e-2684.21S-protein homolog 5-like [Cucurbita maxima][more]
XP_023548645.15.6e-2376.32S-protein homolog 74-like [Cucurbita pepo subsp. pepo][more]
XP_022953901.11.4e-2173.68S-protein homolog 5-like [Cucurbita moschata][more]
XP_023539378.16.8e-2183.87S-protein homolog 1-like [Cucurbita pepo subsp. pepo][more]
BLAST of CmoCh17G012080 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G04350.18.1e-0455.56Plant self-incompatibility protein S1 family [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010264Plant self-incompatibility S1PFAMPF05938Self-incomp_S1coord: 38..78
e-value: 6.6E-8
score: 33.0

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh17G012080.1CmoCh17G012080.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0060320 rejection of self pollen
cellular_component GO:0005576 extracellular region