Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATAAAGATTGTGGCTGCATTGTTGCTGGTGACGGTGAGTTTGGTCGGGGCTTACCTCGAGGTTGAGTCTGAGAAGATCAATATAAAGCCGCCACTTTTCAGGTATTACATTCATTTCGTGAATGATCTAAGTATCCTCGGTATGATGGTGCACTGCCAGTCGAAGGACGATGATTTGGGAGTTCATCATTTGCTTAATTGGTGAGATAATTACCAATTTAACTTTAGGGTCAACTTTTGGAGAACAACCCTCTTTTGGTGCCAAGTGAATAG
mRNA sequence
ATGATAAAGATTGTGGCTGCATTGTTGCTGGTGACGGTGAGTTTGGTCGGGGCTTACCTCGAGGTTGAGTCTGAGAAGATCAATATAAAGCCGCCACTTTTCAGGTATTACATTCATTTCGTGAATGATCTAAGTATCCTCGGTATGATGGTGCACTGCCAGTCGAAGGACGATGATTTGGGAGGTCAACTTTTGGAGAACAACCCTCTTTTGGTGCCAAGTGAATAG
Coding sequence (CDS)
ATGATAAAGATTGTGGCTGCATTGTTGCTGGTGACGGTGAGTTTGGTCGGGGCTTACCTCGAGGTTGAGTCTGAGAAGATCAATATAAAGCCGCCACTTTTCAGGTATTACATTCATTTCGTGAATGATCTAAGTATCCTCGGTATGATGGTGCACTGCCAGTCGAAGGACGATGATTTGGGAGGTCAACTTTTGGAGAACAACCCTCTTTTGGTGCCAAGTGAATAG
Protein sequence
MIKIVAALLLVTVSLVGAYLEVESEKINIKPPLFRYYIHFVNDLSILGMMVHCQSKDDDLGGQLLENNPLLVPSE
Homology
BLAST of CmoCh17G012070 vs. ExPASy TrEMBL
Match:
A0A6J1GPJ8 (S-protein homolog OS=Cucurbita moschata OX=3662 GN=LOC111456305 PE=3 SV=1)
HSP 1 Score: 111.3 bits (277), Expect = 1.8e-21
Identity = 59/67 (88.06%), Postives = 61/67 (91.04%), Query Frame = 0
Query: 1 MIKIVAALLLVTVSLVGAYLEVESEKINIKPPLFRYYIHFVNDLSILGMMVHCQSKDDDL 60
MI+IVAALLLVTVSLVGA+LEVE EKINIKPPL RYYIHFVNDLSILGMMVHCQSKDDDL
Sbjct: 1 MIRIVAALLLVTVSLVGAHLEVEFEKINIKPPLSRYYIHFVNDLSILGMMVHCQSKDDDL 60
Query: 61 GGQLLEN 68
G L N
Sbjct: 61 GVHHLLN 67
BLAST of CmoCh17G012070 vs. ExPASy TrEMBL
Match:
A0A6J1JTV9 (S-protein homolog OS=Cucurbita maxima OX=3661 GN=LOC111488298 PE=3 SV=1)
HSP 1 Score: 88.2 bits (217), Expect = 1.6e-14
Identity = 44/67 (65.67%), Postives = 54/67 (80.60%), Query Frame = 0
Query: 1 MIKIVAALLLVTVSLVGAYLEVESEKINIKPPLFRYYIHFVNDLSILGMMVHCQSKDDDL 60
MI+ VAALLLVTVS VGA L+VESEK+ +KP +F Y IH VNDL +LG+MVHC+S+DDDL
Sbjct: 1 MIRNVAALLLVTVSFVGAQLDVESEKLKLKPQIFSYTIHLVNDLKVLGIMVHCKSRDDDL 60
Query: 61 GGQLLEN 68
G L +
Sbjct: 61 GVHYLSH 67
BLAST of CmoCh17G012070 vs. ExPASy TrEMBL
Match:
A0A6J1JX75 (S-protein homolog OS=Cucurbita maxima OX=3661 GN=LOC111488296 PE=3 SV=1)
HSP 1 Score: 82.4 bits (202), Expect = 8.7e-13
Identity = 43/61 (70.49%), Postives = 50/61 (81.97%), Query Frame = 0
Query: 1 MIKIVAALLLVTVSLVGAYLEVESEKINIKPPLFRYYIHFVNDLSILGMMVHCQSKDDDL 60
MI+ VAALLLVTV LVGA EVES+KINI+P + +YYIH +NDLSI M VHC+S DDDL
Sbjct: 1 MIRNVAALLLVTVGLVGAQPEVESQKINIQPLISKYYIHLINDLSIPDMTVHCKSDDDDL 60
Query: 61 G 62
G
Sbjct: 61 G 61
BLAST of CmoCh17G012070 vs. ExPASy TrEMBL
Match:
A0A6J1GPL8 (S-protein homolog OS=Cucurbita moschata OX=3662 GN=LOC111456306 PE=3 SV=1)
HSP 1 Score: 82.4 bits (202), Expect = 8.7e-13
Identity = 41/61 (67.21%), Postives = 50/61 (81.97%), Query Frame = 0
Query: 1 MIKIVAALLLVTVSLVGAYLEVESEKINIKPPLFRYYIHFVNDLSILGMMVHCQSKDDDL 60
MI+ VAAL L+TVSLVGA LEVE EKI ++P + RY IH VNDL + G+MVHC+S+DDDL
Sbjct: 1 MIRNVAALFLMTVSLVGAQLEVEFEKIKLEPQITRYTIHLVNDLKVFGIMVHCKSRDDDL 60
Query: 61 G 62
G
Sbjct: 61 G 61
BLAST of CmoCh17G012070 vs. ExPASy TrEMBL
Match:
A0A6J1GPL3 (S-protein homolog OS=Cucurbita moschata OX=3662 GN=LOC111456302 PE=3 SV=1)
HSP 1 Score: 81.3 bits (199), Expect = 1.9e-12
Identity = 43/62 (69.35%), Postives = 50/62 (80.65%), Query Frame = 0
Query: 1 MIKIVAALLLVTVSLVGAYLEVESEKINIKPP-LFRYYIHFVNDLSILGMMVHCQSKDDD 60
MI+ VAAL LV V LVGA LEVESEKIN++PP + Y IH VNDL +LG+ VHC+SKDDD
Sbjct: 1 MIRNVAALFLVMVGLVGAQLEVESEKINVEPPRISSYNIHLVNDLQVLGITVHCKSKDDD 60
Query: 61 LG 62
LG
Sbjct: 61 LG 62
BLAST of CmoCh17G012070 vs. NCBI nr
Match:
XP_023549413.1 (S-protein homolog 6-like [Cucurbita pepo subsp. pepo])
HSP 1 Score: 112.8 bits (281), Expect = 1.2e-21
Identity = 57/61 (93.44%), Postives = 60/61 (98.36%), Query Frame = 0
Query: 1 MIKIVAALLLVTVSLVGAYLEVESEKINIKPPLFRYYIHFVNDLSILGMMVHCQSKDDDL 60
MI+IVAALLLVTVSLVGA+LEVESEKINIKPPL RYYIHFVNDLS+LGMMVHCQSKDDDL
Sbjct: 1 MIRIVAALLLVTVSLVGAHLEVESEKINIKPPLSRYYIHFVNDLSVLGMMVHCQSKDDDL 60
Query: 61 G 62
G
Sbjct: 61 G 61
BLAST of CmoCh17G012070 vs. NCBI nr
Match:
XP_022953902.1 (S-protein homolog 6-like [Cucurbita moschata])
HSP 1 Score: 111.3 bits (277), Expect = 3.6e-21
Identity = 59/67 (88.06%), Postives = 61/67 (91.04%), Query Frame = 0
Query: 1 MIKIVAALLLVTVSLVGAYLEVESEKINIKPPLFRYYIHFVNDLSILGMMVHCQSKDDDL 60
MI+IVAALLLVTVSLVGA+LEVE EKINIKPPL RYYIHFVNDLSILGMMVHCQSKDDDL
Sbjct: 1 MIRIVAALLLVTVSLVGAHLEVEFEKINIKPPLSRYYIHFVNDLSILGMMVHCQSKDDDL 60
Query: 61 GGQLLEN 68
G L N
Sbjct: 61 GVHHLLN 67
BLAST of CmoCh17G012070 vs. NCBI nr
Match:
XP_022991765.1 (S-protein homolog 1-like [Cucurbita maxima])
HSP 1 Score: 88.2 bits (217), Expect = 3.3e-14
Identity = 44/67 (65.67%), Postives = 54/67 (80.60%), Query Frame = 0
Query: 1 MIKIVAALLLVTVSLVGAYLEVESEKINIKPPLFRYYIHFVNDLSILGMMVHCQSKDDDL 60
MI+ VAALLLVTVS VGA L+VESEK+ +KP +F Y IH VNDL +LG+MVHC+S+DDDL
Sbjct: 1 MIRNVAALLLVTVSFVGAQLDVESEKLKLKPQIFSYTIHLVNDLKVLGIMVHCKSRDDDL 60
Query: 61 GGQLLEN 68
G L +
Sbjct: 61 GVHYLSH 67
BLAST of CmoCh17G012070 vs. NCBI nr
Match:
XP_023549414.1 (S-protein homolog 1-like [Cucurbita pepo subsp. pepo])
HSP 1 Score: 83.6 bits (205), Expect = 8.1e-13
Identity = 44/62 (70.97%), Postives = 53/62 (85.48%), Query Frame = 0
Query: 1 MIKIVAALLLVTVSLVGAYLEVESEK-INIKPPLFRYYIHFVNDLSILGMMVHCQSKDDD 60
MI+ VAALLL+TVSLVGA LEVESEK I ++P +F Y IH VNDL +LG+MVHC+S+DDD
Sbjct: 1 MIRNVAALLLMTVSLVGAQLEVESEKFIKLEPRIFSYNIHLVNDLKVLGIMVHCKSRDDD 60
Query: 61 LG 62
LG
Sbjct: 61 LG 62
BLAST of CmoCh17G012070 vs. NCBI nr
Match:
XP_023549418.1 (S-protein homolog 1-like [Cucurbita pepo subsp. pepo])
HSP 1 Score: 83.6 bits (205), Expect = 8.1e-13
Identity = 44/62 (70.97%), Postives = 53/62 (85.48%), Query Frame = 0
Query: 1 MIKIVAALLLVTVSLVGAYLEVESEK-INIKPPLFRYYIHFVNDLSILGMMVHCQSKDDD 60
MI+ VAALLL+TVSLVGA LEVESEK I ++P +F Y IH VNDL +LG+MVHC+S+DDD
Sbjct: 1 MIRNVAALLLMTVSLVGAQLEVESEKFIKLEPRIFSYNIHLVNDLKVLGIMVHCKSRDDD 60
Query: 61 LG 62
LG
Sbjct: 61 LG 62
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1GPJ8 | 1.8e-21 | 88.06 | S-protein homolog OS=Cucurbita moschata OX=3662 GN=LOC111456305 PE=3 SV=1 | [more] |
A0A6J1JTV9 | 1.6e-14 | 65.67 | S-protein homolog OS=Cucurbita maxima OX=3661 GN=LOC111488298 PE=3 SV=1 | [more] |
A0A6J1JX75 | 8.7e-13 | 70.49 | S-protein homolog OS=Cucurbita maxima OX=3661 GN=LOC111488296 PE=3 SV=1 | [more] |
A0A6J1GPL8 | 8.7e-13 | 67.21 | S-protein homolog OS=Cucurbita moschata OX=3662 GN=LOC111456306 PE=3 SV=1 | [more] |
A0A6J1GPL3 | 1.9e-12 | 69.35 | S-protein homolog OS=Cucurbita moschata OX=3662 GN=LOC111456302 PE=3 SV=1 | [more] |
Match Name | E-value | Identity | Description | |