CmoCh17G012070 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh17G012070
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionS-protein homolog
LocationCmo_Chr17: 9682007 .. 9682281 (-)
RNA-Seq ExpressionCmoCh17G012070
SyntenyCmoCh17G012070
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATAAAGATTGTGGCTGCATTGTTGCTGGTGACGGTGAGTTTGGTCGGGGCTTACCTCGAGGTTGAGTCTGAGAAGATCAATATAAAGCCGCCACTTTTCAGGTATTACATTCATTTCGTGAATGATCTAAGTATCCTCGGTATGATGGTGCACTGCCAGTCGAAGGACGATGATTTGGGAGTTCATCATTTGCTTAATTGGTGAGATAATTACCAATTTAACTTTAGGGTCAACTTTTGGAGAACAACCCTCTTTTGGTGCCAAGTGAATAG

mRNA sequence

ATGATAAAGATTGTGGCTGCATTGTTGCTGGTGACGGTGAGTTTGGTCGGGGCTTACCTCGAGGTTGAGTCTGAGAAGATCAATATAAAGCCGCCACTTTTCAGGTATTACATTCATTTCGTGAATGATCTAAGTATCCTCGGTATGATGGTGCACTGCCAGTCGAAGGACGATGATTTGGGAGGTCAACTTTTGGAGAACAACCCTCTTTTGGTGCCAAGTGAATAG

Coding sequence (CDS)

ATGATAAAGATTGTGGCTGCATTGTTGCTGGTGACGGTGAGTTTGGTCGGGGCTTACCTCGAGGTTGAGTCTGAGAAGATCAATATAAAGCCGCCACTTTTCAGGTATTACATTCATTTCGTGAATGATCTAAGTATCCTCGGTATGATGGTGCACTGCCAGTCGAAGGACGATGATTTGGGAGGTCAACTTTTGGAGAACAACCCTCTTTTGGTGCCAAGTGAATAG

Protein sequence

MIKIVAALLLVTVSLVGAYLEVESEKINIKPPLFRYYIHFVNDLSILGMMVHCQSKDDDLGGQLLENNPLLVPSE
Homology
BLAST of CmoCh17G012070 vs. ExPASy TrEMBL
Match: A0A6J1GPJ8 (S-protein homolog OS=Cucurbita moschata OX=3662 GN=LOC111456305 PE=3 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 1.8e-21
Identity = 59/67 (88.06%), Postives = 61/67 (91.04%), Query Frame = 0

Query: 1  MIKIVAALLLVTVSLVGAYLEVESEKINIKPPLFRYYIHFVNDLSILGMMVHCQSKDDDL 60
          MI+IVAALLLVTVSLVGA+LEVE EKINIKPPL RYYIHFVNDLSILGMMVHCQSKDDDL
Sbjct: 1  MIRIVAALLLVTVSLVGAHLEVEFEKINIKPPLSRYYIHFVNDLSILGMMVHCQSKDDDL 60

Query: 61 GGQLLEN 68
          G   L N
Sbjct: 61 GVHHLLN 67

BLAST of CmoCh17G012070 vs. ExPASy TrEMBL
Match: A0A6J1JTV9 (S-protein homolog OS=Cucurbita maxima OX=3661 GN=LOC111488298 PE=3 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.6e-14
Identity = 44/67 (65.67%), Postives = 54/67 (80.60%), Query Frame = 0

Query: 1  MIKIVAALLLVTVSLVGAYLEVESEKINIKPPLFRYYIHFVNDLSILGMMVHCQSKDDDL 60
          MI+ VAALLLVTVS VGA L+VESEK+ +KP +F Y IH VNDL +LG+MVHC+S+DDDL
Sbjct: 1  MIRNVAALLLVTVSFVGAQLDVESEKLKLKPQIFSYTIHLVNDLKVLGIMVHCKSRDDDL 60

Query: 61 GGQLLEN 68
          G   L +
Sbjct: 61 GVHYLSH 67

BLAST of CmoCh17G012070 vs. ExPASy TrEMBL
Match: A0A6J1JX75 (S-protein homolog OS=Cucurbita maxima OX=3661 GN=LOC111488296 PE=3 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 8.7e-13
Identity = 43/61 (70.49%), Postives = 50/61 (81.97%), Query Frame = 0

Query: 1  MIKIVAALLLVTVSLVGAYLEVESEKINIKPPLFRYYIHFVNDLSILGMMVHCQSKDDDL 60
          MI+ VAALLLVTV LVGA  EVES+KINI+P + +YYIH +NDLSI  M VHC+S DDDL
Sbjct: 1  MIRNVAALLLVTVGLVGAQPEVESQKINIQPLISKYYIHLINDLSIPDMTVHCKSDDDDL 60

Query: 61 G 62
          G
Sbjct: 61 G 61

BLAST of CmoCh17G012070 vs. ExPASy TrEMBL
Match: A0A6J1GPL8 (S-protein homolog OS=Cucurbita moschata OX=3662 GN=LOC111456306 PE=3 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 8.7e-13
Identity = 41/61 (67.21%), Postives = 50/61 (81.97%), Query Frame = 0

Query: 1  MIKIVAALLLVTVSLVGAYLEVESEKINIKPPLFRYYIHFVNDLSILGMMVHCQSKDDDL 60
          MI+ VAAL L+TVSLVGA LEVE EKI ++P + RY IH VNDL + G+MVHC+S+DDDL
Sbjct: 1  MIRNVAALFLMTVSLVGAQLEVEFEKIKLEPQITRYTIHLVNDLKVFGIMVHCKSRDDDL 60

Query: 61 G 62
          G
Sbjct: 61 G 61

BLAST of CmoCh17G012070 vs. ExPASy TrEMBL
Match: A0A6J1GPL3 (S-protein homolog OS=Cucurbita moschata OX=3662 GN=LOC111456302 PE=3 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.9e-12
Identity = 43/62 (69.35%), Postives = 50/62 (80.65%), Query Frame = 0

Query: 1  MIKIVAALLLVTVSLVGAYLEVESEKINIKPP-LFRYYIHFVNDLSILGMMVHCQSKDDD 60
          MI+ VAAL LV V LVGA LEVESEKIN++PP +  Y IH VNDL +LG+ VHC+SKDDD
Sbjct: 1  MIRNVAALFLVMVGLVGAQLEVESEKINVEPPRISSYNIHLVNDLQVLGITVHCKSKDDD 60

Query: 61 LG 62
          LG
Sbjct: 61 LG 62

BLAST of CmoCh17G012070 vs. NCBI nr
Match: XP_023549413.1 (S-protein homolog 6-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 112.8 bits (281), Expect = 1.2e-21
Identity = 57/61 (93.44%), Postives = 60/61 (98.36%), Query Frame = 0

Query: 1  MIKIVAALLLVTVSLVGAYLEVESEKINIKPPLFRYYIHFVNDLSILGMMVHCQSKDDDL 60
          MI+IVAALLLVTVSLVGA+LEVESEKINIKPPL RYYIHFVNDLS+LGMMVHCQSKDDDL
Sbjct: 1  MIRIVAALLLVTVSLVGAHLEVESEKINIKPPLSRYYIHFVNDLSVLGMMVHCQSKDDDL 60

Query: 61 G 62
          G
Sbjct: 61 G 61

BLAST of CmoCh17G012070 vs. NCBI nr
Match: XP_022953902.1 (S-protein homolog 6-like [Cucurbita moschata])

HSP 1 Score: 111.3 bits (277), Expect = 3.6e-21
Identity = 59/67 (88.06%), Postives = 61/67 (91.04%), Query Frame = 0

Query: 1  MIKIVAALLLVTVSLVGAYLEVESEKINIKPPLFRYYIHFVNDLSILGMMVHCQSKDDDL 60
          MI+IVAALLLVTVSLVGA+LEVE EKINIKPPL RYYIHFVNDLSILGMMVHCQSKDDDL
Sbjct: 1  MIRIVAALLLVTVSLVGAHLEVEFEKINIKPPLSRYYIHFVNDLSILGMMVHCQSKDDDL 60

Query: 61 GGQLLEN 68
          G   L N
Sbjct: 61 GVHHLLN 67

BLAST of CmoCh17G012070 vs. NCBI nr
Match: XP_022991765.1 (S-protein homolog 1-like [Cucurbita maxima])

HSP 1 Score: 88.2 bits (217), Expect = 3.3e-14
Identity = 44/67 (65.67%), Postives = 54/67 (80.60%), Query Frame = 0

Query: 1  MIKIVAALLLVTVSLVGAYLEVESEKINIKPPLFRYYIHFVNDLSILGMMVHCQSKDDDL 60
          MI+ VAALLLVTVS VGA L+VESEK+ +KP +F Y IH VNDL +LG+MVHC+S+DDDL
Sbjct: 1  MIRNVAALLLVTVSFVGAQLDVESEKLKLKPQIFSYTIHLVNDLKVLGIMVHCKSRDDDL 60

Query: 61 GGQLLEN 68
          G   L +
Sbjct: 61 GVHYLSH 67

BLAST of CmoCh17G012070 vs. NCBI nr
Match: XP_023549414.1 (S-protein homolog 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 83.6 bits (205), Expect = 8.1e-13
Identity = 44/62 (70.97%), Postives = 53/62 (85.48%), Query Frame = 0

Query: 1  MIKIVAALLLVTVSLVGAYLEVESEK-INIKPPLFRYYIHFVNDLSILGMMVHCQSKDDD 60
          MI+ VAALLL+TVSLVGA LEVESEK I ++P +F Y IH VNDL +LG+MVHC+S+DDD
Sbjct: 1  MIRNVAALLLMTVSLVGAQLEVESEKFIKLEPRIFSYNIHLVNDLKVLGIMVHCKSRDDD 60

Query: 61 LG 62
          LG
Sbjct: 61 LG 62

BLAST of CmoCh17G012070 vs. NCBI nr
Match: XP_023549418.1 (S-protein homolog 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 83.6 bits (205), Expect = 8.1e-13
Identity = 44/62 (70.97%), Postives = 53/62 (85.48%), Query Frame = 0

Query: 1  MIKIVAALLLVTVSLVGAYLEVESEK-INIKPPLFRYYIHFVNDLSILGMMVHCQSKDDD 60
          MI+ VAALLL+TVSLVGA LEVESEK I ++P +F Y IH VNDL +LG+MVHC+S+DDD
Sbjct: 1  MIRNVAALLLMTVSLVGAQLEVESEKFIKLEPRIFSYNIHLVNDLKVLGIMVHCKSRDDD 60

Query: 61 LG 62
          LG
Sbjct: 61 LG 62

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1GPJ81.8e-2188.06S-protein homolog OS=Cucurbita moschata OX=3662 GN=LOC111456305 PE=3 SV=1[more]
A0A6J1JTV91.6e-1465.67S-protein homolog OS=Cucurbita maxima OX=3661 GN=LOC111488298 PE=3 SV=1[more]
A0A6J1JX758.7e-1370.49S-protein homolog OS=Cucurbita maxima OX=3661 GN=LOC111488296 PE=3 SV=1[more]
A0A6J1GPL88.7e-1367.21S-protein homolog OS=Cucurbita moschata OX=3662 GN=LOC111456306 PE=3 SV=1[more]
A0A6J1GPL31.9e-1269.35S-protein homolog OS=Cucurbita moschata OX=3662 GN=LOC111456302 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
XP_023549413.11.2e-2193.44S-protein homolog 6-like [Cucurbita pepo subsp. pepo][more]
XP_022953902.13.6e-2188.06S-protein homolog 6-like [Cucurbita moschata][more]
XP_022991765.13.3e-1465.67S-protein homolog 1-like [Cucurbita maxima][more]
XP_023549414.18.1e-1370.97S-protein homolog 1-like [Cucurbita pepo subsp. pepo][more]
XP_023549418.18.1e-1370.97S-protein homolog 1-like [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh17G012070.1CmoCh17G012070.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0060320 rejection of self pollen
cellular_component GO:0005576 extracellular region