CmoCh17G003960 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh17G003960
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	LINE-1 retrotransposable element ORF2 protein
Location	Cmo_Chr17: 2585707 .. 2589354 (+)
RNA-Seq Expression	CmoCh17G003960
Synteny	CmoCh17G003960

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCTTGGTCCAGCTTCAACAATTTGAACCTCTTCTGGACGCAACCTCCCTACTAACTCAAATTTCTAAGGACGCCGACGTGAGATTCACCGCGTTTATGCTCTCGTTAATTGCCTCGCACACTTCCCCTCGCTTCGTCGCAACGCTGCAAATGTCGTGCCGATTGTTCACCAACTACTCCGTCGACCATTATTACAGTTCGAAGGTTTCCCTCGAGTCCTTCCACGATGCTATGTTGGATGGTGGAAGTTTTTCTTCAATGTCAATCCATGTTTTGGAATCAAGACAACAAATGATCCTTAGATATGAGAATCCATCAAGTTAGTATACAAGAAACAACAATCTTGTTTCTTTTGGTTTCAAGAACATAATTTCCTTCAAATTCTTTCAAGAAAATCACTTAAATTTCTTCATTATTTCCCTTTTAGGCAATGACCCACCATTGTATCTTGAATTGCCATTGTCACCACCACAAGCCGAGAGCTTAGGCCAAGTTGAATATGGCAAATTTTTCACTGTTAATTCTAAAGTGTTAAGGAAAATTATAAAAGAATTGCCTCTCTTCCACGATGATTTAGGTATCAATTCTCTCTCTCTCTTTTTTTTTTTTTTTCTTTCAAATTTGATTTTGTTTTTGATTTCGATACCTTGTTTATATGTCATAGTTCGTGTCGCTGCAACGAGTACTCGAGTCAAGTTCTCAATAGCATCTAAGGAGATTACTGTTACTAAAGAGGTATTATATTGTTCATGTTCATCTCAAAAGCTTACAATTTGAAAGAAATTAAGCAAAATAAAAGCTTTAAAATTGCTTGATTTTGAACAGAGTGGAAATTGTAGGATCGTAGGTTATGAAGGAGAAGATGAAACTGAGCTGCATATCACTTTTCGTCCCATGATGTTTTTCCTTAATTTTACGTATAAAGCGAATAGGGTTTGGTTTTATAAGACAACTAATTCTCAAAGTGTAATTAGTGTCCCAGCTTTTGGGATGTATGGTCAATATGTGGTCTATTTTCCCAAATTATGATCAAAATATTGAATACTCAAATGGCCGAAGATTTTGTTATGAATGTGAATTTCTTATAATGTATTTTGTCATTCTCACAAGTAGCATATTTACTAGGAGACGTCATATCGTAATTTTGTTATGAATTTCGAATACCTTACCCTTACCTCTCGAGCTCAACAAAACAAAGTTAATATGTGTGGTGCATATAAATAAACTGATACCACATCTGAATAAAAGTGGTATTATAAATATGAAAGTTAAGAAGTGCTTTTGAAAGTTACCATTTGTTAAAATAAAATGCATATTCCTTTCTGGTGTCTCGACCAGAGATTTTCTTTGAATAATTTTATACTTGGTGATTTCTAGTAAATTTTCTTAGTAACCGTGAGTGAGGCACAATATGCTGAAAGAATTTGTATTAATTTGTGAGGAAAGAATTTGTATTAATTTGTGAGGATAGTTTTTACTCGTGGATGCTGAAGGCAGGACCGTTCATGTATTAAGATGAAAAAAAAAAAAACTTGCTAGCAATACTTTTGGCTTTAGTTTTGTAGTGTTACGATATTGATAGACTTGACTTGTAAACTCTTTTGTAATAGTAATTGGTTGCCGCTCGTGGATGTAGGAAAATTTCTTCTCTTCAAATCTCGTAAATTTTTGTGTCGATTTGTTTATTTTTATTCGTGGGTGTATGATTGCGATCAATTTTGCTTTAGCTTCCGTTACAACAATGGCTATTATTCAAGGAAATATGAAAAGCAAATCCACATGTGAGCACGTCTAGTGGTCATGAAGTTAAGTCTTTCATAATATCCCAAATACCACAACTTGTACTCTAATACCACTTGTTGTGTCGTAACTTTCAATGCTGACATTTAATGCTTTAATACTCAATTGTTGTAGCCCAAATGGCACAATCAAAATGTTATGATACTCAATTGTTGTAGCCCAAATGCCACAACGAAAATGTTATGATACCTAATTGTTGTAGCAGAAGCGAAAGCAAGATCGATCACACTCACACACCCACTAACAAAAATTAAACAAAGAGACACAAAGATTTACGTGGTTTGGAGAAAAAAATTCTCTTACATCTACGAGTGGTAGCCAATTACTATAACAAAAGTGTTTATAAGCTTATCTCTCACACTCTCCCCCTACAAAAATTCTCTCAATTATCTTTAGGAAAATACAAGATGACAATGACTCCCCACCTAAAAAAAAAAAAAAAATGATAGACAAGCATTTATATAGACATAACAATACCGATTCTCAAACCAAATAAATGAGAATATGAAACAAAATGGTTATAAAAAAAAAAAAAGAGAGTTAGTAACCAAAATAAATGAGAATATGAAACAAAATAGTTATGAACTAAATGAGAATTTTGACAATATATCTTCATACACTAAGATGTGCCTATCATGTGAGCCTATCATGTGGGGATAATTAGGGGACTTGCTAACCCACCTCTAACCGTGAACGAATCTCGATTGACAAGAGTTTGCATTGCGATGTCAAAGATAATGCTATGAAACTTTTGGGATTTGATCTAATAACCCTGTTGAAAAACAAGGCCTTTAGATCTAAATTATTGAAAAACTCAAAAAACGACAAGATTCTACCTGAAGGAAAGTTTTGGAATAGATTACCTTGATGATCAAAATCGAGAGTAAAGCAAACTCGTTTCTAAACTTGTAATTCGAATAACTCTACAGGAGGTTTGTTCAATACCACTTGACTATAGCATGAAATTTTAAACACCGAATTTGCCAAAGAAAAAACTTAGCTTTCAACTAAACTAAAATAAAAACTCTATTTTTTTTCAGTTGCAAAATGTGATGTCGACCATAAGAGAAGGCTTTACATAGCTTTTGAGGATTACATTATAACCGAACTCCCATATTAAAACCTAATCTAAATAAAAATTAAAATAATGCAATAAAACAAATGTGTTATATCGAGTAACCATCTTTGTACTAAAATTCATAAATTCAACTATGAGTTCATTAAATGTAAATTAAAATGCATCTAATGCATCTCTATTTTGAAACTCAACTTTGTACAATAGGTAGGGAAAGATTCCAACATCTTCTAGAATTTCCTTTAACGAGTCCATCATAGCTTGAATACAAGTGACTAAAGCTCGTTGTAACTTCTTTACTTTTGTCCTTGTAATTCGGCCTTGAGGTATGAAAATTCCTCGATCTTGATTCATATCAGACGGAGTCACTTTTTATAATTTACTGAACGATGCATGGACTATTAGGAGTAGCCAGCTAATCGATAGAAATCTATATGGATGAGCAAGAGTTGGTATCAATAGGATGGTGCCCTGAATATAAAATGATCCATAGACCAGAAGATTTGTTCTACCTTACCCATTTATCATGTTGATCTTCGGCCTTAAACACATCCATCGGTTCTTTAGGGCATGTTGTCTACTCACTCAACTTAATGAAACAGCCCACGTTGAATTCTCGAGATCCATGTTCTCAATCAAAGTCTCCTACTTTTCCCCTCACTTCGTAGCAGCATTAGGCTTCAAACCTTCGTTCTTTTTCTGTTACATCAATTCAGATACACAGCTTTGCACTCGGAGGATTCCACTCAAGAAATTCTGCCATTATTTGA

mRNA sequence

ATGTTCTTGGTCCAGCTTCAACAATTTGAACCTCTTCTGGACGCAACCTCCCTACTAACTCAAATTTCTAAGGACGCCGACGTGAGATTCACCGCGTTTATGCTCTCGTTAATTGCCTCGCACACTTCCCCTCGCTTCGTCGCAACGCTGCAAATGTCGTGCCGATTGTTCACCAACTACTCCGTCGACCATTATTACAGTTCGAAGGTTTCCCTCGAGTCCTTCCACGATGCTATGTTGGATGGTGGAAGTTTTTCTTCAATGTCAATCCATGTTTTGGAATCAAGACAACAAATGATCCTTAGATATGAGAATCCATCAAGCAATGACCCACCATTGTATCTTGAATTGCCATTGTCACCACCACAAGCCGAGAGCTTAGGCCAAGTTGAATATGGCAAATTTTTCACTGTTAATTCTAAAGTGTTAAGGAAAATTATAAAAGAATTGCCTCTCTTCCACGATGATTTAGTTCGTGTCGCTGCAACGAGTACTCGAGTCAAGTTCTCAATAGCATCTAAGGAGATTACTGTTACTAAAGAGATACACAGCTTTGCACTCGGAGGATTCCACTCAAGAAATTCTGCCATTATTTGA

Coding sequence (CDS)

ATGTTCTTGGTCCAGCTTCAACAATTTGAACCTCTTCTGGACGCAACCTCCCTACTAACTCAAATTTCTAAGGACGCCGACGTGAGATTCACCGCGTTTATGCTCTCGTTAATTGCCTCGCACACTTCCCCTCGCTTCGTCGCAACGCTGCAAATGTCGTGCCGATTGTTCACCAACTACTCCGTCGACCATTATTACAGTTCGAAGGTTTCCCTCGAGTCCTTCCACGATGCTATGTTGGATGGTGGAAGTTTTTCTTCAATGTCAATCCATGTTTTGGAATCAAGACAACAAATGATCCTTAGATATGAGAATCCATCAAGCAATGACCCACCATTGTATCTTGAATTGCCATTGTCACCACCACAAGCCGAGAGCTTAGGCCAAGTTGAATATGGCAAATTTTTCACTGTTAATTCTAAAGTGTTAAGGAAAATTATAAAAGAATTGCCTCTCTTCCACGATGATTTAGTTCGTGTCGCTGCAACGAGTACTCGAGTCAAGTTCTCAATAGCATCTAAGGAGATTACTGTTACTAAAGAGATACACAGCTTTGCACTCGGAGGATTCCACTCAAGAAATTCTGCCATTATTTGA

Protein sequence

MFLVQLQQFEPLLDATSLLTQISKDADVRFTAFMLSLIASHTSPRFVATLQMSCRLFTNYSVDHYYSSKVSLESFHDAMLDGGSFSSMSIHVLESRQQMILRYENPSSNDPPLYLELPLSPPQAESLGQVEYGKFFTVNSKVLRKIIKELPLFHDDLVRVAATSTRVKFSIASKEITVTKEIHSFALGGFHSRNSAII

Homology

[Close]

BLAST of CmoCh17G003960 vs. ExPASy TrEMBL
Match: A0A1S3C8J1 (uncharacterized protein LOC103498010 OS=Cucumis melo OX=3656 GN=LOC103498010 PE=4 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 1.9e-62
Identity = 127/181 (70.17%), Postives = 153/181 (84.53%), Query Frame = 0


Query: 1   MFLVQLQQFEPLLDATSLLTQISKDADVRFTAFMLSLIASHTSPRFVATLQMSCRLFTNY 60
           MFLV+L+QFEPL+DATSLL Q++KDADV+FT  ML +I S+ SP+FVATLQ+S RLFTN+
Sbjct: 1   MFLVRLEQFEPLIDATSLLAQVAKDADVKFTPLMLMIIVSNRSPQFVATLQLSRRLFTNF 60

Query: 61  SVDHYYSSKVSLESFHDAMLDGGSFSSMSIHVLESRQQMILRYENPSSNDPPLYLELPLS 120
           SVDH  SSKVSL+ FHDAMLDGGSFSSM+IH+L++  QM+LR+E PS + PPL+ EL LS
Sbjct: 61  SVDHNKSSKVSLQPFHDAMLDGGSFSSMTIHLLDTTNQMVLRFETPSHDVPPLHHELALS 120

Query: 121 PPQAESLGQVEYGKFFTVNSKVLRKIIKELPLFHDDLVRVAATSTRVKFSIASKEITVTK 180
           PPQAE+LGQVEYG FFTV S+ LR+IIKELPLFH D V V  T ++VKFSI SKEI +TK
Sbjct: 121 PPQAENLGQVEYGNFFTVTSRELRRIIKELPLFHQDTVSVTVTGSQVKFSIQSKEIILTK 180

Query: 181 E 182
           E
Sbjct: 181 E 181

[Close]

BLAST of CmoCh17G003960 vs. ExPASy TrEMBL
Match: A0A5D3BTK3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold46G00820 PE=4 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 1.1e-49
Identity = 113/182 (62.09%), Postives = 134/182 (73.63%), Query Frame = 0


Query: 1   MFLVQLQQFEPLLDATSLLTQISKDADVRFTAFMLSLIASHTSPRFVATLQMSCRLFTNY 60
           MFLV+L+QFEPL+DATSLL Q++KDADV+FT  ML +I S+ SP+FVATLQ+S RLFTN+
Sbjct: 1   MFLVRLEQFEPLIDATSLLAQVAKDADVKFTPLMLMIIVSNRSPQFVATLQLSRRLFTNF 60

Query: 61  SVDHYYSSKVSLESFHDAMLDGGSFSSMSIHVLESRQQMILRYENPSSNDPPLYLELPLS 120
           SVDH  SSKVSL+ FHDAMLDGG                       S + PPL+ EL LS
Sbjct: 61  SVDHNKSSKVSLQPFHDAMLDGG-----------------------SHDVPPLHHELALS 120

Query: 121 PPQAESLGQVEYGKFFTVNSKVLRKIIKELPLFHDDLVRVAATSTRVKFSIASKEITVTK 180
           PPQAE+LGQVEYG FFTV S+ LR+IIKELPLFH D V V  T ++VKFSI SKEI +TK
Sbjct: 121 PPQAENLGQVEYGNFFTVTSRELRRIIKELPLFHQDTVSVTVTGSQVKFSIQSKEIILTK 159

Query: 181 EI 183
           E+
Sbjct: 181 EV 159

[Close]

BLAST of CmoCh17G003960 vs. ExPASy TrEMBL
Match: A0A5D3DZ07 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1810G00070 PE=4 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 5.8e-48
Identity = 114/189 (60.32%), Postives = 146/189 (77.25%), Query Frame = 0


Query: 1   MFLVQLQQFEPLLDATSLLTQISKD-ADVRFTAFMLSLIASHTSPRFVATLQMSCRLFTN 60
           MFLV+L+ F+PLLDATS L QIS D AD++FT     +IASH SPRF+ATLQ+S + FT 
Sbjct: 1   MFLVKLKNFDPLLDATSFLAQISFDNADLKFTPSKFFIIASHRSPRFIATLQLSPQWFTT 60

Query: 61  YSVDHYYSSKVSLESFHDAMLDGGSFSSMSIHVLESRQQMILRYENPSSNDPPLYLELPL 120
           +SVD+ +SSKVSLESFHDA+LDGGSF+SM+IH+L+   QMILR++ PSS   PL+ EL L
Sbjct: 61  FSVDNDHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQMILRFDTPSSEIQPLHHELTL 120

Query: 121 SPPQAE--SLGQVEYG--KFFTVNSKVLRKIIKELPLF-HDDLVRVAATSTRVKFSIASK 180
           SPPQAE   +GQ E    K+F V SK LR+IIK+LP+F +D ++ V  T++RVKFSIASK
Sbjct: 121 SPPQAEDNQIGQHELDERKYFIVKSKALRRIIKDLPIFQNDSIISVDVTNSRVKFSIASK 180

Query: 181 EITVTKEIH 184
           EI +T+  H
Sbjct: 181 EIILTEGRH 189

[Close]

BLAST of CmoCh17G003960 vs. ExPASy TrEMBL
Match: A0A1S4E4N8 (uncharacterized protein LOC103502263 OS=Cucumis melo OX=3656 GN=LOC103502263 PE=4 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 5.8e-48
Identity = 102/181 (56.35%), Postives = 144/181 (79.56%), Query Frame = 0


Query: 1   MFLVQLQQFEPLLDATSLLTQISKDADVRFTAFMLSLIASHTSPRFVATLQMSCRLFTNY 60
           MFLV+L+ F+PL DATS L QI+++AD++FT    S+IAS+ SPRFVA LQM+   F NY
Sbjct: 3   MFLVRLKDFDPLFDATSRLAQIAREADIKFTPLFFSIIASNRSPRFVAYLQMTHHCFINY 62

Query: 61  SVDHYYSSKVSLESFHDAMLDGGSFSSMSIHVLESRQQMILRYENPSSNDPPLYLELPLS 120
            VD+ ++S++SLESFHDA+LDGG+  SM+IH+L + +Q+ILR+E+ SS+ P ++ EL L+
Sbjct: 63  KVDNDHTSRISLESFHDALLDGGASPSMTIHLLANIKQLILRFES-SSHAPKVHHELSLT 122

Query: 121 PPQAESLGQVEYGKFFTVNSKVLRKIIKELPLFHDDLVRVAATSTRVKFSIASKEITVTK 180
           P Q E LG+V+Y KFF+++SK LR++I+ LP+FH D + V AT ++VKFSIASKEI +TK
Sbjct: 123 PSQEEDLGEVDYAKFFSIDSKDLRRVIRNLPIFHGDSICVTATGSQVKFSIASKEIVLTK 182

Query: 181 E 182
           E
Sbjct: 183 E 182

[Close]

BLAST of CmoCh17G003960 vs. ExPASy TrEMBL
Match: A0A1S3CL88 (uncharacterized protein LOC103502250 OS=Cucumis melo OX=3656 GN=LOC103502250 PE=4 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 5.8e-48
Identity = 114/189 (60.32%), Postives = 146/189 (77.25%), Query Frame = 0


Query: 1   MFLVQLQQFEPLLDATSLLTQISKD-ADVRFTAFMLSLIASHTSPRFVATLQMSCRLFTN 60
           MFLV+L+ F+PLLDATS L QIS D AD++FT     +IASH SPRF+ATLQ+S + FT 
Sbjct: 1   MFLVKLKNFDPLLDATSFLAQISFDNADLKFTPSKFFIIASHRSPRFIATLQLSPQWFTT 60

Query: 61  YSVDHYYSSKVSLESFHDAMLDGGSFSSMSIHVLESRQQMILRYENPSSNDPPLYLELPL 120
           +SVD+ +SSKVSLESFHDA+LDGGSF+SM+IH+L+   QMILR++ PSS   PL+ EL L
Sbjct: 61  FSVDNDHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQMILRFDTPSSEIQPLHHELTL 120

Query: 121 SPPQAE--SLGQVEYG--KFFTVNSKVLRKIIKELPLF-HDDLVRVAATSTRVKFSIASK 180
           SPPQAE   +GQ E    K+F V SK LR+IIK+LP+F +D ++ V  T++RVKFSIASK
Sbjct: 121 SPPQAEDNQIGQHELDERKYFIVKSKALRRIIKDLPIFQNDSIISVDVTNSRVKFSIASK 180

Query: 181 EITVTKEIH 184
           EI +T+  H
Sbjct: 181 EIILTEGRH 189

The following BLAST results are available for this feature:

BLAST of CmoCh17G003960 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh17G003960 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3C8J1	1.9e-62	70.17	uncharacterized protein LOC103498010 OS=Cucumis melo OX=3656 GN=LOC103498010 PE=...	[more]
A0A5D3BTK3	1.1e-49	62.09	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3DZ07	5.8e-48	60.32	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A1S4E4N8	5.8e-48	56.35	uncharacterized protein LOC103502263 OS=Cucumis melo OX=3656 GN=LOC103502263 PE=...	[more]
A0A1S3CL88	5.8e-48	60.32	uncharacterized protein LOC103502250 OS=Cucumis melo OX=3656 GN=LOC103502250 PE=...	[more]

BLAST of CmoCh17G003960 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.70.10.10		coord: 1..189 e-value: 2.1E-18 score: 68.6
None	No IPR available	SUPERFAMILY	55979	DNA clamp	coord: 1..105

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh17G003960.1	CmoCh17G003960.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane