CmoCh15G014840 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh15G014840
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionLRR receptor-like serine/threonine-protein kinase GSO1
LocationCmo_Chr15: 10067255 .. 10068236 (+)
RNA-Seq ExpressionCmoCh15G014840
SyntenyCmoCh15G014840
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAGACCAATGGCCTCAAGACTCATCTAATTTACCCTCACCCGAAGACGTTATGAACTTTTTTCAAAATGTTCTTGGAGACTATCCTTATGCTCGTGATAATGTTCGAAGCCAAATTCTAATTTTCTTTTTCTTCAATAATATTCTTTATTTGTGTTTTGTATATTCATAAATAATACTAATCTAAAATGTTTGTAGGAAGTTGTTCAAGAATCATACGACAGGAGAACTTTCAACCGTGGATATCAGAACTTTGGTGGCAGTTCTCAGTATATGAATGATTTCTATCCAAGATTCGAGCACTTACAGATGAACCCAACTTATATCAGTAAGAACCAAACAAACAAAGAATTCATTCCATAGACATTAACTTCCTTAATTTGAGAGGGTAATTAGCAAAGAATAGGACGAAAAAAATGACATCATTTTTGTTGTCATTTGCAGGACATGACGAGGATGACAACAAGGTTGACAAAAAGGATGACAACAAGGTTGACAAAAAGGATGACAAAAATGTGAGCAAAGGATTGTCTAGAGAACTTATGTTGAAGTTGCCATCTCACGAACACAAGGGCAGTTCATCAAAGTGGTTTGGCAAATCCTCTCAAAAGCATAAGTATTGTCTCCCTCTTGCTTCTTGCTATCATCTTTTGCTACGATCAAAATCTTTTTTTGCATTATCGTAACATAAAATCACTCGAGAAAATTTCAAAAGCATTTGGCTAAGTGTTAGCTCTAAAATTCAAACACCGTCTTACTTTTCTATTAGCTTATCAAGGACGTGTTCGATCACTGAGTCAATATCCTTTCTAGGGTGGTATTGCCTTGCTCCAATATTAGCTTTTGAGAATAGGAAACCGAGTCCGTAAAGCTTTGCTAATTTTTCATTTTTAAAACCCTTATGCTAAAAGTGAATACGAACGTGATTAAGTGGTAAAGACATTAATTTATTTATAGTTCTTTTTTTTTTTAGATTTTAA

mRNA sequence

ATGGGAGACCAATGGCCTCAAGACTCATCTAATTTACCCTCACCCGAAGACGTTATGAACTTTTTTCAAAATGTTCTTGGAGACTATCCTTATGCTCGTGATAATGAAGTTGTTCAAGAATCATACGACAGGAGAACTTTCAACCGTGGATATCAGAACTTTGGTGGCAGTTCTCAGTATATGAATGATTTCTATCCAAGATTCGAGCACTTACAGATGAACCCAACTTATATCAGACATGACGAGGATGACAACAAGGTTGACAAAAAGGATGACAACAAGGTTGACAAAAAGGATGACAAAAATGTGAGCAAAGGATTGTCTAGAGAACTTATGTTGAAGTTGCCATCTCACGAACACAAGGGCAGTTCATCAAAGTGGTTTGGCAAATCCTCTCAAAAGCATAAATTTTAA

Coding sequence (CDS)

ATGGGAGACCAATGGCCTCAAGACTCATCTAATTTACCCTCACCCGAAGACGTTATGAACTTTTTTCAAAATGTTCTTGGAGACTATCCTTATGCTCGTGATAATGAAGTTGTTCAAGAATCATACGACAGGAGAACTTTCAACCGTGGATATCAGAACTTTGGTGGCAGTTCTCAGTATATGAATGATTTCTATCCAAGATTCGAGCACTTACAGATGAACCCAACTTATATCAGACATGACGAGGATGACAACAAGGTTGACAAAAAGGATGACAACAAGGTTGACAAAAAGGATGACAAAAATGTGAGCAAAGGATTGTCTAGAGAACTTATGTTGAAGTTGCCATCTCACGAACACAAGGGCAGTTCATCAAAGTGGTTTGGCAAATCCTCTCAAAAGCATAAATTTTAA

Protein sequence

MGDQWPQDSSNLPSPEDVMNFFQNVLGDYPYARDNEVVQESYDRRTFNRGYQNFGGSSQYMNDFYPRFEHLQMNPTYIRHDEDDNKVDKKDDNKVDKKDDKNVSKGLSRELMLKLPSHEHKGSSSKWFGKSSQKHKF
Homology
[Close]
BLAST of CmoCh15G014840 vs. ExPASy TrEMBL
Match: A0A6J1ELZ5 (LRR receptor-like serine/threonine-protein kinase GSO1 OS=Cucurbita moschata OX=3662 GN=LOC111435625 PE=4 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 6.9e-48
Identity = 99/102 (97.06%), Postives = 101/102 (99.02%), Query Frame = 0 

Query: 36  EVVQESYDRRTFNRGYQNFGGSSQYMNDFYPRFEHLQMNPTYIRHDEDDNKVDKKDDNKV 95
           EVVQESYDRRTFNRGYQNFGGSSQYMNDFYPRFEHLQMNPTYIRH+EDDNKVDKKDDNKV
Sbjct: 654 EVVQESYDRRTFNRGYQNFGGSSQYMNDFYPRFEHLQMNPTYIRHEEDDNKVDKKDDNKV 713

Query: 96  DKKDDKNVSKGLSRELMLKLPSHEHKGSSSKWFGKSSQKHKF 138
           DKKDDKNVSKGLSRELM KLPSHEHKGSSSKWFGKSSQKHK+
Sbjct: 714 DKKDDKNVSKGLSRELMSKLPSHEHKGSSSKWFGKSSQKHKY 755

[Close]
BLAST of CmoCh15G014840 vs. NCBI nr
Match: XP_022928829.1 (LRR receptor-like serine/threonine-protein kinase GSO1 [Cucurbita moschata])

HSP 1 Score: 199.9 bits (507), Expect = 1.4e-47
Identity = 99/102 (97.06%), Postives = 101/102 (99.02%), Query Frame = 0 

Query: 36  EVVQESYDRRTFNRGYQNFGGSSQYMNDFYPRFEHLQMNPTYIRHDEDDNKVDKKDDNKV 95
           EVVQESYDRRTFNRGYQNFGGSSQYMNDFYPRFEHLQMNPTYIRH+EDDNKVDKKDDNKV
Sbjct: 654 EVVQESYDRRTFNRGYQNFGGSSQYMNDFYPRFEHLQMNPTYIRHEEDDNKVDKKDDNKV 713

Query: 96  DKKDDKNVSKGLSRELMLKLPSHEHKGSSSKWFGKSSQKHKF 138
           DKKDDKNVSKGLSRELM KLPSHEHKGSSSKWFGKSSQKHK+
Sbjct: 714 DKKDDKNVSKGLSRELMSKLPSHEHKGSSSKWFGKSSQKHKY 755

[Close]
BLAST of CmoCh15G014840 vs. NCBI nr
Match: KAG6579692.1 (Receptor-like protein 12, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 167.2 bits (422), Expect = 1.0e-37
Identity = 88/98 (89.80%), Postives = 89/98 (90.82%), Query Frame = 0 

Query: 36  EVVQESYDRRTFNRGYQNFGGSSQYMNDFYPRFEHLQMNPTYIRHDE-------DDNKVD 95
           EVVQESYDRRTFNRGYQNFGGSSQYMNDFYPRFEHLQMNPTYIRHDE       DDNKVD
Sbjct: 491 EVVQESYDRRTFNRGYQNFGGSSQYMNDFYPRFEHLQMNPTYIRHDEDDEDDNKDDNKVD 550

Query: 96  KKDDNKVDKKDDKNVSKGLSRELMLKLPSHEHKGSSSK 127
           KKDDNKVDKKDDK+VSKGLS ELM KLPSHEHKGSSSK
Sbjct: 551 KKDDNKVDKKDDKSVSKGLSIELMSKLPSHEHKGSSSK 588

[Close]
BLAST of CmoCh15G014840 vs. NCBI nr
Match: KAG6605245.1 (hypothetical protein SDJN03_02562, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 129.0 bits (323), Expect = 3.1e-26
Identity = 65/95 (68.42%), Postives = 73/95 (76.84%), Query Frame = 0 

Query: 1  MGDQWPQDSSNLPSPEDVMNFFQNVLGDYPYARDN----EVVQESYDRRTFNRGYQNFGG 60
          MGDQW Q SSN+PSP +VMNFFQ+V GDYPY  DN    E V ESYD+RTFN  ++NFGG
Sbjct: 1  MGDQWLQHSSNVPSPSEVMNFFQDVFGDYPYTHDNIRSQEAVHESYDQRTFNGRFENFGG 60

Query: 61 SSQYMNDFYPRFEHLQMNPTYIRHDEDDNKVDKKD 92
          SSQY+NDFYPR EHLQ+N  YIR D DD   DKKD
Sbjct: 61 SSQYVNDFYPRIEHLQINTPYIRDDVDDEN-DKKD 94

The following BLAST results are available for this feature:
BLAST of CmoCh15G014840 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh15G014840 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1ELZ56.9e-4897.06LRR receptor-like serine/threonine-protein kinase GSO1 OS=Cucurbita moschata OX=... [more]
BLAST of CmoCh15G014840 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022928829.11.4e-4797.06LRR receptor-like serine/threonine-protein kinase GSO1 [Cucurbita moschata][more]
KAG6579692.11.0e-3789.80Receptor-like protein 12, partial [Cucurbita argyrosperma subsp. sororia][more]
KAG6605245.13.1e-2668.42hypothetical protein SDJN03_02562, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of CmoCh15G014840 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 76..125
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 76..137

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh15G014840.1CmoCh15G014840.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016310 phosphorylation
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0016301 kinase activity