CmoCh15G008040 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh15G008040
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionGRIP and coiled-coil domain-containing protein 1
LocationCmo_Chr15: 3967225 .. 3970486 (+)
RNA-Seq ExpressionCmoCh15G008040
SyntenyCmoCh15G008040
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AGAATATTCAAATCGAAATCTGAATAAAATAAACTTCTGAATTTGCTTCGAATTATCTATTGATCGTTGAAGAGAAATCGGTGTTCGTCAAAAGCGGCAGTCGTCGTCGGTGGCGATGGCTCGGGCAGGTGGTCGGAGCAGGAGTGGGAACGAACCGTCGGGGGGAGGGTTTCTTAAGGCGGTTTTCAGATTATTGAAGATGGTGGAGTTTGAGATCCTTTTCGTTCTCTTCTTCATCGTGGCTTTTATCGTTTTTAAAGATCTCGTAAGTCTCTCTGTTATTGGTCTGTTGTTATTCCTGCTCTGTCTTGAGGCATATTATCTTAATTGGATTGGATCCGCTCTGTCGTTGTTTTGTAATCTTGTTTTCAGAAATTTGGTGTATGTTAGTGTACTTTGATCCTCGAATTAGATTTGATCGAGCAGCTGATGATCTTTTCTTTTCTTTCCTCGCCGTTGTATATAGTCACTGGTTTAGAGTAAACTTATGATACGATTAAAAATTTTCGCTAATTTTTGAATGTAAAATACAGATTTGTGGAAACTTCTGTCTTTTTAGTGTACAAAATTTGGCTAGGTAGAAGGTAGAAATTATCTTTGAAAGTAGATAAAACAAGGAAGAAATTTATGCAAGTATGATTGGTAGGCAAAGGAAAAAGTTATCGTTTAGGCTCATAGATATTCCAACAAAAATTCCATTTAACAAGCCGTTTAACAAGGAGTTAAAGAAGTTAAAACAATTCCTGGATATGATTGTCCTCAACAGGCAATGGTTGATTTGACTACTGCCGTTGGCTTGTGAGCTTTGCTACTCGGACGGATGAATGTTTAGGATTGCAAGCTAAGCTTTTGAAATGGCAGAACTTGCAGTTGTTGCAAGCTCACTTTAGCCACGCTGATGGTTATAAATATTCCTGCCTATTTTCTTCTCATTGTGACTAAGAACTTGGAGAAATCTATTACAAATTTTGCACAGAAAGCTATCACTTGTGATTGTGATAGCCATCACTGCATGAGATGGAATGAGACAAATCAGTAACTCTATATATATTGTTTTCTCAAATTTTCTTTGCTGACACAAGGAAAATCACTCCAACATCAGTATTCATTTGCTTGTCAGTTTTCAAAGATTTAAACATTAGGTCATATGGTTGCTTTTGCAAGTGAATACTCATCTTTTCCTTTCTGACAAATAAATAAATAACTTTTGTACTTCATACTATGACCTTTGATTTGGAATTTGGAGTATGTATGGCGTTGTTTCATAGGAGATTTGCCCAGTTATTGCTTCCTACTCCGATTTTGATGTTGATTTTTTGGTAGTTGTGGTAGTTATGGATATGGATGCCCAATTAAGGGTATGTTCTAGTACCCTGTAGAAAAAGATGACTGGAGAGAGAGACATTTTAGAGAGAAGCGATTTATGTAACCTTGCTTGCTATCTGGTGAAAAATCTAAGCCTAAAATATGCCAAGTATTCACAATATGGAAGGAGAAGATTTGCACTAGAGGAAATAAAATACGTTTAATGAATAAGAGTGCAAGCCCTGCATTTGATCTTTTCCAACGGTAACTGAATAAAGGGAAATGGTCCAGATTTCTTTTTATAACATGGAACCCTATTTTCTAAGAAAATTCATGGGTCCAGAATGAAAGATTGCATAATTTTGAAAATATATAGGAACTTTTCTCTCTTCTTCACTGCAAGACCAGAGGATATTGCTGATGGAACATTCATGCCATTCAACAGTATTATTTCTCTCTTTCTTTCTTTCCCTTTTTTTAGAATCACTATTTCATAAGATTACTGTTGTGGGTAGCATCATTTGTTTCTTTTCGAGCTCGATTAGAAAGCGAAATGTCCTTGGAAGGAAAATTATTTATGTGATCGTACTTAAATCAGTTATCAGGATTCGGAAATTGCTTCTCACCTTAGTTCTATTCAGCTGGTATAAGTTTAGTTGTTTGTTTTCAGTTGAGAGGTGTAGTCAGTTCGAGATTGCCAGAGATACATGATATCTTGGATTTTCTTGGATAAAAATTTTAGAGAATTCTTATGTTGCTCGTTGCGTAGGCATCAACATTAAAGATTCATTTCATCGTGTATGGGTCTTGTGAGCTCATTCTCCATTTTCAATAACAATTCTCAGATAGATTCAGTGTTCTTTATTCATTTTTGTGCTGAATTTAGTTGTGAACCGTGGCATTATTTATTTATGTTTTCTCTGAAGCAGAGTAGAGTCAAAGTAGGGTCATAAATGAACGCCTATTTCAAAGCACTTTTGTAATCATTTTCTTGGTCTTATTGTTTTTTTATTGGTGCTCGTTTTAATTGTTAAGGTGTTAGAGTTTGTTTTGTGCTTTGCCTTTTTGTATGCCACTTTTGTTATCTCTTCTGAATGAAAGCATGTAAATTTATCAATTTACATCTTAAACTTTCATAAATAGGTCAATTTAGTATCTTCATTACATTTTTTTAAACAGTTAATACACAACTTTCACATTTTTTTTAAAAGATTTTAAAATGTGAGAATTAATGTAAATTAGATTGAAGCGTGCGACTCGAACGGATTGTAGCAGTTTTTTTATTTATTTGTTTTAAATTTGCGTGGTTTTCATTGTCTTCTATTTTTCTATACTTATTTAGTCTGTGGAATCTTTGGAGAATAATTTTGTTTAGGCGATTTTGAGTTTGTTTTAAATGAAATCAAGTGAAAAATAGCTATAAATCGTTAACTAACGGTATAAATTGATTCATTTATGAAAGATTAAGGTTTGAATTTATACAATTACTAGTTTAGTTTGTAGCTTTAATACTCAACTCTCAATGCATAAATTGATTTTTGTCCAAATCTTTATGTTGAAACTACTCAACAAAAATCTAGCATAACAGATCGTGAACATTCTTATTTTTCTGATTGTCTTCCTTTATTGATGTGCAAATGTTAAGAGATTCTAATCGTGTGGAATTCAATTGCAGACATCAAGGCCAGAGTACAATCAGATCCTTGTAAAGAAGCCTGAGGGTTTTGATATGTGGCCATTCCAGTAAATTCTTGACCTTGCATTCATGTAATCTGAAATATTCACTCCACTTTCTAACTTTGTGTCTTTTTATGATGATGTAAAAATGTTCGTCGATGTAGACGTTACATCTATACTGTCGTACGTTCGAAAGATTGTAAAGTAAATATTGGTTTTAGAAATGATTTGGAATTGTCAAAATAGAAAATATATCAAGGAAAAGCCGAATGTTGAAGGA

mRNA sequence

AGAATATTCAAATCGAAATCTGAATAAAATAAACTTCTGAATTTGCTTCGAATTATCTATTGATCGTTGAAGAGAAATCGGTGTTCGTCAAAAGCGGCAGTCGTCGTCGGTGGCGATGGCTCGGGCAGGTGGTCGGAGCAGGAGTGGGAACGAACCGTCGGGGGGAGGGTTTCTTAAGGCGGTTTTCAGATTATTGAAGATGGTGGAGTTTGAGATCCTTTTCGTTCTCTTCTTCATCGTGGCTTTTATCGTTTTTAAAGATCTCACATCAAGGCCAGAGTACAATCAGATCCTTGTAAAGAAGCCTGAGGGTTTTGATATGTGGCCATTCCAGTAAATTCTTGACCTTGCATTCATGTAATCTGAAATATTCACTCCACTTTCTAACTTTGTGTCTTTTTATGATGATGTAAAAATGTTCGTCGATGTAGACGTTACATCTATACTGTCGTACGTTCGAAAGATTGTAAAGTAAATATTGGTTTTAGAAATGATTTGGAATTGTCAAAATAGAAAATATATCAAGGAAAAGCCGAATGTTGAAGGA

Coding sequence (CDS)

ATGGCTCGGGCAGGTGGTCGGAGCAGGAGTGGGAACGAACCGTCGGGGGGAGGGTTTCTTAAGGCGGTTTTCAGATTATTGAAGATGGTGGAGTTTGAGATCCTTTTCGTTCTCTTCTTCATCGTGGCTTTTATCGTTTTTAAAGATCTCACATCAAGGCCAGAGTACAATCAGATCCTTGTAAAGAAGCCTGAGGGTTTTGATATGTGGCCATTCCAGTAA

Protein sequence

MARAGGRSRSGNEPSGGGFLKAVFRLLKMVEFEILFVLFFIVAFIVFKDLTSRPEYNQILVKKPEGFDMWPFQ
Homology
[Close]
BLAST of CmoCh15G008040 vs. ExPASy TrEMBL
Match: A0A6J1FE48 (uncharacterized protein LOC111444698 OS=Cucurbita moschata OX=3662 GN=LOC111444698 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 1.4e-31
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0 

Query: 1  MARAGGRSRSGNEPSGGGFLKAVFRLLKMVEFEILFVLFFIVAFIVFKDLTSRPEYNQIL 60
          MARAGGRSRSGNEPSGGGFLKAVFRLLKMVEFEILFVLFFIVAFIVFKDLTSRPEYNQIL
Sbjct: 1  MARAGGRSRSGNEPSGGGFLKAVFRLLKMVEFEILFVLFFIVAFIVFKDLTSRPEYNQIL 60

Query: 61 VKKPEGFDMWPFQ 74
          VKKPEGFDMWPFQ
Sbjct: 61 VKKPEGFDMWPFQ 73

[Close]
BLAST of CmoCh15G008040 vs. ExPASy TrEMBL
Match: A0A6J1K0Z3 (uncharacterized protein LOC111489659 OS=Cucurbita maxima OX=3661 GN=LOC111489659 PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 2.2e-29
Identity = 69/73 (94.52%), Postives = 69/73 (94.52%), Query Frame = 0 

Query: 1  MARAGGRSRSGNEPSGGGFLKAVFRLLKMVEFEILFVLFFIVAFIVFKDLTSRPEYNQIL 60
          MA AGGRSRSGNEPSGGGFLK VFR LKM EFEILFVLFFIVAFIVFKDLTSRPEYNQIL
Sbjct: 1  MALAGGRSRSGNEPSGGGFLKTVFRFLKMAEFEILFVLFFIVAFIVFKDLTSRPEYNQIL 60

Query: 61 VKKPEGFDMWPFQ 74
          VKKPEGFDMWPFQ
Sbjct: 61 VKKPEGFDMWPFQ 73

[Close]
BLAST of CmoCh15G008040 vs. ExPASy TrEMBL
Match: A0A1S3CK24 (uncharacterized protein LOC103501353 OS=Cucumis melo OX=3656 GN=LOC103501353 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 2.7e-27
Identity = 65/73 (89.04%), Postives = 68/73 (93.15%), Query Frame = 0 

Query: 1  MARAGGRSRSGNEPSGGGFLKAVFRLLKMVEFEILFVLFFIVAFIVFKDLTSRPEYNQIL 60
          MARA GRSR+G++ SGGGFLKA FR LKM EFEILFVLFFIVAFIVFKDLTSRPEYNQIL
Sbjct: 1  MARASGRSRNGSDSSGGGFLKATFRFLKMAEFEILFVLFFIVAFIVFKDLTSRPEYNQIL 60

Query: 61 VKKPEGFDMWPFQ 74
          VKKPEGFDMWPFQ
Sbjct: 61 VKKPEGFDMWPFQ 73

[Close]
BLAST of CmoCh15G008040 vs. ExPASy TrEMBL
Match: A0A0A0KPT8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G315390 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 3.0e-26
Identity = 64/73 (87.67%), Postives = 66/73 (90.41%), Query Frame = 0 

Query: 1  MARAGGRSRSGNEPSGGGFLKAVFRLLKMVEFEILFVLFFIVAFIVFKDLTSRPEYNQIL 60
          MARA GR R+G + SGGGFLKA FR LKM EFEILFVLFFIVAFIVFKDLTSRPEYNQIL
Sbjct: 1  MARATGRIRNGTDSSGGGFLKATFRFLKMAEFEILFVLFFIVAFIVFKDLTSRPEYNQIL 60

Query: 61 VKKPEGFDMWPFQ 74
          VKKPEGFDMWPFQ
Sbjct: 61 VKKPEGFDMWPFQ 73

[Close]
BLAST of CmoCh15G008040 vs. ExPASy TrEMBL
Match: A0A6J1CIZ9 (uncharacterized protein LOC111011789 OS=Momordica charantia OX=3673 GN=LOC111011789 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 7.4e-25
Identity = 60/73 (82.19%), Postives = 66/73 (90.41%), Query Frame = 0 

Query: 1  MARAGGRSRSGNEPSGGGFLKAVFRLLKMVEFEILFVLFFIVAFIVFKDLTSRPEYNQIL 60
          MAR GGRSR+GN+ +  GFLKAV R LKM EFEILF+LFF+VAFI+FKDLTSRPEYNQIL
Sbjct: 1  MARTGGRSRNGNDSAVVGFLKAVLRFLKMAEFEILFILFFVVAFILFKDLTSRPEYNQIL 60

Query: 61 VKKPEGFDMWPFQ 74
          VKKPEGFDMWPFQ
Sbjct: 61 VKKPEGFDMWPFQ 73

[Close]
BLAST of CmoCh15G008040 vs. NCBI nr
Match: XP_022938472.1 (uncharacterized protein LOC111444698 [Cucurbita moschata] >KAG7016589.1 hypothetical protein SDJN02_21699 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 144.8 bits (364), Expect = 2.9e-31
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0 

Query: 1  MARAGGRSRSGNEPSGGGFLKAVFRLLKMVEFEILFVLFFIVAFIVFKDLTSRPEYNQIL 60
          MARAGGRSRSGNEPSGGGFLKAVFRLLKMVEFEILFVLFFIVAFIVFKDLTSRPEYNQIL
Sbjct: 1  MARAGGRSRSGNEPSGGGFLKAVFRLLKMVEFEILFVLFFIVAFIVFKDLTSRPEYNQIL 60

Query: 61 VKKPEGFDMWPFQ 74
          VKKPEGFDMWPFQ
Sbjct: 61 VKKPEGFDMWPFQ 73

[Close]
BLAST of CmoCh15G008040 vs. NCBI nr
Match: KAG6579058.1 (hypothetical protein SDJN03_23506, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 143.3 bits (360), Expect = 8.4e-31
Identity = 72/73 (98.63%), Postives = 72/73 (98.63%), Query Frame = 0 

Query: 1   MARAGGRSRSGNEPSGGGFLKAVFRLLKMVEFEILFVLFFIVAFIVFKDLTSRPEYNQIL 60
           MARAGGRSRSGNEPSGGGFLKAVFRLLKM EFEILFVLFFIVAFIVFKDLTSRPEYNQIL
Sbjct: 29  MARAGGRSRSGNEPSGGGFLKAVFRLLKMAEFEILFVLFFIVAFIVFKDLTSRPEYNQIL 88

Query: 61  VKKPEGFDMWPFQ 74
           VKKPEGFDMWPFQ
Sbjct: 89  VKKPEGFDMWPFQ 101

[Close]
BLAST of CmoCh15G008040 vs. NCBI nr
Match: XP_022993749.1 (uncharacterized protein LOC111489659 [Cucurbita maxima])

HSP 1 Score: 137.5 bits (345), Expect = 4.6e-29
Identity = 69/73 (94.52%), Postives = 69/73 (94.52%), Query Frame = 0 

Query: 1  MARAGGRSRSGNEPSGGGFLKAVFRLLKMVEFEILFVLFFIVAFIVFKDLTSRPEYNQIL 60
          MA AGGRSRSGNEPSGGGFLK VFR LKM EFEILFVLFFIVAFIVFKDLTSRPEYNQIL
Sbjct: 1  MALAGGRSRSGNEPSGGGFLKTVFRFLKMAEFEILFVLFFIVAFIVFKDLTSRPEYNQIL 60

Query: 61 VKKPEGFDMWPFQ 74
          VKKPEGFDMWPFQ
Sbjct: 61 VKKPEGFDMWPFQ 73

[Close]
BLAST of CmoCh15G008040 vs. NCBI nr
Match: XP_023549700.1 (uncharacterized protein LOC111808120 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 134.4 bits (337), Expect = 3.9e-28
Identity = 69/73 (94.52%), Postives = 69/73 (94.52%), Query Frame = 0 

Query: 1  MARAGGRSRSGNEPSGGGFLKAVFRLLKMVEFEILFVLFFIVAFIVFKDLTSRPEYNQIL 60
          MARAGGRSRS NE SGGGFLKAVFR LKM EFEILFVLFFIVAFIVFKDLTSRPEYNQIL
Sbjct: 1  MARAGGRSRSVNELSGGGFLKAVFRFLKMAEFEILFVLFFIVAFIVFKDLTSRPEYNQIL 60

Query: 61 VKKPEGFDMWPFQ 74
          VKKPEGFDMWPFQ
Sbjct: 61 VKKPEGFDMWPFQ 73

[Close]
BLAST of CmoCh15G008040 vs. NCBI nr
Match: XP_008463128.1 (PREDICTED: uncharacterized protein LOC103501353 [Cucumis melo])

HSP 1 Score: 130.6 bits (327), Expect = 5.6e-27
Identity = 65/73 (89.04%), Postives = 68/73 (93.15%), Query Frame = 0 

Query: 1  MARAGGRSRSGNEPSGGGFLKAVFRLLKMVEFEILFVLFFIVAFIVFKDLTSRPEYNQIL 60
          MARA GRSR+G++ SGGGFLKA FR LKM EFEILFVLFFIVAFIVFKDLTSRPEYNQIL
Sbjct: 1  MARASGRSRNGSDSSGGGFLKATFRFLKMAEFEILFVLFFIVAFIVFKDLTSRPEYNQIL 60

Query: 61 VKKPEGFDMWPFQ 74
          VKKPEGFDMWPFQ
Sbjct: 61 VKKPEGFDMWPFQ 73

[Close]
BLAST of CmoCh15G008040 vs. TAIR 10
Match: AT3G14430.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 16 Blast hits to 16 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 77.0 bits (188), Expect = 6.9e-15
Identity = 33/54 (61.11%), Postives = 45/54 (83.33%), Query Frame = 0 

Query: 19 FLKAVFRLLKMVEFEILFVLFFIVAFIVFKDLTSRPEYNQILVKKPEGFDMWPF 73
          F+ +VF   ++ EFEILFVLF ++ +++FKDLTSRPEYN+ILV+KP G D+WPF
Sbjct: 23 FVDSVFYFFRLAEFEILFVLFMLITYVIFKDLTSRPEYNRILVEKPGGSDIWPF 76

The following BLAST results are available for this feature:
BLAST of CmoCh15G008040 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh15G008040 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1FE481.4e-31100.00uncharacterized protein LOC111444698 OS=Cucurbita moschata OX=3662 GN=LOC1114446... [more]
A0A6J1K0Z32.2e-2994.52uncharacterized protein LOC111489659 OS=Cucurbita maxima OX=3661 GN=LOC111489659... [more]
A0A1S3CK242.7e-2789.04uncharacterized protein LOC103501353 OS=Cucumis melo OX=3656 GN=LOC103501353 PE=... [more]
A0A0A0KPT83.0e-2687.67Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G315390 PE=4 SV=1[more]
A0A6J1CIZ97.4e-2582.19uncharacterized protein LOC111011789 OS=Momordica charantia OX=3673 GN=LOC111011... [more]
BLAST of CmoCh15G008040 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022938472.12.9e-31100.00uncharacterized protein LOC111444698 [Cucurbita moschata] >KAG7016589.1 hypothet... [more]
KAG6579058.18.4e-3198.63hypothetical protein SDJN03_23506, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022993749.14.6e-2994.52uncharacterized protein LOC111489659 [Cucurbita maxima][more]
XP_023549700.13.9e-2894.52uncharacterized protein LOC111808120 [Cucurbita pepo subsp. pepo][more]
XP_008463128.15.6e-2789.04PREDICTED: uncharacterized protein LOC103501353 [Cucumis melo][more]
BLAST of CmoCh15G008040 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G14430.16.9e-1561.11unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR37223OS08G0528601 PROTEINcoord: 2..72

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh15G008040.1CmoCh15G008040.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006979 response to oxidative stress
cellular_component GO:0016021 integral component of membrane