Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAAAAAGGGTGATTTTGAAAAATGGAATCTGAGTTGTTCTCGTTATTTCCACCGTTTTGATTATCAAGTGTCATTTAGTCTCCTGTCTCTACGCTCCCTGTTACTGTAATCTGTTCTTGTTCTTTCAAAAAATTTCTCATTGTCCTCTACGTTTCTTCGCTCTCGATCTGCCCCCACTTTCCCGCAATCAATCACACTTGCTTTTCAACTTTCCGACTTACGATTGAGTTCCAGATCTCTTTGTGCTCTTCATCAACTTCGAAGTTCATCAGGTACTGCCTCCTCTGCTTTACTTTTTCTAATTTGTTTCAAGGATTGGTTCGGCTTGTGTGTTGTTTTTTGGATTTGGTGTTGTTTTGGAGTAGATTTTTTGGTGATTGCTTTAACCTGCGAAGACTCCTTTTGGTTTGGGTGATCTTGATGAAATTAATTTCAGATGTGTAGTTTTGTTGATGGATTCTGCATATTTGATTGTACTTTTAAATTTATAGCTGTGTTTGCTTAATTGTTACTATATCCATGAAGGAATTGTTCAAGGCTCTTCTTCGAACTCTGTGTTGAATGTATTTTCCTGATTGAAGGATTTCCTGCAGATTCTTCGATCGTGCTTGTGTTCGTATGGAAAATCCGGAATTGAAGAATCTGAAACCATTTTGGCCTGAGGCTGACATTCAGAACAGATCTAAATGGCTATCAGTTAGTCTTGAAGGTAAGCAGTATTTATGATCGAATTTTCTGGTTCCTTGTCCAAGCCTAACGCAATAAGCCTTCGTTCTTTAGTGGTAGGAAATGTTATCAGCTCAAATCGGTTTCTACATGTGCAGAACCTTCTTCTATTACTTTTCTCGTTGTCACTAAGATTGATTTGTGTTCTATAA
mRNA sequence
ATGAGAAAAAGGTCTCCTGTCTCTACGCTCCCTGTTACTGTAATCTGTTCTTGTTCTTTCAAAAAATTTCTCATTGTCCTCTACGTTTCTTCGCTCTCGATCTGCCCCCACTTTCCCGCAATCAATCACACTTGCTTTTCAACTTTCCGACTTACGATTGAGTTCCAGATCTCTTTGTGCTCTTCATCAACTTCGAAGTTCATCAGATTCTTCGATCGTGCTTGTGTTCGTATGGAAAATCCGGAATTGAAGAATCTGAAACCATTTTGGCCTGAGGCTGACATTCAGAACAGATCTAAATGGCTATCAGTTAGTCTTGAAGTATTTATGATCGAATTTTCTGGTTCCTTGTCCAAGCCTAACGCAATAAGCCTTCGTTCTTTAGTGGTAGGAAATGTTATCAGCTCAAATCGGTTTCTACATGTGCAGAACCTTCTTCTATTACTTTTCTCGTTGTCACTAAGATTGATTTGTGTTCTATAA
Coding sequence (CDS)
ATGAGAAAAAGGTCTCCTGTCTCTACGCTCCCTGTTACTGTAATCTGTTCTTGTTCTTTCAAAAAATTTCTCATTGTCCTCTACGTTTCTTCGCTCTCGATCTGCCCCCACTTTCCCGCAATCAATCACACTTGCTTTTCAACTTTCCGACTTACGATTGAGTTCCAGATCTCTTTGTGCTCTTCATCAACTTCGAAGTTCATCAGATTCTTCGATCGTGCTTGTGTTCGTATGGAAAATCCGGAATTGAAGAATCTGAAACCATTTTGGCCTGAGGCTGACATTCAGAACAGATCTAAATGGCTATCAGTTAGTCTTGAAGTATTTATGATCGAATTTTCTGGTTCCTTGTCCAAGCCTAACGCAATAAGCCTTCGTTCTTTAGTGGTAGGAAATGTTATCAGCTCAAATCGGTTTCTACATGTGCAGAACCTTCTTCTATTACTTTTCTCGTTGTCACTAAGATTGATTTGTGTTCTATAA
Protein sequence
MRKRSPVSTLPVTVICSCSFKKFLIVLYVSSLSICPHFPAINHTCFSTFRLTIEFQISLCSSSTSKFIRFFDRACVRMENPELKNLKPFWPEADIQNRSKWLSVSLEVFMIEFSGSLSKPNAISLRSLVVGNVISSNRFLHVQNLLLLLFSLSLRLICVL
Homology
BLAST of CmoCh15G001890 vs. ExPASy TrEMBL
Match:
A0A0A0KXR2 (NAB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G645160 PE=4 SV=1)
HSP 1 Score: 80.9 bits (198), Expect = 5.4e-12
Identity = 55/100 (55.00%), Postives = 59/100 (59.00%), Query Frame = 0
Query: 17 SCSFKKFL-IVLYVSSLSICPHFPAINHTCFSTFRLTIEF-QISLCSSSTSKFIR----- 76
S SFK F LYVSSLSICPH INH+ FS F + +S STS FIR
Sbjct: 19 SYSFKNFSHCPLYVSSLSICPHSLPINHSPFSIFLSSDSSPDLSQPPPSTSNFIRKKSLE 78
Query: 77 --FFDRACVRMENPELKNLKPFWPEADIQNRSKWLSVSLE 108
F ME+PELK LKPFW EA IQNRSKWLS SLE
Sbjct: 79 QIFGSVLVFVMESPELKKLKPFWDEAGIQNRSKWLSNSLE 118
BLAST of CmoCh15G001890 vs. ExPASy TrEMBL
Match:
A0A6J1FN40 (protein NETWORKED 4A-like OS=Cucurbita moschata OX=3662 GN=LOC111445431 PE=4 SV=1)
HSP 1 Score: 67.8 bits (164), Expect = 4.7e-08
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = 0
Query: 78 MENPELKNLKPFWPEADIQNRSKWLSVSLE 108
MENPELKNLKPFWPEADIQNRSKWLSVSLE
Sbjct: 1 MENPELKNLKPFWPEADIQNRSKWLSVSLE 30
BLAST of CmoCh15G001890 vs. ExPASy TrEMBL
Match:
A0A6J1JXC2 (protein NETWORKED 4A OS=Cucurbita maxima OX=3661 GN=LOC111489163 PE=4 SV=1)
HSP 1 Score: 67.4 bits (163), Expect = 6.2e-08
Identity = 29/30 (96.67%), Postives = 30/30 (100.00%), Query Frame = 0
Query: 78 MENPELKNLKPFWPEADIQNRSKWLSVSLE 108
MENPELKNLKPFWPEADIQNRSKWLS+SLE
Sbjct: 1 MENPELKNLKPFWPEADIQNRSKWLSISLE 30
BLAST of CmoCh15G001890 vs. ExPASy TrEMBL
Match:
A0A1S3CAE2 (protein NETWORKED 4A OS=Cucumis melo OX=3656 GN=LOC103498608 PE=4 SV=1)
HSP 1 Score: 55.1 bits (131), Expect = 3.2e-04
Identity = 25/30 (83.33%), Postives = 26/30 (86.67%), Query Frame = 0
Query: 78 MENPELKNLKPFWPEADIQNRSKWLSVSLE 108
ME+PELK LKPFW EA IQNRSKWLS SLE
Sbjct: 1 MESPELKKLKPFWDEAGIQNRSKWLSNSLE 30
BLAST of CmoCh15G001890 vs. ExPASy TrEMBL
Match:
A0A6J1EC39 (protein NETWORKED 4A-like OS=Cucurbita moschata OX=3662 GN=LOC111431199 PE=4 SV=1)
HSP 1 Score: 53.9 bits (128), Expect = 7.1e-04
Identity = 24/30 (80.00%), Postives = 25/30 (83.33%), Query Frame = 0
Query: 78 MENPELKNLKPFWPEADIQNRSKWLSVSLE 108
MEN ELK LKP WPE DIQNRSKWLS +LE
Sbjct: 1 MENSELKKLKPLWPEDDIQNRSKWLSNNLE 30
BLAST of CmoCh15G001890 vs. NCBI nr
Match:
KAG7016055.1 (Protein NETWORKED 4A, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 103.2 bits (256), Expect = 2.1e-18
Identity = 48/51 (94.12%), Postives = 50/51 (98.04%), Query Frame = 0
Query: 57 ISLCSSSTSKFIRFFDRACVRMENPELKNLKPFWPEADIQNRSKWLSVSLE 108
ISLCSSSTSKFIRFFDRACVRMENPELKNLK FWPEADIQ+RSKWLS+SLE
Sbjct: 16 ISLCSSSTSKFIRFFDRACVRMENPELKNLKSFWPEADIQDRSKWLSISLE 66
BLAST of CmoCh15G001890 vs. NCBI nr
Match:
KAG6578490.1 (Protein NETWORKED 4A, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 99.4 bits (246), Expect = 3.0e-17
Identity = 49/55 (89.09%), Postives = 50/55 (90.91%), Query Frame = 0
Query: 57 ISLCSSSTSKFI----RFFDRACVRMENPELKNLKPFWPEADIQNRSKWLSVSLE 108
ISLCSSSTSKFI RFFDRACVRMENPELKNLK FWPEADIQNRSKWLS+SLE
Sbjct: 22 ISLCSSSTSKFIRLSCRFFDRACVRMENPELKNLKSFWPEADIQNRSKWLSISLE 76
BLAST of CmoCh15G001890 vs. NCBI nr
Match:
XP_023551275.1 (protein NETWORKED 4A-like [Cucurbita pepo subsp. pepo] >XP_023551276.1 protein NETWORKED 4A-like [Cucurbita pepo subsp. pepo])
HSP 1 Score: 67.8 bits (164), Expect = 9.8e-08
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = 0
Query: 78 MENPELKNLKPFWPEADIQNRSKWLSVSLE 108
MENPELKNLKPFWPEADIQNRSKWLSVSLE
Sbjct: 1 MENPELKNLKPFWPEADIQNRSKWLSVSLE 30
BLAST of CmoCh15G001890 vs. NCBI nr
Match:
XP_022939575.1 (protein NETWORKED 4A-like [Cucurbita moschata] >XP_022939576.1 protein NETWORKED 4A-like [Cucurbita moschata])
HSP 1 Score: 67.8 bits (164), Expect = 9.8e-08
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = 0
Query: 78 MENPELKNLKPFWPEADIQNRSKWLSVSLE 108
MENPELKNLKPFWPEADIQNRSKWLSVSLE
Sbjct: 1 MENPELKNLKPFWPEADIQNRSKWLSVSLE 30
BLAST of CmoCh15G001890 vs. NCBI nr
Match:
XP_022993014.1 (protein NETWORKED 4A [Cucurbita maxima] >XP_022993015.1 protein NETWORKED 4A [Cucurbita maxima])
HSP 1 Score: 67.4 bits (163), Expect = 1.3e-07
Identity = 29/30 (96.67%), Postives = 30/30 (100.00%), Query Frame = 0
Query: 78 MENPELKNLKPFWPEADIQNRSKWLSVSLE 108
MENPELKNLKPFWPEADIQNRSKWLS+SLE
Sbjct: 1 MENPELKNLKPFWPEADIQNRSKWLSISLE 30
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0KXR2 | 5.4e-12 | 55.00 | NAB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G645160 PE=4 SV... | [more] |
| A0A6J1FN40 | 4.7e-08 | 100.00 | protein NETWORKED 4A-like OS=Cucurbita moschata OX=3662 GN=LOC111445431 PE=4 SV=... | [more] |
| A0A6J1JXC2 | 6.2e-08 | 96.67 | protein NETWORKED 4A OS=Cucurbita maxima OX=3661 GN=LOC111489163 PE=4 SV=1 | [more] |
| A0A1S3CAE2 | 3.2e-04 | 83.33 | protein NETWORKED 4A OS=Cucumis melo OX=3656 GN=LOC103498608 PE=4 SV=1 | [more] |
| A0A6J1EC39 | 7.1e-04 | 80.00 | protein NETWORKED 4A-like OS=Cucurbita moschata OX=3662 GN=LOC111431199 PE=4 SV=... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| KAG7016055.1 | 2.1e-18 | 94.12 | Protein NETWORKED 4A, partial [Cucurbita argyrosperma subsp. argyrosperma] | [more] |
| KAG6578490.1 | 3.0e-17 | 89.09 | Protein NETWORKED 4A, partial [Cucurbita argyrosperma subsp. sororia] | [more] |
| XP_023551275.1 | 9.8e-08 | 100.00 | protein NETWORKED 4A-like [Cucurbita pepo subsp. pepo] >XP_023551276.1 protein N... | [more] |
| XP_022939575.1 | 9.8e-08 | 100.00 | protein NETWORKED 4A-like [Cucurbita moschata] >XP_022939576.1 protein NETWORKED... | [more] |
| XP_022993014.1 | 1.3e-07 | 96.67 | protein NETWORKED 4A [Cucurbita maxima] >XP_022993015.1 protein NETWORKED 4A [Cu... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
