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CmoCh14G017840 (gene) Cucurbita moschata (Rifu) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGCTGACGTGGAGTTTAAATATCCACCACTCTCCGCCCCATCCTCCGCTATATAAACCCCGCCGAGGTTCACCGTATGATCATCACTACCAGTTCACTGATCGACAAGCAACAACTCTCCATAGCCAGTTTCATCATACTCTGTTATCGTTCTATACCTCAGGACATAGCTTAATGGCTGCCTCAGCTGTAATGCAATCCATTCTGGCGAGTTCGGCTAGTCGAAATGCTTGTAGGACACCGGCGAATCGGCTTCTCCCGGCGGCGGTTCGGCCGTTCTCCCGGAGAGCGGCTAACTTCCGAGTGCGATGTACGGCGGAGGTACTCGCTTGGCTATTTCCGTTTTCTTGGTGACTAAATGTACTTCTATTCTGCTATTGAAGTTTCCAAGGCTACAATCGTGGAGTGATCTGTTGTATTGTTTTGATTTACAGGAGGATCAGAGAGAGCCAGCGACTCCTTCATCGGTTTCACTGCCGTCTCCACAACCAGGGCCATCTCCCACGCCATCGCCGAAGGTAATTAAACCTGCAACATCTACAAGCAGTTCTCGATTAAACGCCTGAAATGTAATAGATGGTAGGTGAATATTTATAGCCATTACATAGTTAATTTGAGATCTGGTAATCTCCGCAGATGAGTACGAAGTTAACAGACATTTTGGCGTTCAGCGGGCCAGCGCCGGAGAGGATCAACGGGCGGCTTGCGATGGTAGGGTTCGTAGCTGCCCTAGCGGTTGAAGCAGCGAAAGGACAGGACGTGTTGGAGCAGATAGGGAACGGGGGAATCCCGTGGTTTGTGGGAACAAGCGCGATTCTGACACTGGCGTCGCTGATTCCCTTTATTAGAGGAGTGAGTGTGGAGTCTAACTCGAAGGGGTTTATGACTTCCAAGGCGGAGCTGTGGAATGGGAGGTTTGCGATGTTGGGCCTTCTTGCTTTGGCCTTCACCGAGTATGTCACGGGTGGAAGCCTCGTGTAAGTTTTAGTTGGGAGCTTTTGGTTAGTTGGGAGCTTAAGTTTTAGTTGGGAGCTTTTGGCGATGTCTGAGTATTAATGCAAAATCATATCCGATCAAAGGAAATTATGTAAATATTTCTAAATAATCAATCTAAAAGTTTCAAAATTTCGG ATGCTGACGTGGAGTTTAAATATCCACCACTCTCCGCCCCATCCTCCGCTATATAAACCCCGCCGAGGTTCACCGTATGATCATCACTACCAGTTCACTGATCGACAAGCAACAACTCTCCATAGCCAGTTTCATCATACTCTGTTATCGTTCTATACCTCAGGACATAGCTTAATGGCTGCCTCAGCTGTAATGCAATCCATTCTGGCGAGTTCGGCTAGTCGAAATGCTTGTAGGACACCGGCGAATCGGCTTCTCCCGGCGGCGGTTCGGCCGTTCTCCCGGAGAGCGGCTAACTTCCGAGTGCGATGTACGGCGGAGGAGGATCAGAGAGAGCCAGCGACTCCTTCATCGGTTTCACTGCCGTCTCCACAACCAGGGCCATCTCCCACGCCATCGCCGAAGATGAGTACGAAGTTAACAGACATTTTGGCGTTCAGCGGGCCAGCGCCGGAGAGGATCAACGGGCGGCTTGCGATGGTAGGGTTCGTAGCTGCCCTAGCGGTTGAAGCAGCGAAAGGACAGGACGTGTTGGAGCAGATAGGGAACGGGGGAATCCCGTGGTTTGTGGGAACAAGCGCGATTCTGACACTGGCGTCGCTGATTCCCTTTATTAGAGGAGTGAGTGTGGAGTCTAACTCGAAGGGGTTTATGACTTCCAAGGCGGAGCTGTGGAATGGGAGGTTTGCGATGTTGGGCCTTCTTGCTTTGGCCTTCACCGAGTATGTCACGGGTGGAAGCCTCGTGTAAGTTTTAGTTGGGAGCTTTTGGTTAGTTGGGAGCTTAAGTTTTAGTTGGGAGCTTTTGGCGATGTCTGAGTATTAATGCAAAATCATATCCGATCAAAGGAAATTATGTAAATATTTCTAAATAATCAATCTAAAAGTTTCAAAATTTCGG ATGCTGACGTGGAGTTTAAATATCCACCACTCTCCGCCCCATCCTCCGCTATATAAACCCCGCCGAGGTTCACCGTATGATCATCACTACCAGTTCACTGATCGACAAGCAACAACTCTCCATAGCCAGTTTCATCATACTCTGTTATCGTTCTATACCTCAGGACATAGCTTAATGGCTGCCTCAGCTGTAATGCAATCCATTCTGGCGAGTTCGGCTAGTCGAAATGCTTGTAGGACACCGGCGAATCGGCTTCTCCCGGCGGCGGTTCGGCCGTTCTCCCGGAGAGCGGCTAACTTCCGAGTGCGATGTACGGCGGAGGAGGATCAGAGAGAGCCAGCGACTCCTTCATCGGTTTCACTGCCGTCTCCACAACCAGGGCCATCTCCCACGCCATCGCCGAAGATGAGTACGAAGTTAACAGACATTTTGGCGTTCAGCGGGCCAGCGCCGGAGAGGATCAACGGGCGGCTTGCGATGGTAGGGTTCGTAGCTGCCCTAGCGGTTGAAGCAGCGAAAGGACAGGACGTGTTGGAGCAGATAGGGAACGGGGGAATCCCGTGGTTTGTGGGAACAAGCGCGATTCTGACACTGGCGTCGCTGATTCCCTTTATTAGAGGAGTGAGTGTGGAGTCTAACTCGAAGGGGTTTATGACTTCCAAGGCGGAGCTGTGGAATGGGAGGTTTGCGATGTTGGGCCTTCTTGCTTTGGCCTTCACCGAGTATGTCACGGGTGGAAGCCTCGTGTAA MLTWSLNIHHSPPHPPLYKPRRGSPYDHHYQFTDRQATTLHSQFHHTLLSFYTSGHSLMAASAVMQSILASSASRNACRTPANRLLPAAVRPFSRRAANFRVRCTAEEDQREPATPSSVSLPSPQPGPSPTPSPKMSTKLTDILAFSGPAPERINGRLAMVGFVAALAVEAAKGQDVLEQIGNGGIPWFVGTSAILTLASLIPFIRGVSVESNSKGFMTSKAELWNGRFAMLGLLALAFTEYVTGGSLV Homology
BLAST of CmoCh14G017840 vs. ExPASy Swiss-Prot
Match: P93735 (Early light-induced protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ELIP1 PE=1 SV=1) HSP 1 Score: 197.6 bits (501), Expect = 1.7e-49 Identity = 114/197 (57.87%), Postives = 139/197 (70.56%), Query Frame = 0
BLAST of CmoCh14G017840 vs. ExPASy Swiss-Prot
Match: Q94K66 (Early light-induced protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ELIP2 PE=1 SV=1) HSP 1 Score: 189.9 bits (481), Expect = 3.5e-47 Identity = 109/198 (55.05%), Postives = 138/198 (69.70%), Query Frame = 0
BLAST of CmoCh14G017840 vs. ExPASy Swiss-Prot
Match: P11432 (Early light-induced protein, chloroplastic OS=Pisum sativum OX=3888 PE=2 SV=1) HSP 1 Score: 185.3 bits (469), Expect = 8.6e-46 Identity = 106/197 (53.81%), Postives = 141/197 (71.57%), Query Frame = 0
BLAST of CmoCh14G017840 vs. ExPASy Swiss-Prot
Match: Q01931 (Desiccation stress protein DSP-22, chloroplastic OS=Craterostigma plantagineum OX=4153 GN=DSP-22 PE=2 SV=1) HSP 1 Score: 149.8 bits (377), Expect = 4.0e-35 Identity = 84/160 (52.50%), Postives = 110/160 (68.75%), Query Frame = 0
BLAST of CmoCh14G017840 vs. ExPASy Swiss-Prot
Match: P14895 (High molecular mass early light-inducible protein HV58, chloroplastic OS=Hordeum vulgare OX=4513 PE=2 SV=1) HSP 1 Score: 144.4 bits (363), Expect = 1.7e-33 Identity = 79/152 (51.97%), Postives = 105/152 (69.08%), Query Frame = 0
BLAST of CmoCh14G017840 vs. ExPASy TrEMBL
Match: A0A6J1GV79 (early light-induced protein 1, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111457488 PE=4 SV=1) HSP 1 Score: 360.1 bits (923), Expect = 7.2e-96 Identity = 191/191 (100.00%), Postives = 191/191 (100.00%), Query Frame = 0
BLAST of CmoCh14G017840 vs. ExPASy TrEMBL
Match: A0A6J1ISC2 (early light-induced protein 1, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111480100 PE=4 SV=1) HSP 1 Score: 351.3 bits (900), Expect = 3.3e-93 Identity = 185/191 (96.86%), Postives = 189/191 (98.95%), Query Frame = 0
BLAST of CmoCh14G017840 vs. ExPASy TrEMBL
Match: A0A0A0LA49 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G145780 PE=4 SV=1) HSP 1 Score: 270.4 bits (690), Expect = 7.5e-69 Identity = 146/192 (76.04%), Postives = 161/192 (83.85%), Query Frame = 0
BLAST of CmoCh14G017840 vs. ExPASy TrEMBL
Match: A0A5D3D3B2 (Early light-induced protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G00800 PE=4 SV=1) HSP 1 Score: 259.6 bits (662), Expect = 1.3e-65 Identity = 143/192 (74.48%), Postives = 157/192 (81.77%), Query Frame = 0
BLAST of CmoCh14G017840 vs. ExPASy TrEMBL
Match: A0A1S3AXH6 (early light-induced protein 1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103483676 PE=4 SV=1) HSP 1 Score: 258.1 bits (658), Expect = 3.9e-65 Identity = 142/192 (73.96%), Postives = 156/192 (81.25%), Query Frame = 0
BLAST of CmoCh14G017840 vs. NCBI nr
Match: KAG6582332.1 (Early light-induced protein 1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 476.1 bits (1224), Expect = 1.9e-130 Identity = 246/249 (98.80%), Postives = 246/249 (98.80%), Query Frame = 0
BLAST of CmoCh14G017840 vs. NCBI nr
Match: KAG7018741.1 (Early light-induced protein 1, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 418.7 bits (1075), Expect = 3.5e-113 Identity = 220/222 (99.10%), Postives = 220/222 (99.10%), Query Frame = 0
BLAST of CmoCh14G017840 vs. NCBI nr
Match: XP_022955473.1 (early light-induced protein 1, chloroplastic-like [Cucurbita moschata] >XP_022955474.1 early light-induced protein 1, chloroplastic-like [Cucurbita moschata] >XP_022955475.1 early light-induced protein 1, chloroplastic-like [Cucurbita moschata]) HSP 1 Score: 360.1 bits (923), Expect = 1.5e-95 Identity = 191/191 (100.00%), Postives = 191/191 (100.00%), Query Frame = 0
BLAST of CmoCh14G017840 vs. NCBI nr
Match: XP_023527191.1 (early light-induced protein 1, chloroplastic-like [Cucurbita pepo subsp. pepo] >XP_023527192.1 early light-induced protein 1, chloroplastic-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 354.4 bits (908), Expect = 8.2e-94 Identity = 187/191 (97.91%), Postives = 190/191 (99.48%), Query Frame = 0
BLAST of CmoCh14G017840 vs. NCBI nr
Match: XP_022980827.1 (early light-induced protein 1, chloroplastic-like [Cucurbita maxima] >XP_022980828.1 early light-induced protein 1, chloroplastic-like [Cucurbita maxima]) HSP 1 Score: 351.3 bits (900), Expect = 6.9e-93 Identity = 185/191 (96.86%), Postives = 189/191 (98.95%), Query Frame = 0
BLAST of CmoCh14G017840 vs. TAIR 10
Match: AT3G22840.1 (Chlorophyll A-B binding family protein ) HSP 1 Score: 197.6 bits (501), Expect = 1.2e-50 Identity = 114/197 (57.87%), Postives = 139/197 (70.56%), Query Frame = 0
BLAST of CmoCh14G017840 vs. TAIR 10
Match: AT4G14690.1 (Chlorophyll A-B binding family protein ) HSP 1 Score: 189.9 bits (481), Expect = 2.5e-48 Identity = 109/198 (55.05%), Postives = 138/198 (69.70%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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