CmoCh14G017840 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh14G017840
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
Descriptionearly light-induced protein 1, chloroplastic-like
LocationCmo_Chr14: 13748492 .. 13749622 (-)
RNA-Seq ExpressionCmoCh14G017840
SyntenyCmoCh14G017840
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTGACGTGGAGTTTAAATATCCACCACTCTCCGCCCCATCCTCCGCTATATAAACCCCGCCGAGGTTCACCGTATGATCATCACTACCAGTTCACTGATCGACAAGCAACAACTCTCCATAGCCAGTTTCATCATACTCTGTTATCGTTCTATACCTCAGGACATAGCTTAATGGCTGCCTCAGCTGTAATGCAATCCATTCTGGCGAGTTCGGCTAGTCGAAATGCTTGTAGGACACCGGCGAATCGGCTTCTCCCGGCGGCGGTTCGGCCGTTCTCCCGGAGAGCGGCTAACTTCCGAGTGCGATGTACGGCGGAGGTACTCGCTTGGCTATTTCCGTTTTCTTGGTGACTAAATGTACTTCTATTCTGCTATTGAAGTTTCCAAGGCTACAATCGTGGAGTGATCTGTTGTATTGTTTTGATTTACAGGAGGATCAGAGAGAGCCAGCGACTCCTTCATCGGTTTCACTGCCGTCTCCACAACCAGGGCCATCTCCCACGCCATCGCCGAAGGTAATTAAACCTGCAACATCTACAAGCAGTTCTCGATTAAACGCCTGAAATGTAATAGATGGTAGGTGAATATTTATAGCCATTACATAGTTAATTTGAGATCTGGTAATCTCCGCAGATGAGTACGAAGTTAACAGACATTTTGGCGTTCAGCGGGCCAGCGCCGGAGAGGATCAACGGGCGGCTTGCGATGGTAGGGTTCGTAGCTGCCCTAGCGGTTGAAGCAGCGAAAGGACAGGACGTGTTGGAGCAGATAGGGAACGGGGGAATCCCGTGGTTTGTGGGAACAAGCGCGATTCTGACACTGGCGTCGCTGATTCCCTTTATTAGAGGAGTGAGTGTGGAGTCTAACTCGAAGGGGTTTATGACTTCCAAGGCGGAGCTGTGGAATGGGAGGTTTGCGATGTTGGGCCTTCTTGCTTTGGCCTTCACCGAGTATGTCACGGGTGGAAGCCTCGTGTAAGTTTTAGTTGGGAGCTTTTGGTTAGTTGGGAGCTTAAGTTTTAGTTGGGAGCTTTTGGCGATGTCTGAGTATTAATGCAAAATCATATCCGATCAAAGGAAATTATGTAAATATTTCTAAATAATCAATCTAAAAGTTTCAAAATTTCGG

mRNA sequence

ATGCTGACGTGGAGTTTAAATATCCACCACTCTCCGCCCCATCCTCCGCTATATAAACCCCGCCGAGGTTCACCGTATGATCATCACTACCAGTTCACTGATCGACAAGCAACAACTCTCCATAGCCAGTTTCATCATACTCTGTTATCGTTCTATACCTCAGGACATAGCTTAATGGCTGCCTCAGCTGTAATGCAATCCATTCTGGCGAGTTCGGCTAGTCGAAATGCTTGTAGGACACCGGCGAATCGGCTTCTCCCGGCGGCGGTTCGGCCGTTCTCCCGGAGAGCGGCTAACTTCCGAGTGCGATGTACGGCGGAGGAGGATCAGAGAGAGCCAGCGACTCCTTCATCGGTTTCACTGCCGTCTCCACAACCAGGGCCATCTCCCACGCCATCGCCGAAGATGAGTACGAAGTTAACAGACATTTTGGCGTTCAGCGGGCCAGCGCCGGAGAGGATCAACGGGCGGCTTGCGATGGTAGGGTTCGTAGCTGCCCTAGCGGTTGAAGCAGCGAAAGGACAGGACGTGTTGGAGCAGATAGGGAACGGGGGAATCCCGTGGTTTGTGGGAACAAGCGCGATTCTGACACTGGCGTCGCTGATTCCCTTTATTAGAGGAGTGAGTGTGGAGTCTAACTCGAAGGGGTTTATGACTTCCAAGGCGGAGCTGTGGAATGGGAGGTTTGCGATGTTGGGCCTTCTTGCTTTGGCCTTCACCGAGTATGTCACGGGTGGAAGCCTCGTGTAAGTTTTAGTTGGGAGCTTTTGGTTAGTTGGGAGCTTAAGTTTTAGTTGGGAGCTTTTGGCGATGTCTGAGTATTAATGCAAAATCATATCCGATCAAAGGAAATTATGTAAATATTTCTAAATAATCAATCTAAAAGTTTCAAAATTTCGG

Coding sequence (CDS)

ATGCTGACGTGGAGTTTAAATATCCACCACTCTCCGCCCCATCCTCCGCTATATAAACCCCGCCGAGGTTCACCGTATGATCATCACTACCAGTTCACTGATCGACAAGCAACAACTCTCCATAGCCAGTTTCATCATACTCTGTTATCGTTCTATACCTCAGGACATAGCTTAATGGCTGCCTCAGCTGTAATGCAATCCATTCTGGCGAGTTCGGCTAGTCGAAATGCTTGTAGGACACCGGCGAATCGGCTTCTCCCGGCGGCGGTTCGGCCGTTCTCCCGGAGAGCGGCTAACTTCCGAGTGCGATGTACGGCGGAGGAGGATCAGAGAGAGCCAGCGACTCCTTCATCGGTTTCACTGCCGTCTCCACAACCAGGGCCATCTCCCACGCCATCGCCGAAGATGAGTACGAAGTTAACAGACATTTTGGCGTTCAGCGGGCCAGCGCCGGAGAGGATCAACGGGCGGCTTGCGATGGTAGGGTTCGTAGCTGCCCTAGCGGTTGAAGCAGCGAAAGGACAGGACGTGTTGGAGCAGATAGGGAACGGGGGAATCCCGTGGTTTGTGGGAACAAGCGCGATTCTGACACTGGCGTCGCTGATTCCCTTTATTAGAGGAGTGAGTGTGGAGTCTAACTCGAAGGGGTTTATGACTTCCAAGGCGGAGCTGTGGAATGGGAGGTTTGCGATGTTGGGCCTTCTTGCTTTGGCCTTCACCGAGTATGTCACGGGTGGAAGCCTCGTGTAA

Protein sequence

MLTWSLNIHHSPPHPPLYKPRRGSPYDHHYQFTDRQATTLHSQFHHTLLSFYTSGHSLMAASAVMQSILASSASRNACRTPANRLLPAAVRPFSRRAANFRVRCTAEEDQREPATPSSVSLPSPQPGPSPTPSPKMSTKLTDILAFSGPAPERINGRLAMVGFVAALAVEAAKGQDVLEQIGNGGIPWFVGTSAILTLASLIPFIRGVSVESNSKGFMTSKAELWNGRFAMLGLLALAFTEYVTGGSLV
Homology
BLAST of CmoCh14G017840 vs. ExPASy Swiss-Prot
Match: P93735 (Early light-induced protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ELIP1 PE=1 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 1.7e-49
Identity = 114/197 (57.87%), Postives = 139/197 (70.56%), Query Frame = 0

Query: 58  LMAASAVMQSILASSASRNACRTPANRLLPAAVRPFSRRAANFRVRCTAE----EDQREP 117
           +  AS  MQS+ A   +     T  N+L  A   P  +R     VRC AE     +   P
Sbjct: 1   MATASFNMQSVFAGGLTTRKINT--NKLFSAGSFPNLKRNYPVGVRCMAEGGPTNEDSSP 60

Query: 118 ATPSSVSLPSPQ-PGPSPTPSPKMSTKLTDILAFSGPAPERINGRLAMVGFVAALAVEAA 177
           A  +S + P P+ P P P   PK+STK +D+LAFSGPAPERINGRLAMVGFVAALAVE +
Sbjct: 61  APSTSAAQPLPKSPSPPPPMKPKVSTKFSDLLAFSGPAPERINGRLAMVGFVAALAVELS 120

Query: 178 KGQDVLEQIGNGGIPWFVGTSAILTLASLIPFIRGVSVESNSKGFMTSKAELWNGRFAML 237
           KG++VL QI +GG+ WF+GT+AILTLASL+P  +G+SVES SKG MTS AELWNGRFAML
Sbjct: 121 KGENVLAQISDGGVSWFLGTTAILTLASLVPLFKGISVESKSKGIMTSDAELWNGRFAML 180

Query: 238 GLLALAFTEYVTGGSLV 250
           GL+ALAFTE+V GG+LV
Sbjct: 181 GLVALAFTEFVKGGTLV 195

BLAST of CmoCh14G017840 vs. ExPASy Swiss-Prot
Match: Q94K66 (Early light-induced protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ELIP2 PE=1 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 3.5e-47
Identity = 109/198 (55.05%), Postives = 138/198 (69.70%), Query Frame = 0

Query: 58  LMAASAVMQSILASSASRNACRTPANRLLPAAVRPFSRRAANFRVRCTAE-----EDQRE 117
           +  AS  MQS+ A+ +     R   N       + F +R A   VRC A+     ED   
Sbjct: 1   MATASFNMQSVFAAPSGVLTTRNIRN-----TNQLFFKRIAPVGVRCMAQGDPIKEDPSV 60

Query: 118 PATPSSVSLPS-PQPGPSPTPSPKMSTKLTDILAFSGPAPERINGRLAMVGFVAALAVEA 177
           P+T +S + P  PQ  P P   PK+STK  D+LAFSGPAPERINGRLAMVGFVAA+A+E 
Sbjct: 61  PSTSTSATPPQMPQSPPPPVSKPKVSTKFGDLLAFSGPAPERINGRLAMVGFVAAIAMEL 120

Query: 178 AKGQDVLEQIGNGGIPWFVGTSAILTLASLIPFIRGVSVESNSKGFMTSKAELWNGRFAM 237
           +KG++V  QI +GG+ WF+GT+A+LTLAS++P  +G+  E+ SKGFMTS AELWNGRFAM
Sbjct: 121 SKGENVFAQISDGGVGWFLGTTALLTLASMVPLFKGIRAEAKSKGFMTSDAELWNGRFAM 180

Query: 238 LGLLALAFTEYVTGGSLV 250
           LGL+ALAFTEYVTGG+LV
Sbjct: 181 LGLVALAFTEYVTGGTLV 193

BLAST of CmoCh14G017840 vs. ExPASy Swiss-Prot
Match: P11432 (Early light-induced protein, chloroplastic OS=Pisum sativum OX=3888 PE=2 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 8.6e-46
Identity = 106/197 (53.81%), Postives = 141/197 (71.57%), Query Frame = 0

Query: 59  MAASAVMQSILASSASRNACRTPANRL--LPAAVRPFSRRAANFRVRCTAEEDQREPA-- 118
           MA S+  QSI+++S +  + R+  N+   +P+   P  RR  + +VR  AE + +E +  
Sbjct: 1   MAVSS-CQSIMSNSMTNISSRSRVNQFTNIPSVYIPTLRRNVSLKVRSMAEGEPKEQSKV 60

Query: 119 --TPSSVSLPSPQPGPSPTPSPKMSTKLTDILAFSGPAPERINGRLAMVGFVAALAVEAA 178
              P++ +  +P P P+ T  PKMSTK +D++AFSGPAPERINGRLAM+GFVAA+ VE A
Sbjct: 61  AVDPTTPTASTPTPQPAYTRPPKMSTKFSDLMAFSGPAPERINGRLAMIGFVAAMGVEIA 120

Query: 179 KGQDVLEQIGNGGIPWFVGTSAILTLASLIPFIRGVSVESNSKGFMTSKAELWNGRFAML 238
           KGQ + EQ+  GG+ WF+GTS +L+LASLIPF +GVSVES SK  M+S AE WNGR AML
Sbjct: 121 KGQGLSEQLSGGGVAWFLGTSVLLSLASLIPFFQGVSVESKSKSIMSSDAEFWNGRIAML 180

Query: 239 GLLALAFTEYVTGGSLV 250
           GL+ALAFTE+V G SLV
Sbjct: 181 GLVALAFTEFVKGTSLV 196

BLAST of CmoCh14G017840 vs. ExPASy Swiss-Prot
Match: Q01931 (Desiccation stress protein DSP-22, chloroplastic OS=Craterostigma plantagineum OX=4153 GN=DSP-22 PE=2 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 4.0e-35
Identity = 84/160 (52.50%), Postives = 110/160 (68.75%), Query Frame = 0

Query: 92  PFSRRAANFRVRCTAEEDQREPATPSSVSLPSPQPGPSPTPS-PKMSTKLT-DILAFSGP 151
           P  RR A F VR   E++++E          +   GP  TP+  +++TK T D+ +F G 
Sbjct: 39  PLMRRNAKFTVRSMREDNEKEEQQQQK-QQQTHDGGPDLTPNRTEVTTKRTVDLFSFDGL 98

Query: 152 APERINGRLAMVGFVAALAVEAAKGQDVLEQIGNGGIPWFVGTSAILTLASLIPFIRGVS 211
           APERINGR AM+GFVAA+ VE A G+DV  Q+ NGG+ WF+ TSA+L LA+LIP  RG+S
Sbjct: 99  APERINGRSAMIGFVAAVGVELATGRDVFSQVFNGGVMWFLLTSAVLVLATLIPIYRGLS 158

Query: 212 VESNSKGFMTSKAELWNGRFAMLGLLALAFTEYVTGGSLV 250
            E+ + GF  S AE+WNGRFAM+GL+ALAFTEYV GG L+
Sbjct: 159 PEAKNNGFWNSDAEIWNGRFAMIGLVALAFTEYVKGGPLI 197

BLAST of CmoCh14G017840 vs. ExPASy Swiss-Prot
Match: P14895 (High molecular mass early light-inducible protein HV58, chloroplastic OS=Hordeum vulgare OX=4513 PE=2 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 1.7e-33
Identity = 79/152 (51.97%), Postives = 105/152 (69.08%), Query Frame = 0

Query: 108 EDQREPATPSSVSLPSPQPGPSPTPSP--------KMSTKLTDILAFSGPAPERINGRLA 167
           +  +E  + S+   PS    PSPT  P        K +  + D LAFSGPAPERINGRLA
Sbjct: 78  DSAKETTSASTSPSPSQYTSPSPTTIPAAPKPVTKKANPSVWDALAFSGPAPERINGRLA 137

Query: 168 MVGFVAALAVEAAKGQDVLEQIG--NGGIPWFVGTSAILTLASLIPFIRGVSVESNSKGF 227
           MVGFVAAL+VEAA+G  +L+Q+G  + G+ WF+ T+ + ++ASL+P ++G SVES S G 
Sbjct: 138 MVGFVAALSVEAARGGGLLDQVGMWSSGLAWFLATAGVFSVASLLPLLQGQSVESKSSGI 197

Query: 228 MTSKAELWNGRFAMLGLLALAFTEYVTGGSLV 250
            ++ AELWNGRFAMLGL+ALA TE++TG   V
Sbjct: 198 WSADAELWNGRFAMLGLVALAATEFITGAPFV 229

BLAST of CmoCh14G017840 vs. ExPASy TrEMBL
Match: A0A6J1GV79 (early light-induced protein 1, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111457488 PE=4 SV=1)

HSP 1 Score: 360.1 bits (923), Expect = 7.2e-96
Identity = 191/191 (100.00%), Postives = 191/191 (100.00%), Query Frame = 0

Query: 59  MAASAVMQSILASSASRNACRTPANRLLPAAVRPFSRRAANFRVRCTAEEDQREPATPSS 118
           MAASAVMQSILASSASRNACRTPANRLLPAAVRPFSRRAANFRVRCTAEEDQREPATPSS
Sbjct: 1   MAASAVMQSILASSASRNACRTPANRLLPAAVRPFSRRAANFRVRCTAEEDQREPATPSS 60

Query: 119 VSLPSPQPGPSPTPSPKMSTKLTDILAFSGPAPERINGRLAMVGFVAALAVEAAKGQDVL 178
           VSLPSPQPGPSPTPSPKMSTKLTDILAFSGPAPERINGRLAMVGFVAALAVEAAKGQDVL
Sbjct: 61  VSLPSPQPGPSPTPSPKMSTKLTDILAFSGPAPERINGRLAMVGFVAALAVEAAKGQDVL 120

Query: 179 EQIGNGGIPWFVGTSAILTLASLIPFIRGVSVESNSKGFMTSKAELWNGRFAMLGLLALA 238
           EQIGNGGIPWFVGTSAILTLASLIPFIRGVSVESNSKGFMTSKAELWNGRFAMLGLLALA
Sbjct: 121 EQIGNGGIPWFVGTSAILTLASLIPFIRGVSVESNSKGFMTSKAELWNGRFAMLGLLALA 180

Query: 239 FTEYVTGGSLV 250
           FTEYVTGGSLV
Sbjct: 181 FTEYVTGGSLV 191

BLAST of CmoCh14G017840 vs. ExPASy TrEMBL
Match: A0A6J1ISC2 (early light-induced protein 1, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111480100 PE=4 SV=1)

HSP 1 Score: 351.3 bits (900), Expect = 3.3e-93
Identity = 185/191 (96.86%), Postives = 189/191 (98.95%), Query Frame = 0

Query: 59  MAASAVMQSILASSASRNACRTPANRLLPAAVRPFSRRAANFRVRCTAEEDQREPATPSS 118
           MAASAVMQSIL SSA +NACRTPANRLLPAAV+PFSRRAANFRVRCTAEEDQREPATP+S
Sbjct: 1   MAASAVMQSILVSSARQNACRTPANRLLPAAVQPFSRRAANFRVRCTAEEDQREPATPTS 60

Query: 119 VSLPSPQPGPSPTPSPKMSTKLTDILAFSGPAPERINGRLAMVGFVAALAVEAAKGQDVL 178
           VSLPSPQPGPSPTPSPKMSTKLTDILAFSGPAPERINGRLAMVGFVAALAVEAAKGQDVL
Sbjct: 61  VSLPSPQPGPSPTPSPKMSTKLTDILAFSGPAPERINGRLAMVGFVAALAVEAAKGQDVL 120

Query: 179 EQIGNGGIPWFVGTSAILTLASLIPFIRGVSVESNSKGFMTSKAELWNGRFAMLGLLALA 238
           EQIGNGGIPWFVGTSAILTLASLIPFIRGVSVESNSKGFMTSKAELWNGRFAMLGL+ALA
Sbjct: 121 EQIGNGGIPWFVGTSAILTLASLIPFIRGVSVESNSKGFMTSKAELWNGRFAMLGLVALA 180

Query: 239 FTEYVTGGSLV 250
           FTEYVTGGSLV
Sbjct: 181 FTEYVTGGSLV 191

BLAST of CmoCh14G017840 vs. ExPASy TrEMBL
Match: A0A0A0LA49 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G145780 PE=4 SV=1)

HSP 1 Score: 270.4 bits (690), Expect = 7.5e-69
Identity = 146/192 (76.04%), Postives = 161/192 (83.85%), Query Frame = 0

Query: 59  MAASAVMQSILASSASRNACRTPANRLLPAAVRPFSRRAANFRVRCTAEEDQREPATPSS 118
           MAASAVMQSIL+++A+R   RT  NRLLPAA+RP SR  A FRVRC AEEDQRE A PSS
Sbjct: 1   MAASAVMQSILSTTATRGVYRTTTNRLLPAALRPCSRSTAAFRVRCMAEEDQREQAIPSS 60

Query: 119 VSLPSPQPGPSPTPSPKM-STKLTDILAFSGPAPERINGRLAMVGFVAALAVEAAKGQDV 178
           +    P+P PSP+P  K+ STKLTDILAFSGP PERINGRLAM+GFVAALAVE +KGQDV
Sbjct: 61  IPPSPPKPEPSPSPPSKVTSTKLTDILAFSGPGPERINGRLAMIGFVAALAVEVSKGQDV 120

Query: 179 LEQIGNGGIPWFVGTSAILTLASLIPFIRGVSVESNSKGFMTSKAELWNGRFAMLGLLAL 238
            EQI NGGIPWFVGTS +LTLASLIP  +GVS ESNSKG M+S AELWNGRFAMLGL+AL
Sbjct: 121 FEQIANGGIPWFVGTSVVLTLASLIPLFKGVSAESNSKGIMSSNAELWNGRFAMLGLVAL 180

Query: 239 AFTEYVTGGSLV 250
           AFTEYV GGSLV
Sbjct: 181 AFTEYVKGGSLV 192

BLAST of CmoCh14G017840 vs. ExPASy TrEMBL
Match: A0A5D3D3B2 (Early light-induced protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G00800 PE=4 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 1.3e-65
Identity = 143/192 (74.48%), Postives = 157/192 (81.77%), Query Frame = 0

Query: 59  MAASAVMQSILASSASRNACRTPANRLLPAAVRPFSRRAANFRVRCTAEEDQREPATPSS 118
           MAASAVMQSI +S+ASR   RT  NRLLPAAVR  SR    FRVRCTAEEDQRE A PSS
Sbjct: 1   MAASAVMQSIPSSTASRGVYRTTTNRLLPAAVRLCSRNTGAFRVRCTAEEDQREQAIPSS 60

Query: 119 VSLPSPQPGPSPTPSPKM-STKLTDILAFSGPAPERINGRLAMVGFVAALAVEAAKGQDV 178
           +    P+  P+P+ + K+ STK TDILAFSGP PERINGRLAM+GFVAALAVE +KGQDV
Sbjct: 61  IPPSPPKLEPAPSSTSKVTSTKFTDILAFSGPGPERINGRLAMIGFVAALAVEVSKGQDV 120

Query: 179 LEQIGNGGIPWFVGTSAILTLASLIPFIRGVSVESNSKGFMTSKAELWNGRFAMLGLLAL 238
            EQI NGGIPWFVGTS +LTLASLIP  +GVS ESNSKG M+S AELWNGRFAMLGL+AL
Sbjct: 121 FEQIANGGIPWFVGTSVVLTLASLIPLFKGVSAESNSKGIMSSNAELWNGRFAMLGLVAL 180

Query: 239 AFTEYVTGGSLV 250
           AFTEYV GGSLV
Sbjct: 181 AFTEYVKGGSLV 192

BLAST of CmoCh14G017840 vs. ExPASy TrEMBL
Match: A0A1S3AXH6 (early light-induced protein 1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103483676 PE=4 SV=1)

HSP 1 Score: 258.1 bits (658), Expect = 3.9e-65
Identity = 142/192 (73.96%), Postives = 156/192 (81.25%), Query Frame = 0

Query: 59  MAASAVMQSILASSASRNACRTPANRLLPAAVRPFSRRAANFRVRCTAEEDQREPATPSS 118
           MAASAVMQSI +S+ASR   RT  NRLLPAAVR  SR    FRVRCT EEDQRE A PSS
Sbjct: 1   MAASAVMQSIPSSTASRGVYRTTTNRLLPAAVRLCSRNTGAFRVRCTGEEDQREQAIPSS 60

Query: 119 VSLPSPQPGPSPTPSPKM-STKLTDILAFSGPAPERINGRLAMVGFVAALAVEAAKGQDV 178
           +    P+  P+P+ + K+ STK TDILAFSGP PERINGRLAM+GFVAALAVE +KGQDV
Sbjct: 61  IPPSPPKLEPAPSSTSKVTSTKFTDILAFSGPGPERINGRLAMIGFVAALAVEVSKGQDV 120

Query: 179 LEQIGNGGIPWFVGTSAILTLASLIPFIRGVSVESNSKGFMTSKAELWNGRFAMLGLLAL 238
            EQI NGGIPWFVGTS +LTLASLIP  +GVS ESNSKG M+S AELWNGRFAMLGL+AL
Sbjct: 121 FEQIANGGIPWFVGTSVVLTLASLIPLFKGVSAESNSKGIMSSNAELWNGRFAMLGLVAL 180

Query: 239 AFTEYVTGGSLV 250
           AFTEYV GGSLV
Sbjct: 181 AFTEYVKGGSLV 192

BLAST of CmoCh14G017840 vs. NCBI nr
Match: KAG6582332.1 (Early light-induced protein 1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 476.1 bits (1224), Expect = 1.9e-130
Identity = 246/249 (98.80%), Postives = 246/249 (98.80%), Query Frame = 0

Query: 1   MLTWSLNIHHSPPHPPLYKPRRGSPYDHHYQFTDRQATTLHSQFHHTLLSFYTSGHSLMA 60
           MLTWSLNIHHSPPHPPLYKPRR SPYDHHYQFTDRQ TTLHSQFHHTLLSFYTSGHSLMA
Sbjct: 27  MLTWSLNIHHSPPHPPLYKPRRCSPYDHHYQFTDRQTTTLHSQFHHTLLSFYTSGHSLMA 86

Query: 61  ASAVMQSILASSASRNACRTPANRLLPAAVRPFSRRAANFRVRCTAEEDQREPATPSSVS 120
           ASAVMQSILASSASRNACRTPANRLLPAAVRPFSRRAANFRVRCTAEEDQREPATP SVS
Sbjct: 87  ASAVMQSILASSASRNACRTPANRLLPAAVRPFSRRAANFRVRCTAEEDQREPATPPSVS 146

Query: 121 LPSPQPGPSPTPSPKMSTKLTDILAFSGPAPERINGRLAMVGFVAALAVEAAKGQDVLEQ 180
           LPSPQPGPSPTPSPKMSTKLTDILAFSGPAPERINGRLAMVGFVAALAVEAAKGQDVLEQ
Sbjct: 147 LPSPQPGPSPTPSPKMSTKLTDILAFSGPAPERINGRLAMVGFVAALAVEAAKGQDVLEQ 206

Query: 181 IGNGGIPWFVGTSAILTLASLIPFIRGVSVESNSKGFMTSKAELWNGRFAMLGLLALAFT 240
           IGNGGIPWFVGTSAILTLASLIPFIRGVSVESNSKGFMTSKAELWNGRFAMLGLLALAFT
Sbjct: 207 IGNGGIPWFVGTSAILTLASLIPFIRGVSVESNSKGFMTSKAELWNGRFAMLGLLALAFT 266

Query: 241 EYVTGGSLV 250
           EYVTGGSLV
Sbjct: 267 EYVTGGSLV 275

BLAST of CmoCh14G017840 vs. NCBI nr
Match: KAG7018741.1 (Early light-induced protein 1, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 418.7 bits (1075), Expect = 3.5e-113
Identity = 220/222 (99.10%), Postives = 220/222 (99.10%), Query Frame = 0

Query: 28  HHYQFTDRQATTLHSQFHHTLLSFYTSGHSLMAASAVMQSILASSASRNACRTPANRLLP 87
           HHYQFTDRQ TTLHSQFHHTLLSFYTSGHSLMAASAVMQSILASSASRNACRTPANRLLP
Sbjct: 1   HHYQFTDRQTTTLHSQFHHTLLSFYTSGHSLMAASAVMQSILASSASRNACRTPANRLLP 60

Query: 88  AAVRPFSRRAANFRVRCTAEEDQREPATPSSVSLPSPQPGPSPTPSPKMSTKLTDILAFS 147
           AAVRPFSRRAANFRVRCTAEEDQREPATP SVSLPSPQPGPSPTPSPKMSTKLTDILAFS
Sbjct: 61  AAVRPFSRRAANFRVRCTAEEDQREPATPPSVSLPSPQPGPSPTPSPKMSTKLTDILAFS 120

Query: 148 GPAPERINGRLAMVGFVAALAVEAAKGQDVLEQIGNGGIPWFVGTSAILTLASLIPFIRG 207
           GPAPERINGRLAMVGFVAALAVEAAKGQDVLEQIGNGGIPWFVGTSAILTLASLIPFIRG
Sbjct: 121 GPAPERINGRLAMVGFVAALAVEAAKGQDVLEQIGNGGIPWFVGTSAILTLASLIPFIRG 180

Query: 208 VSVESNSKGFMTSKAELWNGRFAMLGLLALAFTEYVTGGSLV 250
           VSVESNSKGFMTSKAELWNGRFAMLGLLALAFTEYVTGGSLV
Sbjct: 181 VSVESNSKGFMTSKAELWNGRFAMLGLLALAFTEYVTGGSLV 222

BLAST of CmoCh14G017840 vs. NCBI nr
Match: XP_022955473.1 (early light-induced protein 1, chloroplastic-like [Cucurbita moschata] >XP_022955474.1 early light-induced protein 1, chloroplastic-like [Cucurbita moschata] >XP_022955475.1 early light-induced protein 1, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 360.1 bits (923), Expect = 1.5e-95
Identity = 191/191 (100.00%), Postives = 191/191 (100.00%), Query Frame = 0

Query: 59  MAASAVMQSILASSASRNACRTPANRLLPAAVRPFSRRAANFRVRCTAEEDQREPATPSS 118
           MAASAVMQSILASSASRNACRTPANRLLPAAVRPFSRRAANFRVRCTAEEDQREPATPSS
Sbjct: 1   MAASAVMQSILASSASRNACRTPANRLLPAAVRPFSRRAANFRVRCTAEEDQREPATPSS 60

Query: 119 VSLPSPQPGPSPTPSPKMSTKLTDILAFSGPAPERINGRLAMVGFVAALAVEAAKGQDVL 178
           VSLPSPQPGPSPTPSPKMSTKLTDILAFSGPAPERINGRLAMVGFVAALAVEAAKGQDVL
Sbjct: 61  VSLPSPQPGPSPTPSPKMSTKLTDILAFSGPAPERINGRLAMVGFVAALAVEAAKGQDVL 120

Query: 179 EQIGNGGIPWFVGTSAILTLASLIPFIRGVSVESNSKGFMTSKAELWNGRFAMLGLLALA 238
           EQIGNGGIPWFVGTSAILTLASLIPFIRGVSVESNSKGFMTSKAELWNGRFAMLGLLALA
Sbjct: 121 EQIGNGGIPWFVGTSAILTLASLIPFIRGVSVESNSKGFMTSKAELWNGRFAMLGLLALA 180

Query: 239 FTEYVTGGSLV 250
           FTEYVTGGSLV
Sbjct: 181 FTEYVTGGSLV 191

BLAST of CmoCh14G017840 vs. NCBI nr
Match: XP_023527191.1 (early light-induced protein 1, chloroplastic-like [Cucurbita pepo subsp. pepo] >XP_023527192.1 early light-induced protein 1, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 354.4 bits (908), Expect = 8.2e-94
Identity = 187/191 (97.91%), Postives = 190/191 (99.48%), Query Frame = 0

Query: 59  MAASAVMQSILASSASRNACRTPANRLLPAAVRPFSRRAANFRVRCTAEEDQREPATPSS 118
           MAASAVMQSILASS SRNACRTPA+RLLPAAVRPFSRRAANFRVRCTAEEDQREPATP+S
Sbjct: 1   MAASAVMQSILASSVSRNACRTPASRLLPAAVRPFSRRAANFRVRCTAEEDQREPATPTS 60

Query: 119 VSLPSPQPGPSPTPSPKMSTKLTDILAFSGPAPERINGRLAMVGFVAALAVEAAKGQDVL 178
           VSLPSPQPGPSPTPSPKMSTKLTDILAFSGPAPERINGRLAMVGFVAALAVEAAKGQDVL
Sbjct: 61  VSLPSPQPGPSPTPSPKMSTKLTDILAFSGPAPERINGRLAMVGFVAALAVEAAKGQDVL 120

Query: 179 EQIGNGGIPWFVGTSAILTLASLIPFIRGVSVESNSKGFMTSKAELWNGRFAMLGLLALA 238
           EQIGNGGIPWFVGTSAILTLASLIPFIRGVSVESNSKGFMTSKAELWNGRFAMLGL+ALA
Sbjct: 121 EQIGNGGIPWFVGTSAILTLASLIPFIRGVSVESNSKGFMTSKAELWNGRFAMLGLVALA 180

Query: 239 FTEYVTGGSLV 250
           FTEYVTGGSLV
Sbjct: 181 FTEYVTGGSLV 191

BLAST of CmoCh14G017840 vs. NCBI nr
Match: XP_022980827.1 (early light-induced protein 1, chloroplastic-like [Cucurbita maxima] >XP_022980828.1 early light-induced protein 1, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 351.3 bits (900), Expect = 6.9e-93
Identity = 185/191 (96.86%), Postives = 189/191 (98.95%), Query Frame = 0

Query: 59  MAASAVMQSILASSASRNACRTPANRLLPAAVRPFSRRAANFRVRCTAEEDQREPATPSS 118
           MAASAVMQSIL SSA +NACRTPANRLLPAAV+PFSRRAANFRVRCTAEEDQREPATP+S
Sbjct: 1   MAASAVMQSILVSSARQNACRTPANRLLPAAVQPFSRRAANFRVRCTAEEDQREPATPTS 60

Query: 119 VSLPSPQPGPSPTPSPKMSTKLTDILAFSGPAPERINGRLAMVGFVAALAVEAAKGQDVL 178
           VSLPSPQPGPSPTPSPKMSTKLTDILAFSGPAPERINGRLAMVGFVAALAVEAAKGQDVL
Sbjct: 61  VSLPSPQPGPSPTPSPKMSTKLTDILAFSGPAPERINGRLAMVGFVAALAVEAAKGQDVL 120

Query: 179 EQIGNGGIPWFVGTSAILTLASLIPFIRGVSVESNSKGFMTSKAELWNGRFAMLGLLALA 238
           EQIGNGGIPWFVGTSAILTLASLIPFIRGVSVESNSKGFMTSKAELWNGRFAMLGL+ALA
Sbjct: 121 EQIGNGGIPWFVGTSAILTLASLIPFIRGVSVESNSKGFMTSKAELWNGRFAMLGLVALA 180

Query: 239 FTEYVTGGSLV 250
           FTEYVTGGSLV
Sbjct: 181 FTEYVTGGSLV 191

BLAST of CmoCh14G017840 vs. TAIR 10
Match: AT3G22840.1 (Chlorophyll A-B binding family protein )

HSP 1 Score: 197.6 bits (501), Expect = 1.2e-50
Identity = 114/197 (57.87%), Postives = 139/197 (70.56%), Query Frame = 0

Query: 58  LMAASAVMQSILASSASRNACRTPANRLLPAAVRPFSRRAANFRVRCTAE----EDQREP 117
           +  AS  MQS+ A   +     T  N+L  A   P  +R     VRC AE     +   P
Sbjct: 1   MATASFNMQSVFAGGLTTRKINT--NKLFSAGSFPNLKRNYPVGVRCMAEGGPTNEDSSP 60

Query: 118 ATPSSVSLPSPQ-PGPSPTPSPKMSTKLTDILAFSGPAPERINGRLAMVGFVAALAVEAA 177
           A  +S + P P+ P P P   PK+STK +D+LAFSGPAPERINGRLAMVGFVAALAVE +
Sbjct: 61  APSTSAAQPLPKSPSPPPPMKPKVSTKFSDLLAFSGPAPERINGRLAMVGFVAALAVELS 120

Query: 178 KGQDVLEQIGNGGIPWFVGTSAILTLASLIPFIRGVSVESNSKGFMTSKAELWNGRFAML 237
           KG++VL QI +GG+ WF+GT+AILTLASL+P  +G+SVES SKG MTS AELWNGRFAML
Sbjct: 121 KGENVLAQISDGGVSWFLGTTAILTLASLVPLFKGISVESKSKGIMTSDAELWNGRFAML 180

Query: 238 GLLALAFTEYVTGGSLV 250
           GL+ALAFTE+V GG+LV
Sbjct: 181 GLVALAFTEFVKGGTLV 195

BLAST of CmoCh14G017840 vs. TAIR 10
Match: AT4G14690.1 (Chlorophyll A-B binding family protein )

HSP 1 Score: 189.9 bits (481), Expect = 2.5e-48
Identity = 109/198 (55.05%), Postives = 138/198 (69.70%), Query Frame = 0

Query: 58  LMAASAVMQSILASSASRNACRTPANRLLPAAVRPFSRRAANFRVRCTAE-----EDQRE 117
           +  AS  MQS+ A+ +     R   N       + F +R A   VRC A+     ED   
Sbjct: 1   MATASFNMQSVFAAPSGVLTTRNIRN-----TNQLFFKRIAPVGVRCMAQGDPIKEDPSV 60

Query: 118 PATPSSVSLPS-PQPGPSPTPSPKMSTKLTDILAFSGPAPERINGRLAMVGFVAALAVEA 177
           P+T +S + P  PQ  P P   PK+STK  D+LAFSGPAPERINGRLAMVGFVAA+A+E 
Sbjct: 61  PSTSTSATPPQMPQSPPPPVSKPKVSTKFGDLLAFSGPAPERINGRLAMVGFVAAIAMEL 120

Query: 178 AKGQDVLEQIGNGGIPWFVGTSAILTLASLIPFIRGVSVESNSKGFMTSKAELWNGRFAM 237
           +KG++V  QI +GG+ WF+GT+A+LTLAS++P  +G+  E+ SKGFMTS AELWNGRFAM
Sbjct: 121 SKGENVFAQISDGGVGWFLGTTALLTLASMVPLFKGIRAEAKSKGFMTSDAELWNGRFAM 180

Query: 238 LGLLALAFTEYVTGGSLV 250
           LGL+ALAFTEYVTGG+LV
Sbjct: 181 LGLVALAFTEYVTGGTLV 193

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
P937351.7e-4957.87Early light-induced protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=... [more]
Q94K663.5e-4755.05Early light-induced protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=... [more]
P114328.6e-4653.81Early light-induced protein, chloroplastic OS=Pisum sativum OX=3888 PE=2 SV=1[more]
Q019314.0e-3552.50Desiccation stress protein DSP-22, chloroplastic OS=Craterostigma plantagineum O... [more]
P148951.7e-3351.97High molecular mass early light-inducible protein HV58, chloroplastic OS=Hordeum... [more]
Match NameE-valueIdentityDescription
A0A6J1GV797.2e-96100.00early light-induced protein 1, chloroplastic-like OS=Cucurbita moschata OX=3662 ... [more]
A0A6J1ISC23.3e-9396.86early light-induced protein 1, chloroplastic-like OS=Cucurbita maxima OX=3661 GN... [more]
A0A0A0LA497.5e-6976.04Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G145780 PE=4 SV=1[more]
A0A5D3D3B21.3e-6574.48Early light-induced protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc... [more]
A0A1S3AXH63.9e-6573.96early light-induced protein 1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC10348... [more]
Match NameE-valueIdentityDescription
KAG6582332.11.9e-13098.80Early light-induced protein 1, chloroplastic, partial [Cucurbita argyrosperma su... [more]
KAG7018741.13.5e-11399.10Early light-induced protein 1, chloroplastic, partial [Cucurbita argyrosperma su... [more]
XP_022955473.11.5e-95100.00early light-induced protein 1, chloroplastic-like [Cucurbita moschata] >XP_02295... [more]
XP_023527191.18.2e-9497.91early light-induced protein 1, chloroplastic-like [Cucurbita pepo subsp. pepo] >... [more]
XP_022980827.16.9e-9396.86early light-induced protein 1, chloroplastic-like [Cucurbita maxima] >XP_0229808... [more]
Match NameE-valueIdentityDescription
AT3G22840.11.2e-5057.87Chlorophyll A-B binding family protein [more]
AT4G14690.12.5e-4855.05Chlorophyll A-B binding family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022796Chlorophyll A-B binding proteinPFAMPF00504Chloroa_b-bindcoord: 149..241
e-value: 6.9E-9
score: 36.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 119..133
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 104..138
NoneNo IPR availablePANTHERPTHR14154UPF0041 BRAIN PROTEIN 44-RELATEDcoord: 59..239
NoneNo IPR availablePANTHERPTHR14154:SF5EARLY LIGHT-INDUCED PROTEIN 1, CHLOROPLASTICcoord: 59..239
NoneNo IPR availableSUPERFAMILY103511Chlorophyll a-b binding proteincoord: 128..246

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh14G017840.1CmoCh14G017840.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0009535 chloroplast thylakoid membrane