CmoCh14G008420 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh14G008420
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr14: 4427341 .. 4427789 (+)
RNA-Seq ExpressionCmoCh14G008420
SyntenyCmoCh14G008420
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCAAGACACAGTTACTCGAAAATTTCAAATGTTCAAATTAAACGATTTCTTGATTTAAAAAGTCTTGCTCAAATTCCAGTAGCCCGTTGATGTAGAACATACTCCAGAGTTCTTCCACTAGTCGGCTAAGAGAAGAATTTCAATCATAGGTTTCAATCTTATGGTATTATGATTCTTATTTTAGTTATTACACGTTTGAGCACGTTGATTTTTGGAGTATTTCATGCTTTGATACTCAATCATTTAAGGTACAAGGTCTTAATCCGCTATTGATGATCATACGATAAAATTGAATTCTTAGCAGTCTCGAAATAGAACATGGGGAAGAAAATGGGCACTGTCTCGGAGAGAGGCTCGATGAAATAGATATGTCTGTGAAGATGTGGACTACCTGCACGTGGACAGAAAAACCCTATGAAGCTTATAAATCCTCATATGACCAGTAA

mRNA sequence

ATGTCAAGACACAGTTACTCGAAAATTTCAAATGTTCAAATTAAACGATTTCTTGATTTAAAAAGTCTTGCTCAAATTCCAGTAGCCCTTATTACACGTTTGAGCACGTTGATTTTTGGAGTATTTCATGCTTTGATACTCAATCATTTAAGTCTCGAAATAGAACATGGGGAAGAAAATGGGCACTGTCTCGGAGAGAGGCTCGATGAAATAGATATGTCTGTGAAGATGTGGACTACCTGCACGTGGACAGAAAAACCCTATGAAGCTTATAAATCCTCATATGACCAGTAA

Coding sequence (CDS)

ATGTCAAGACACAGTTACTCGAAAATTTCAAATGTTCAAATTAAACGATTTCTTGATTTAAAAAGTCTTGCTCAAATTCCAGTAGCCCTTATTACACGTTTGAGCACGTTGATTTTTGGAGTATTTCATGCTTTGATACTCAATCATTTAAGTCTCGAAATAGAACATGGGGAAGAAAATGGGCACTGTCTCGGAGAGAGGCTCGATGAAATAGATATGTCTGTGAAGATGTGGACTACCTGCACGTGGACAGAAAAACCCTATGAAGCTTATAAATCCTCATATGACCAGTAA

Protein sequence

MSRHSYSKISNVQIKRFLDLKSLAQIPVALITRLSTLIFGVFHALILNHLSLEIEHGEENGHCLGERLDEIDMSVKMWTTCTWTEKPYEAYKSSYDQ
Homology
[Close]
BLAST of CmoCh14G008420 vs. ExPASy TrEMBL
Match: A0A5K1APN9 (Uncharacterized protein (Fragment) OS=Nymphaea colorata OX=210225 GN=NYM_LOCUS13534 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.6e-06
Identity = 26/31 (83.87%), Postives = 28/31 (90.32%), Query Frame = 0 

Query: 60 NGHCLGERLDEIDMSVKMWTTCTWTEKPYEA 91
          +GHCLGERL EIDMSVKM  TCTWTE+PYEA
Sbjct: 2  SGHCLGERLGEIDMSVKMQATCTWTERPYEA 32

[Close]
BLAST of CmoCh14G008420 vs. ExPASy TrEMBL
Match: A0A5A7TL99 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G003750 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 7.8e-06
Identity = 25/29 (86.21%), Postives = 27/29 (93.10%), Query Frame = 0 

Query: 62 HCLGERLDEIDMSVKMWTTCTWTEKPYEA 91
          HCLGERLDEIDMSVKM TTC WT++PYEA
Sbjct: 15 HCLGERLDEIDMSVKMRTTCNWTKRPYEA 43

[Close]
BLAST of CmoCh14G008420 vs. ExPASy TrEMBL
Match: V7B8W8 (Uncharacterized protein (Fragment) OS=Phaseolus vulgaris OX=3885 GN=PHAVU_008G246600g PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.3e-05
Identity = 23/31 (74.19%), Postives = 27/31 (87.10%), Query Frame = 0 

Query: 60 NGHCLGERLDEIDMSVKMWTTCTWTEKPYEA 91
          +GHCLG+R  EI+M VKMWTTCTWTE+ YEA
Sbjct: 2  SGHCLGDRFGEINMFVKMWTTCTWTERAYEA 32

[Close]
BLAST of CmoCh14G008420 vs. ExPASy TrEMBL
Match: A0A2P5CC96 (Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x14_165040 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 8.7e-05
Identity = 25/29 (86.21%), Postives = 26/29 (89.66%), Query Frame = 0 

Query: 62 HCLGERLDEIDMSVKMWTTCTWTEKPYEA 91
          H LGERL EIDMSVKM TTCTWTE+PYEA
Sbjct: 1  HYLGERLGEIDMSVKMRTTCTWTERPYEA 29

[Close]
BLAST of CmoCh14G008420 vs. ExPASy TrEMBL
Match: A0A4D6NSC2 (Uncharacterized protein family Ycf1 OS=Vigna unguiculata OX=3917 GN=DEO72_LG11g1670 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 3.3e-04
Identity = 24/28 (85.71%), Postives = 25/28 (89.29%), Query Frame = 0 

Query: 63  CLGERLDEIDMSVKMWTTCTWTEKPYEA 91
           CLGERL EIDMSVKM TTCTWT+ PYEA
Sbjct: 565 CLGERLGEIDMSVKMQTTCTWTKIPYEA 592

The following BLAST results are available for this feature:
BLAST of CmoCh14G008420 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh14G008420 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5K1APN91.6e-0683.87Uncharacterized protein (Fragment) OS=Nymphaea colorata OX=210225 GN=NYM_LOCUS13... [more]
A0A5A7TL997.8e-0686.21Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
V7B8W81.3e-0574.19Uncharacterized protein (Fragment) OS=Phaseolus vulgaris OX=3885 GN=PHAVU_008G24... [more]
A0A2P5CC968.7e-0586.21Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x1... [more]
A0A4D6NSC23.3e-0485.71Uncharacterized protein family Ycf1 OS=Vigna unguiculata OX=3917 GN=DEO72_LG11g1... [more]
BLAST of CmoCh14G008420 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh14G008420.1CmoCh14G008420.1mRNA