CmoCh13G002010 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh13G002010
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionpsbP domain-containing protein 6, chloroplastic
LocationCmo_Chr13: 1560121 .. 1562081 (+)
RNA-Seq ExpressionCmoCh13G002010
SyntenyCmoCh13G002010
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGCAAATCTCAAAACACAGACCATCTAGCATATGGTCAAAACTCAAAACTCTTATGATCTAGAGTGATCATCTACCATAGTGGTACAATTAACAAATTCACTTTCGAGTGATGAACATCAAATCACTGAATCATAGAGCAATGACAAACAATTTCTAAAACTCTCCAACAAGATAATTCTGATAGCCTACTCTATTCCAAATTCCTTTCTAGCAAGTAGATACTCGATCAACTCCAACAGCTCAAGTCCACCGCTAATAGATATTGTCTTCTTTGGGTTTTCTCTTTTGGGCTTCTCCTCAAAGTTTTAAAATACGTTTGCTATGAAGAGGTTTCCACGTACTTATAAAGAATGATTGGTTTCCCCCTCTACCCGATGGGATCTCACAAAAACGATCTAAAAACTTGAAACAAGGTGAAACAAAAGCAATCTAACCTTGACATCGAACCAAATAGGCGTTGCTTAGGACGGATACACAAAGCTTATTTTTGGTTATAACTTCTTCTTGTCACTCTCTTGTGAGTTAAATGATTTATATGCTAATGGTTATAGTTGAGATTTAGTTCTTTGCAGGAAATGTGCAACCATACCAGTTCCTTCTGCCTCCAACTTGGAAACAAGTGCGTGTAGCTAACATTTTATCTGGTAATTACTGTCAACCCAAGTGTGCAGAGCCTTGGGTGGAGGTGAAATTTGAAGATGACAAGTAAGGCAAAATCCAGGTAGTGGCTTCCCCTTTGGTACGTCTCACTAATAAACCCAATGCCACGATTGAAGACATAGGTAGCCCTGACAAGGTTATTCTTGGCCCTTTTGTTACTGGGAATACATTCGATCCCGAAGAACTCGTTGAATCATCAGTTGAGAAACTCGGTGATCATACGGTATAATCCTCCTCTGTCTGGTAGATTATATTTTTGTTATAATCGTTCTTTAAGCACAATAATACTATGTGAGATCCCACATCGGTCAGAGAGGGGAACAAAGTTTTCCTTATAAGGGTGTGGAACCTCTCCCTAGTACACGCGTTAGGCTGACAACAATACGTAACTGGTCAAAGTGGACAATATCTGCTAGCAGTGGATTTAACCTGTTACATGCTATAAAAATAACTTAGAGATATGAGATTTGCTTATCCTCGTTCCGGTAAATTTCTTTTTAAGAAACTTATAATGTAGTCGTATATTCAATTTAGACTATTCTTTATAAAGCTGATTATTATACCCAGAGATCGATAAGTATTGTTAGGAACCACAACTCTCCACAGTGGTATGATATTGTCCACTTTGAGCATAAACTCTGATGGCTTTGCGTTTAGTTTCCCCAAAGGGCCTCATATCAATCTAGATGTATTCTTTACTTATAAACCCATGATCAACTACTTAATTAGCCGATGTGAGACTTCCTTTCAACAATCCTCAAGAATATATCATTTGTAACGAGATGACAAGTTTGAAGTCTCGTTTTTCTTACGTCCTGGTGACCTTCCTCTAGGCCTCCTTGGTTGAGATGATAAAGTCTGATGAAACACGTCGACTAGCAGGTTGCACTTCACTAATTAAGGCAGTCTCTAGTTTCTTCTTGGATCTGTACTTTAATTCCTTTTTCTCCTAACTTATTAGTTTCTTCACTTTCTTCCTGCCAACGCCAATGGATACTTTTGTAGTTATTATGTACAAGTTGATTTTTGTGTTTGTTTGTGTCCGGAGAATTCGAACCTTTAACTATTTGGTCGAGTGTATATACTTAACCAATTTGAATAGAGCAACCTTAAAAACTTTATGTTTTTTTACAAATACACACCGGAGACTCTTTATGCACCGACGGGTACACACAATCTAGCCAAGGCAACGGCTAAAGGAAGCACGGTTGTGTTATTTGTGGCTAGTGCCAATGATAAACAATGGCAGACATCTCAGAAAGTTTTGAGAACCATGCTTGATTCTTTTCAGCTCTAG

mRNA sequence

ATGAGCAAATCTCAAAACACAGACCATCTAGCATATGGAAATGTGCAACCATACCAGTTCCTTCTGCCTCCAACTTGGAAACAAGTGCGTGTAGCTAACATTTTATCTGGTAATTACTGTCAACCCAAGTGTGCAGAGCCTTGGGTGGAGGTAGTGGCTTCCCCTTTGGTACGTCTCACTAATAAACCCAATGCCACGATTGAAGACATAGGTAGCCCTGACAAGGTTATTCTTGGCCCTTTTGTTACTGGGAATACATTCGATCCCGAAGAACTCGTTGAATCATCAGTTGAGAAACTCGGTGATCATACGGCAACGGCTAAAGGAAGCACGGTTGTGTTATTTGTGGCTAGTGCCAATGATAAACAATGGCAGACATCTCAGAAAGTTTTGAGAACCATGCTTGATTCTTTTCAGCTCTAG

Coding sequence (CDS)

ATGAGCAAATCTCAAAACACAGACCATCTAGCATATGGAAATGTGCAACCATACCAGTTCCTTCTGCCTCCAACTTGGAAACAAGTGCGTGTAGCTAACATTTTATCTGGTAATTACTGTCAACCCAAGTGTGCAGAGCCTTGGGTGGAGGTAGTGGCTTCCCCTTTGGTACGTCTCACTAATAAACCCAATGCCACGATTGAAGACATAGGTAGCCCTGACAAGGTTATTCTTGGCCCTTTTGTTACTGGGAATACATTCGATCCCGAAGAACTCGTTGAATCATCAGTTGAGAAACTCGGTGATCATACGGCAACGGCTAAAGGAAGCACGGTTGTGTTATTTGTGGCTAGTGCCAATGATAAACAATGGCAGACATCTCAGAAAGTTTTGAGAACCATGCTTGATTCTTTTCAGCTCTAG

Protein sequence

MSKSQNTDHLAYGNVQPYQFLLPPTWKQVRVANILSGNYCQPKCAEPWVEVVASPLVRLTNKPNATIEDIGSPDKVILGPFVTGNTFDPEELVESSVEKLGDHTATAKGSTVVLFVASANDKQWQTSQKVLRTMLDSFQL
Homology
BLAST of CmoCh13G002010 vs. ExPASy Swiss-Prot
Match: Q9LXX5 (PsbP domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PPD6 PE=1 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 1.0e-51
Identity = 104/173 (60.12%), Postives = 124/173 (71.68%), Query Frame = 0

Query: 2   SKSQNTDHLAYGNVQPYQFLLPPTWKQVRVANILSGNYCQPKCAEPWVE----------- 61
           +K  +T  L  GNVQPYQF+LPP WKQ+R+ANILSGNYCQPKCAEPW+E           
Sbjct: 90  AKPSDTPALRAGNVQPYQFVLPPNWKQLRIANILSGNYCQPKCAEPWIEVKFENEKQGKV 149

Query: 62  -VVASPLVRLTNKPNATIEDIGSPDKVI--LGPFVTGNTFDPEELVESSVEKLGDHT--- 121
            VVASPL+RLTNKPNATIED+G P+KVI  LGPFVTGN++D +EL+++S+EK+GD T   
Sbjct: 150 QVVASPLIRLTNKPNATIEDLGEPEKVIASLGPFVTGNSYDSDELLKTSIEKIGDQTYYK 209

Query: 122 -----------------ATAKGSTVVLFVASANDKQWQTSQKVLRTMLDSFQL 141
                            ATAKGSTVVLFV SA +KQWQ+SQK L  +LDSFQL
Sbjct: 210 YVLETPFALTGSHNLAKATAKGSTVVLFVVSATEKQWQSSQKTLEAILDSFQL 262

BLAST of CmoCh13G002010 vs. ExPASy TrEMBL
Match: A0A6J1KBG9 (psbP domain-containing protein 6, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111493415 PE=4 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 2.4e-56
Identity = 121/170 (71.18%), Postives = 129/170 (75.88%), Query Frame = 0

Query: 5   QNTDHLAYGNVQPYQFLLPPTWKQVRVANILSGNYCQPKCAEPWVE------------VV 64
           ++T  L  GNVQPYQF+LPPTWKQ RVANILSGNYCQPKCAEPWVE            VV
Sbjct: 91  RDTPALRAGNVQPYQFILPPTWKQTRVANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVV 150

Query: 65  ASPLVRLTNKPNATIEDIGSPDKVI--LGPFVTGNTFDPEELVESSVEKLGDHT------ 124
           ASPL+RLTNKPNATIEDIGSP+KVI  LGPFVTGNT+DPEEL+ESSVEKLGD T      
Sbjct: 151 ASPLIRLTNKPNATIEDIGSPEKVIASLGPFVTGNTYDPEELLESSVEKLGDQTYYKYTL 210

Query: 125 --------------ATAKGSTVVLFVASANDKQWQTSQKVLRTMLDSFQL 141
                         ATAKGSTVVLFVASANDKQWQ S+KVLRTMLDSFQL
Sbjct: 211 ETPYALTGTHNLAKATAKGSTVVLFVASANDKQWQASEKVLRTMLDSFQL 260

BLAST of CmoCh13G002010 vs. ExPASy TrEMBL
Match: A0A6J1G9G7 (psbP domain-containing protein 6, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111452175 PE=4 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 2.4e-56
Identity = 121/170 (71.18%), Postives = 129/170 (75.88%), Query Frame = 0

Query: 5   QNTDHLAYGNVQPYQFLLPPTWKQVRVANILSGNYCQPKCAEPWVE------------VV 64
           ++T  L  GNVQPYQF+LPPTWKQ RVANILSGNYCQPKCAEPWVE            VV
Sbjct: 95  RDTPALRAGNVQPYQFILPPTWKQTRVANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVV 154

Query: 65  ASPLVRLTNKPNATIEDIGSPDKVI--LGPFVTGNTFDPEELVESSVEKLGDHT------ 124
           ASPL+RLTNKPNATIEDIGSP+KVI  LGPFVTGNT+DPEEL+ESSVEKLGD T      
Sbjct: 155 ASPLIRLTNKPNATIEDIGSPEKVIASLGPFVTGNTYDPEELLESSVEKLGDQTYYKYTL 214

Query: 125 --------------ATAKGSTVVLFVASANDKQWQTSQKVLRTMLDSFQL 141
                         ATAKGSTVVLFVASANDKQWQ S+KVLRTMLDSFQL
Sbjct: 215 ETPYALTGTHNLAKATAKGSTVVLFVASANDKQWQASEKVLRTMLDSFQL 264

BLAST of CmoCh13G002010 vs. ExPASy TrEMBL
Match: A0A0A0LVB3 (PsbP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G088470 PE=4 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 3.5e-55
Identity = 119/173 (68.79%), Postives = 128/173 (73.99%), Query Frame = 0

Query: 2   SKSQNTDHLAYGNVQPYQFLLPPTWKQVRVANILSGNYCQPKCAEPWVEV---------- 61
           +   +T  L  GNVQPYQF+LPPTWKQ RVANILSGNYCQPKCAEPWVEV          
Sbjct: 91  ASQSDTPALRAGNVQPYQFILPPTWKQTRVANILSGNYCQPKCAEPWVEVKFEDDKQGKI 150

Query: 62  --VASPLVRLTNKPNATIEDIGSPDKVI--LGPFVTGNTFDPEELVESSVEKLGDHT--- 121
             VASPL+RLTNKPNATIEDIGSP+KVI  LGPFVTG+T+DPEEL+ESSVEKLGD T   
Sbjct: 151 QIVASPLIRLTNKPNATIEDIGSPEKVIASLGPFVTGSTYDPEELLESSVEKLGDQTYYK 210

Query: 122 -----------------ATAKGSTVVLFVASANDKQWQTSQKVLRTMLDSFQL 141
                            ATAKGSTVVLFVASANDKQWQ S+KVLRTMLDSF L
Sbjct: 211 YTLETPYALTGTHNLAKATAKGSTVVLFVASANDKQWQASEKVLRTMLDSFHL 263

BLAST of CmoCh13G002010 vs. ExPASy TrEMBL
Match: A0A5A7U7M4 (PsbP domain-containing protein 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold769G00470 PE=4 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 7.7e-55
Identity = 118/169 (69.82%), Postives = 128/169 (75.74%), Query Frame = 0

Query: 6   NTDHLAYGNVQPYQFLLPPTWKQVRVANILSGNYCQPKCAEPWVE------------VVA 65
           +T  L  GNVQPYQF+LPPTWKQ RVANILSGNYCQPKCAEPWVE            VVA
Sbjct: 95  DTPALRAGNVQPYQFILPPTWKQTRVANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVA 154

Query: 66  SPLVRLTNKPNATIEDIGSPDKVI--LGPFVTGNTFDPEELVESSVEKLGDHT------- 125
           SPL+RLTNKPNATIEDIGSP+KVI  LGPFVTG+T+DP+EL+ESSVEKLGD T       
Sbjct: 155 SPLIRLTNKPNATIEDIGSPEKVIASLGPFVTGSTYDPDELLESSVEKLGDQTYYKYTLE 214

Query: 126 -------------ATAKGSTVVLFVASANDKQWQTSQKVLRTMLDSFQL 141
                        ATAKGSTVVLFVASANDKQWQ S+KVLRTMLDSF+L
Sbjct: 215 TPYALTGTHNLAKATAKGSTVVLFVASANDKQWQASEKVLRTMLDSFRL 263

BLAST of CmoCh13G002010 vs. ExPASy TrEMBL
Match: A0A1S3CJG7 (psbP domain-containing protein 6, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103501655 PE=4 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 7.7e-55
Identity = 118/169 (69.82%), Postives = 128/169 (75.74%), Query Frame = 0

Query: 6   NTDHLAYGNVQPYQFLLPPTWKQVRVANILSGNYCQPKCAEPWVE------------VVA 65
           +T  L  GNVQPYQF+LPPTWKQ RVANILSGNYCQPKCAEPWVE            VVA
Sbjct: 95  DTPALRAGNVQPYQFILPPTWKQTRVANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVA 154

Query: 66  SPLVRLTNKPNATIEDIGSPDKVI--LGPFVTGNTFDPEELVESSVEKLGDHT------- 125
           SPL+RLTNKPNATIEDIGSP+KVI  LGPFVTG+T+DP+EL+ESSVEKLGD T       
Sbjct: 155 SPLIRLTNKPNATIEDIGSPEKVIASLGPFVTGSTYDPDELLESSVEKLGDQTYYKYTLE 214

Query: 126 -------------ATAKGSTVVLFVASANDKQWQTSQKVLRTMLDSFQL 141
                        ATAKGSTVVLFVASANDKQWQ S+KVLRTMLDSF+L
Sbjct: 215 TPYALTGTHNLAKATAKGSTVVLFVASANDKQWQASEKVLRTMLDSFRL 263

BLAST of CmoCh13G002010 vs. NCBI nr
Match: XP_023524584.1 (psbP domain-containing protein 6, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 228.0 bits (580), Expect = 5.0e-56
Identity = 121/170 (71.18%), Postives = 129/170 (75.88%), Query Frame = 0

Query: 5   QNTDHLAYGNVQPYQFLLPPTWKQVRVANILSGNYCQPKCAEPWVE------------VV 64
           ++T  L  GNVQPYQF+LPPTWKQ RVANILSGNYCQPKCAEPWVE            VV
Sbjct: 60  RDTPALRAGNVQPYQFILPPTWKQTRVANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVV 119

Query: 65  ASPLVRLTNKPNATIEDIGSPDKVI--LGPFVTGNTFDPEELVESSVEKLGDHT------ 124
           ASPL+RLTNKPNATIEDIGSP+KVI  LGPFVTGNT+DPEEL+ESSVEKLGD T      
Sbjct: 120 ASPLIRLTNKPNATIEDIGSPEKVIASLGPFVTGNTYDPEELLESSVEKLGDQTYYKYTL 179

Query: 125 --------------ATAKGSTVVLFVASANDKQWQTSQKVLRTMLDSFQL 141
                         ATAKGSTVVLFVASANDKQWQ S+KVLRTMLDSFQL
Sbjct: 180 ETPYALTGTHNLAKATAKGSTVVLFVASANDKQWQASEKVLRTMLDSFQL 229

BLAST of CmoCh13G002010 vs. NCBI nr
Match: XP_022998891.1 (psbP domain-containing protein 6, chloroplastic [Cucurbita maxima])

HSP 1 Score: 228.0 bits (580), Expect = 5.0e-56
Identity = 121/170 (71.18%), Postives = 129/170 (75.88%), Query Frame = 0

Query: 5   QNTDHLAYGNVQPYQFLLPPTWKQVRVANILSGNYCQPKCAEPWVE------------VV 64
           ++T  L  GNVQPYQF+LPPTWKQ RVANILSGNYCQPKCAEPWVE            VV
Sbjct: 91  RDTPALRAGNVQPYQFILPPTWKQTRVANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVV 150

Query: 65  ASPLVRLTNKPNATIEDIGSPDKVI--LGPFVTGNTFDPEELVESSVEKLGDHT------ 124
           ASPL+RLTNKPNATIEDIGSP+KVI  LGPFVTGNT+DPEEL+ESSVEKLGD T      
Sbjct: 151 ASPLIRLTNKPNATIEDIGSPEKVIASLGPFVTGNTYDPEELLESSVEKLGDQTYYKYTL 210

Query: 125 --------------ATAKGSTVVLFVASANDKQWQTSQKVLRTMLDSFQL 141
                         ATAKGSTVVLFVASANDKQWQ S+KVLRTMLDSFQL
Sbjct: 211 ETPYALTGTHNLAKATAKGSTVVLFVASANDKQWQASEKVLRTMLDSFQL 260

BLAST of CmoCh13G002010 vs. NCBI nr
Match: XP_022948517.1 (psbP domain-containing protein 6, chloroplastic [Cucurbita moschata] >KAG6607176.1 PsbP domain-containing protein 6, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 228.0 bits (580), Expect = 5.0e-56
Identity = 121/170 (71.18%), Postives = 129/170 (75.88%), Query Frame = 0

Query: 5   QNTDHLAYGNVQPYQFLLPPTWKQVRVANILSGNYCQPKCAEPWVE------------VV 64
           ++T  L  GNVQPYQF+LPPTWKQ RVANILSGNYCQPKCAEPWVE            VV
Sbjct: 95  RDTPALRAGNVQPYQFILPPTWKQTRVANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVV 154

Query: 65  ASPLVRLTNKPNATIEDIGSPDKVI--LGPFVTGNTFDPEELVESSVEKLGDHT------ 124
           ASPL+RLTNKPNATIEDIGSP+KVI  LGPFVTGNT+DPEEL+ESSVEKLGD T      
Sbjct: 155 ASPLIRLTNKPNATIEDIGSPEKVIASLGPFVTGNTYDPEELLESSVEKLGDQTYYKYTL 214

Query: 125 --------------ATAKGSTVVLFVASANDKQWQTSQKVLRTMLDSFQL 141
                         ATAKGSTVVLFVASANDKQWQ S+KVLRTMLDSFQL
Sbjct: 215 ETPYALTGTHNLAKATAKGSTVVLFVASANDKQWQASEKVLRTMLDSFQL 264

BLAST of CmoCh13G002010 vs. NCBI nr
Match: XP_023521520.1 (psbP domain-containing protein 6, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 228.0 bits (580), Expect = 5.0e-56
Identity = 121/170 (71.18%), Postives = 129/170 (75.88%), Query Frame = 0

Query: 5   QNTDHLAYGNVQPYQFLLPPTWKQVRVANILSGNYCQPKCAEPWVE------------VV 64
           ++T  L  GNVQPYQF+LPPTWKQ RVANILSGNYCQPKCAEPWVE            VV
Sbjct: 95  RDTPALRAGNVQPYQFILPPTWKQTRVANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVV 154

Query: 65  ASPLVRLTNKPNATIEDIGSPDKVI--LGPFVTGNTFDPEELVESSVEKLGDHT------ 124
           ASPL+RLTNKPNATIEDIGSP+KVI  LGPFVTGNT+DPEEL+ESSVEKLGD T      
Sbjct: 155 ASPLIRLTNKPNATIEDIGSPEKVIASLGPFVTGNTYDPEELLESSVEKLGDQTYYKYTL 214

Query: 125 --------------ATAKGSTVVLFVASANDKQWQTSQKVLRTMLDSFQL 141
                         ATAKGSTVVLFVASANDKQWQ S+KVLRTMLDSFQL
Sbjct: 215 ETPYALTGTHNLAKATAKGSTVVLFVASANDKQWQASEKVLRTMLDSFQL 264

BLAST of CmoCh13G002010 vs. NCBI nr
Match: XP_038895408.1 (psbP domain-containing protein 6, chloroplastic [Benincasa hispida])

HSP 1 Score: 226.1 bits (575), Expect = 1.9e-55
Identity = 120/169 (71.01%), Postives = 129/169 (76.33%), Query Frame = 0

Query: 6   NTDHLAYGNVQPYQFLLPPTWKQVRVANILSGNYCQPKCAEPWVE------------VVA 65
           +T  L  GNVQPYQF+LPPTWKQ RVANILSGNYCQPKCAEPWVE            VVA
Sbjct: 129 DTPALRAGNVQPYQFILPPTWKQTRVANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVA 188

Query: 66  SPLVRLTNKPNATIEDIGSPDKVI--LGPFVTGNTFDPEELVESSVEKLGDHT------- 125
           SPL+RLTNKPNATIEDIGSP+KVI  LGPFVTG+T+DPEEL+ESSVEKLGD T       
Sbjct: 189 SPLIRLTNKPNATIEDIGSPEKVIASLGPFVTGSTYDPEELLESSVEKLGDQTYYKYTLE 248

Query: 126 -------------ATAKGSTVVLFVASANDKQWQTSQKVLRTMLDSFQL 141
                        ATAKGSTVVLFVASANDKQWQ+S+KVLRTMLDSFQL
Sbjct: 249 TPYALTGTHNLAKATAKGSTVVLFVASANDKQWQSSEKVLRTMLDSFQL 297

BLAST of CmoCh13G002010 vs. TAIR 10
Match: AT3G56650.1 (Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein )

HSP 1 Score: 204.1 bits (518), Expect = 7.1e-53
Identity = 104/173 (60.12%), Postives = 124/173 (71.68%), Query Frame = 0

Query: 2   SKSQNTDHLAYGNVQPYQFLLPPTWKQVRVANILSGNYCQPKCAEPWVE----------- 61
           +K  +T  L  GNVQPYQF+LPP WKQ+R+ANILSGNYCQPKCAEPW+E           
Sbjct: 90  AKPSDTPALRAGNVQPYQFVLPPNWKQLRIANILSGNYCQPKCAEPWIEVKFENEKQGKV 149

Query: 62  -VVASPLVRLTNKPNATIEDIGSPDKVI--LGPFVTGNTFDPEELVESSVEKLGDHT--- 121
            VVASPL+RLTNKPNATIED+G P+KVI  LGPFVTGN++D +EL+++S+EK+GD T   
Sbjct: 150 QVVASPLIRLTNKPNATIEDLGEPEKVIASLGPFVTGNSYDSDELLKTSIEKIGDQTYYK 209

Query: 122 -----------------ATAKGSTVVLFVASANDKQWQTSQKVLRTMLDSFQL 141
                            ATAKGSTVVLFV SA +KQWQ+SQK L  +LDSFQL
Sbjct: 210 YVLETPFALTGSHNLAKATAKGSTVVLFVVSATEKQWQSSQKTLEAILDSFQL 262

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q9LXX51.0e-5160.12PsbP domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702 ... [more]
Match NameE-valueIdentityDescription
A0A6J1KBG92.4e-5671.18psbP domain-containing protein 6, chloroplastic OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A6J1G9G72.4e-5671.18psbP domain-containing protein 6, chloroplastic OS=Cucurbita moschata OX=3662 GN... [more]
A0A0A0LVB33.5e-5568.79PsbP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G088470 PE=4 S... [more]
A0A5A7U7M47.7e-5569.82PsbP domain-containing protein 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676... [more]
A0A1S3CJG77.7e-5569.82psbP domain-containing protein 6, chloroplastic OS=Cucumis melo OX=3656 GN=LOC10... [more]
Match NameE-valueIdentityDescription
XP_023524584.15.0e-5671.18psbP domain-containing protein 6, chloroplastic-like [Cucurbita pepo subsp. pepo... [more]
XP_022998891.15.0e-5671.18psbP domain-containing protein 6, chloroplastic [Cucurbita maxima][more]
XP_022948517.15.0e-5671.18psbP domain-containing protein 6, chloroplastic [Cucurbita moschata] >KAG6607176... [more]
XP_023521520.15.0e-5671.18psbP domain-containing protein 6, chloroplastic-like [Cucurbita pepo subsp. pepo... [more]
XP_038895408.11.9e-5571.01psbP domain-containing protein 6, chloroplastic [Benincasa hispida][more]
Match NameE-valueIdentityDescription
AT3G56650.17.1e-5360.12Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.1000.10Mog1/PsbP, alpha/beta/alpha sandwichcoord: 1..103
e-value: 6.2E-8
score: 34.6
coord: 104..140
e-value: 3.2E-6
score: 29.0
NoneNo IPR availablePANTHERPTHR31407FAMILY NOT NAMEDcoord: 4..104
coord: 104..139
NoneNo IPR availablePANTHERPTHR31407:SF18PSBP DOMAIN-CONTAINING PROTEIN 6, CHLOROPLASTICcoord: 4..104
coord: 104..139
IPR016123Mog1/PsbP, alpha/beta/alpha sandwichSUPERFAMILY55724Mog1p/PsbP-likecoord: 12..139

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh13G002010.1CmoCh13G002010.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0009523 photosystem II