CmoCh13G002010 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh13G002010
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	psbP domain-containing protein 6, chloroplastic
Location	Cmo_Chr13: 1560121 .. 1562081 (+)
RNA-Seq Expression	CmoCh13G002010
Synteny	CmoCh13G002010

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCAAATCTCAAAACACAGACCATCTAGCATATGGTCAAAACTCAAAACTCTTATGATCTAGAGTGATCATCTACCATAGTGGTACAATTAACAAATTCACTTTCGAGTGATGAACATCAAATCACTGAATCATAGAGCAATGACAAACAATTTCTAAAACTCTCCAACAAGATAATTCTGATAGCCTACTCTATTCCAAATTCCTTTCTAGCAAGTAGATACTCGATCAACTCCAACAGCTCAAGTCCACCGCTAATAGATATTGTCTTCTTTGGGTTTTCTCTTTTGGGCTTCTCCTCAAAGTTTTAAAATACGTTTGCTATGAAGAGGTTTCCACGTACTTATAAAGAATGATTGGTTTCCCCCTCTACCCGATGGGATCTCACAAAAACGATCTAAAAACTTGAAACAAGGTGAAACAAAAGCAATCTAACCTTGACATCGAACCAAATAGGCGTTGCTTAGGACGGATACACAAAGCTTATTTTTGGTTATAACTTCTTCTTGTCACTCTCTTGTGAGTTAAATGATTTATATGCTAATGGTTATAGTTGAGATTTAGTTCTTTGCAGGAAATGTGCAACCATACCAGTTCCTTCTGCCTCCAACTTGGAAACAAGTGCGTGTAGCTAACATTTTATCTGGTAATTACTGTCAACCCAAGTGTGCAGAGCCTTGGGTGGAGGTGAAATTTGAAGATGACAAGTAAGGCAAAATCCAGGTAGTGGCTTCCCCTTTGGTACGTCTCACTAATAAACCCAATGCCACGATTGAAGACATAGGTAGCCCTGACAAGGTTATTCTTGGCCCTTTTGTTACTGGGAATACATTCGATCCCGAAGAACTCGTTGAATCATCAGTTGAGAAACTCGGTGATCATACGGTATAATCCTCCTCTGTCTGGTAGATTATATTTTTGTTATAATCGTTCTTTAAGCACAATAATACTATGTGAGATCCCACATCGGTCAGAGAGGGGAACAAAGTTTTCCTTATAAGGGTGTGGAACCTCTCCCTAGTACACGCGTTAGGCTGACAACAATACGTAACTGGTCAAAGTGGACAATATCTGCTAGCAGTGGATTTAACCTGTTACATGCTATAAAAATAACTTAGAGATATGAGATTTGCTTATCCTCGTTCCGGTAAATTTCTTTTTAAGAAACTTATAATGTAGTCGTATATTCAATTTAGACTATTCTTTATAAAGCTGATTATTATACCCAGAGATCGATAAGTATTGTTAGGAACCACAACTCTCCACAGTGGTATGATATTGTCCACTTTGAGCATAAACTCTGATGGCTTTGCGTTTAGTTTCCCCAAAGGGCCTCATATCAATCTAGATGTATTCTTTACTTATAAACCCATGATCAACTACTTAATTAGCCGATGTGAGACTTCCTTTCAACAATCCTCAAGAATATATCATTTGTAACGAGATGACAAGTTTGAAGTCTCGTTTTTCTTACGTCCTGGTGACCTTCCTCTAGGCCTCCTTGGTTGAGATGATAAAGTCTGATGAAACACGTCGACTAGCAGGTTGCACTTCACTAATTAAGGCAGTCTCTAGTTTCTTCTTGGATCTGTACTTTAATTCCTTTTTCTCCTAACTTATTAGTTTCTTCACTTTCTTCCTGCCAACGCCAATGGATACTTTTGTAGTTATTATGTACAAGTTGATTTTTGTGTTTGTTTGTGTCCGGAGAATTCGAACCTTTAACTATTTGGTCGAGTGTATATACTTAACCAATTTGAATAGAGCAACCTTAAAAACTTTATGTTTTTTTACAAATACACACCGGAGACTCTTTATGCACCGACGGGTACACACAATCTAGCCAAGGCAACGGCTAAAGGAAGCACGGTTGTGTTATTTGTGGCTAGTGCCAATGATAAACAATGGCAGACATCTCAGAAAGTTTTGAGAACCATGCTTGATTCTTTTCAGCTCTAG

mRNA sequence

ATGAGCAAATCTCAAAACACAGACCATCTAGCATATGGAAATGTGCAACCATACCAGTTCCTTCTGCCTCCAACTTGGAAACAAGTGCGTGTAGCTAACATTTTATCTGGTAATTACTGTCAACCCAAGTGTGCAGAGCCTTGGGTGGAGGTAGTGGCTTCCCCTTTGGTACGTCTCACTAATAAACCCAATGCCACGATTGAAGACATAGGTAGCCCTGACAAGGTTATTCTTGGCCCTTTTGTTACTGGGAATACATTCGATCCCGAAGAACTCGTTGAATCATCAGTTGAGAAACTCGGTGATCATACGGCAACGGCTAAAGGAAGCACGGTTGTGTTATTTGTGGCTAGTGCCAATGATAAACAATGGCAGACATCTCAGAAAGTTTTGAGAACCATGCTTGATTCTTTTCAGCTCTAG

Coding sequence (CDS)

ATGAGCAAATCTCAAAACACAGACCATCTAGCATATGGAAATGTGCAACCATACCAGTTCCTTCTGCCTCCAACTTGGAAACAAGTGCGTGTAGCTAACATTTTATCTGGTAATTACTGTCAACCCAAGTGTGCAGAGCCTTGGGTGGAGGTAGTGGCTTCCCCTTTGGTACGTCTCACTAATAAACCCAATGCCACGATTGAAGACATAGGTAGCCCTGACAAGGTTATTCTTGGCCCTTTTGTTACTGGGAATACATTCGATCCCGAAGAACTCGTTGAATCATCAGTTGAGAAACTCGGTGATCATACGGCAACGGCTAAAGGAAGCACGGTTGTGTTATTTGTGGCTAGTGCCAATGATAAACAATGGCAGACATCTCAGAAAGTTTTGAGAACCATGCTTGATTCTTTTCAGCTCTAG

Protein sequence

MSKSQNTDHLAYGNVQPYQFLLPPTWKQVRVANILSGNYCQPKCAEPWVEVVASPLVRLTNKPNATIEDIGSPDKVILGPFVTGNTFDPEELVESSVEKLGDHTATAKGSTVVLFVASANDKQWQTSQKVLRTMLDSFQL

Homology

[Close]

BLAST of CmoCh13G002010 vs. ExPASy Swiss-Prot
Match: Q9LXX5 (PsbP domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PPD6 PE=1 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 1.0e-51
Identity = 104/173 (60.12%), Postives = 124/173 (71.68%), Query Frame = 0


Query: 2   SKSQNTDHLAYGNVQPYQFLLPPTWKQVRVANILSGNYCQPKCAEPWVE----------- 61
           +K  +T  L  GNVQPYQF+LPP WKQ+R+ANILSGNYCQPKCAEPW+E           
Sbjct: 90  AKPSDTPALRAGNVQPYQFVLPPNWKQLRIANILSGNYCQPKCAEPWIEVKFENEKQGKV 149

Query: 62  -VVASPLVRLTNKPNATIEDIGSPDKVI--LGPFVTGNTFDPEELVESSVEKLGDHT--- 121
            VVASPL+RLTNKPNATIED+G P+KVI  LGPFVTGN++D +EL+++S+EK+GD T   
Sbjct: 150 QVVASPLIRLTNKPNATIEDLGEPEKVIASLGPFVTGNSYDSDELLKTSIEKIGDQTYYK 209

Query: 122 -----------------ATAKGSTVVLFVASANDKQWQTSQKVLRTMLDSFQL 141
                            ATAKGSTVVLFV SA +KQWQ+SQK L  +LDSFQL
Sbjct: 210 YVLETPFALTGSHNLAKATAKGSTVVLFVVSATEKQWQSSQKTLEAILDSFQL 262

[Close]

BLAST of CmoCh13G002010 vs. ExPASy TrEMBL
Match: A0A6J1KBG9 (psbP domain-containing protein 6, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111493415 PE=4 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 2.4e-56
Identity = 121/170 (71.18%), Postives = 129/170 (75.88%), Query Frame = 0


Query: 5   QNTDHLAYGNVQPYQFLLPPTWKQVRVANILSGNYCQPKCAEPWVE------------VV 64
           ++T  L  GNVQPYQF+LPPTWKQ RVANILSGNYCQPKCAEPWVE            VV
Sbjct: 91  RDTPALRAGNVQPYQFILPPTWKQTRVANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVV 150

Query: 65  ASPLVRLTNKPNATIEDIGSPDKVI--LGPFVTGNTFDPEELVESSVEKLGDHT------ 124
           ASPL+RLTNKPNATIEDIGSP+KVI  LGPFVTGNT+DPEEL+ESSVEKLGD T      
Sbjct: 151 ASPLIRLTNKPNATIEDIGSPEKVIASLGPFVTGNTYDPEELLESSVEKLGDQTYYKYTL 210

Query: 125 --------------ATAKGSTVVLFVASANDKQWQTSQKVLRTMLDSFQL 141
                         ATAKGSTVVLFVASANDKQWQ S+KVLRTMLDSFQL
Sbjct: 211 ETPYALTGTHNLAKATAKGSTVVLFVASANDKQWQASEKVLRTMLDSFQL 260

[Close]

BLAST of CmoCh13G002010 vs. ExPASy TrEMBL
Match: A0A6J1G9G7 (psbP domain-containing protein 6, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111452175 PE=4 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 2.4e-56
Identity = 121/170 (71.18%), Postives = 129/170 (75.88%), Query Frame = 0


Query: 5   QNTDHLAYGNVQPYQFLLPPTWKQVRVANILSGNYCQPKCAEPWVE------------VV 64
           ++T  L  GNVQPYQF+LPPTWKQ RVANILSGNYCQPKCAEPWVE            VV
Sbjct: 95  RDTPALRAGNVQPYQFILPPTWKQTRVANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVV 154

Query: 65  ASPLVRLTNKPNATIEDIGSPDKVI--LGPFVTGNTFDPEELVESSVEKLGDHT------ 124
           ASPL+RLTNKPNATIEDIGSP+KVI  LGPFVTGNT+DPEEL+ESSVEKLGD T      
Sbjct: 155 ASPLIRLTNKPNATIEDIGSPEKVIASLGPFVTGNTYDPEELLESSVEKLGDQTYYKYTL 214

Query: 125 --------------ATAKGSTVVLFVASANDKQWQTSQKVLRTMLDSFQL 141
                         ATAKGSTVVLFVASANDKQWQ S+KVLRTMLDSFQL
Sbjct: 215 ETPYALTGTHNLAKATAKGSTVVLFVASANDKQWQASEKVLRTMLDSFQL 264

[Close]

BLAST of CmoCh13G002010 vs. ExPASy TrEMBL
Match: A0A0A0LVB3 (PsbP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G088470 PE=4 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 3.5e-55
Identity = 119/173 (68.79%), Postives = 128/173 (73.99%), Query Frame = 0


Query: 2   SKSQNTDHLAYGNVQPYQFLLPPTWKQVRVANILSGNYCQPKCAEPWVEV---------- 61
           +   +T  L  GNVQPYQF+LPPTWKQ RVANILSGNYCQPKCAEPWVEV          
Sbjct: 91  ASQSDTPALRAGNVQPYQFILPPTWKQTRVANILSGNYCQPKCAEPWVEVKFEDDKQGKI 150

Query: 62  --VASPLVRLTNKPNATIEDIGSPDKVI--LGPFVTGNTFDPEELVESSVEKLGDHT--- 121
             VASPL+RLTNKPNATIEDIGSP+KVI  LGPFVTG+T+DPEEL+ESSVEKLGD T   
Sbjct: 151 QIVASPLIRLTNKPNATIEDIGSPEKVIASLGPFVTGSTYDPEELLESSVEKLGDQTYYK 210

Query: 122 -----------------ATAKGSTVVLFVASANDKQWQTSQKVLRTMLDSFQL 141
                            ATAKGSTVVLFVASANDKQWQ S+KVLRTMLDSF L
Sbjct: 211 YTLETPYALTGTHNLAKATAKGSTVVLFVASANDKQWQASEKVLRTMLDSFHL 263

[Close]

BLAST of CmoCh13G002010 vs. ExPASy TrEMBL
Match: A0A5A7U7M4 (PsbP domain-containing protein 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold769G00470 PE=4 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 7.7e-55
Identity = 118/169 (69.82%), Postives = 128/169 (75.74%), Query Frame = 0


Query: 6   NTDHLAYGNVQPYQFLLPPTWKQVRVANILSGNYCQPKCAEPWVE------------VVA 65
           +T  L  GNVQPYQF+LPPTWKQ RVANILSGNYCQPKCAEPWVE            VVA
Sbjct: 95  DTPALRAGNVQPYQFILPPTWKQTRVANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVA 154

Query: 66  SPLVRLTNKPNATIEDIGSPDKVI--LGPFVTGNTFDPEELVESSVEKLGDHT------- 125
           SPL+RLTNKPNATIEDIGSP+KVI  LGPFVTG+T+DP+EL+ESSVEKLGD T       
Sbjct: 155 SPLIRLTNKPNATIEDIGSPEKVIASLGPFVTGSTYDPDELLESSVEKLGDQTYYKYTLE 214

Query: 126 -------------ATAKGSTVVLFVASANDKQWQTSQKVLRTMLDSFQL 141
                        ATAKGSTVVLFVASANDKQWQ S+KVLRTMLDSF+L
Sbjct: 215 TPYALTGTHNLAKATAKGSTVVLFVASANDKQWQASEKVLRTMLDSFRL 263

[Close]

BLAST of CmoCh13G002010 vs. ExPASy TrEMBL
Match: A0A1S3CJG7 (psbP domain-containing protein 6, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103501655 PE=4 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 7.7e-55
Identity = 118/169 (69.82%), Postives = 128/169 (75.74%), Query Frame = 0


Query: 6   NTDHLAYGNVQPYQFLLPPTWKQVRVANILSGNYCQPKCAEPWVE------------VVA 65
           +T  L  GNVQPYQF+LPPTWKQ RVANILSGNYCQPKCAEPWVE            VVA
Sbjct: 95  DTPALRAGNVQPYQFILPPTWKQTRVANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVA 154

Query: 66  SPLVRLTNKPNATIEDIGSPDKVI--LGPFVTGNTFDPEELVESSVEKLGDHT------- 125
           SPL+RLTNKPNATIEDIGSP+KVI  LGPFVTG+T+DP+EL+ESSVEKLGD T       
Sbjct: 155 SPLIRLTNKPNATIEDIGSPEKVIASLGPFVTGSTYDPDELLESSVEKLGDQTYYKYTLE 214

Query: 126 -------------ATAKGSTVVLFVASANDKQWQTSQKVLRTMLDSFQL 141
                        ATAKGSTVVLFVASANDKQWQ S+KVLRTMLDSF+L
Sbjct: 215 TPYALTGTHNLAKATAKGSTVVLFVASANDKQWQASEKVLRTMLDSFRL 263

[Close]

BLAST of CmoCh13G002010 vs. NCBI nr
Match: XP_023524584.1 (psbP domain-containing protein 6, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 228.0 bits (580), Expect = 5.0e-56
Identity = 121/170 (71.18%), Postives = 129/170 (75.88%), Query Frame = 0


Query: 5   QNTDHLAYGNVQPYQFLLPPTWKQVRVANILSGNYCQPKCAEPWVE------------VV 64
           ++T  L  GNVQPYQF+LPPTWKQ RVANILSGNYCQPKCAEPWVE            VV
Sbjct: 60  RDTPALRAGNVQPYQFILPPTWKQTRVANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVV 119

Query: 65  ASPLVRLTNKPNATIEDIGSPDKVI--LGPFVTGNTFDPEELVESSVEKLGDHT------ 124
           ASPL+RLTNKPNATIEDIGSP+KVI  LGPFVTGNT+DPEEL+ESSVEKLGD T      
Sbjct: 120 ASPLIRLTNKPNATIEDIGSPEKVIASLGPFVTGNTYDPEELLESSVEKLGDQTYYKYTL 179

Query: 125 --------------ATAKGSTVVLFVASANDKQWQTSQKVLRTMLDSFQL 141
                         ATAKGSTVVLFVASANDKQWQ S+KVLRTMLDSFQL
Sbjct: 180 ETPYALTGTHNLAKATAKGSTVVLFVASANDKQWQASEKVLRTMLDSFQL 229

[Close]

BLAST of CmoCh13G002010 vs. NCBI nr
Match: XP_022998891.1 (psbP domain-containing protein 6, chloroplastic [Cucurbita maxima])

HSP 1 Score: 228.0 bits (580), Expect = 5.0e-56
Identity = 121/170 (71.18%), Postives = 129/170 (75.88%), Query Frame = 0


Query: 5   QNTDHLAYGNVQPYQFLLPPTWKQVRVANILSGNYCQPKCAEPWVE------------VV 64
           ++T  L  GNVQPYQF+LPPTWKQ RVANILSGNYCQPKCAEPWVE            VV
Sbjct: 91  RDTPALRAGNVQPYQFILPPTWKQTRVANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVV 150

Query: 65  ASPLVRLTNKPNATIEDIGSPDKVI--LGPFVTGNTFDPEELVESSVEKLGDHT------ 124
           ASPL+RLTNKPNATIEDIGSP+KVI  LGPFVTGNT+DPEEL+ESSVEKLGD T      
Sbjct: 151 ASPLIRLTNKPNATIEDIGSPEKVIASLGPFVTGNTYDPEELLESSVEKLGDQTYYKYTL 210

Query: 125 --------------ATAKGSTVVLFVASANDKQWQTSQKVLRTMLDSFQL 141
                         ATAKGSTVVLFVASANDKQWQ S+KVLRTMLDSFQL
Sbjct: 211 ETPYALTGTHNLAKATAKGSTVVLFVASANDKQWQASEKVLRTMLDSFQL 260

[Close]

BLAST of CmoCh13G002010 vs. NCBI nr
Match: XP_022948517.1 (psbP domain-containing protein 6, chloroplastic [Cucurbita moschata] >KAG6607176.1 PsbP domain-containing protein 6, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 228.0 bits (580), Expect = 5.0e-56
Identity = 121/170 (71.18%), Postives = 129/170 (75.88%), Query Frame = 0


Query: 5   QNTDHLAYGNVQPYQFLLPPTWKQVRVANILSGNYCQPKCAEPWVE------------VV 64
           ++T  L  GNVQPYQF+LPPTWKQ RVANILSGNYCQPKCAEPWVE            VV
Sbjct: 95  RDTPALRAGNVQPYQFILPPTWKQTRVANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVV 154

Query: 65  ASPLVRLTNKPNATIEDIGSPDKVI--LGPFVTGNTFDPEELVESSVEKLGDHT------ 124
           ASPL+RLTNKPNATIEDIGSP+KVI  LGPFVTGNT+DPEEL+ESSVEKLGD T      
Sbjct: 155 ASPLIRLTNKPNATIEDIGSPEKVIASLGPFVTGNTYDPEELLESSVEKLGDQTYYKYTL 214

Query: 125 --------------ATAKGSTVVLFVASANDKQWQTSQKVLRTMLDSFQL 141
                         ATAKGSTVVLFVASANDKQWQ S+KVLRTMLDSFQL
Sbjct: 215 ETPYALTGTHNLAKATAKGSTVVLFVASANDKQWQASEKVLRTMLDSFQL 264

[Close]

BLAST of CmoCh13G002010 vs. NCBI nr
Match: XP_023521520.1 (psbP domain-containing protein 6, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 228.0 bits (580), Expect = 5.0e-56
Identity = 121/170 (71.18%), Postives = 129/170 (75.88%), Query Frame = 0


Query: 5   QNTDHLAYGNVQPYQFLLPPTWKQVRVANILSGNYCQPKCAEPWVE------------VV 64
           ++T  L  GNVQPYQF+LPPTWKQ RVANILSGNYCQPKCAEPWVE            VV
Sbjct: 95  RDTPALRAGNVQPYQFILPPTWKQTRVANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVV 154

Query: 65  ASPLVRLTNKPNATIEDIGSPDKVI--LGPFVTGNTFDPEELVESSVEKLGDHT------ 124
           ASPL+RLTNKPNATIEDIGSP+KVI  LGPFVTGNT+DPEEL+ESSVEKLGD T      
Sbjct: 155 ASPLIRLTNKPNATIEDIGSPEKVIASLGPFVTGNTYDPEELLESSVEKLGDQTYYKYTL 214

Query: 125 --------------ATAKGSTVVLFVASANDKQWQTSQKVLRTMLDSFQL 141
                         ATAKGSTVVLFVASANDKQWQ S+KVLRTMLDSFQL
Sbjct: 215 ETPYALTGTHNLAKATAKGSTVVLFVASANDKQWQASEKVLRTMLDSFQL 264

[Close]

BLAST of CmoCh13G002010 vs. NCBI nr
Match: XP_038895408.1 (psbP domain-containing protein 6, chloroplastic [Benincasa hispida])

HSP 1 Score: 226.1 bits (575), Expect = 1.9e-55
Identity = 120/169 (71.01%), Postives = 129/169 (76.33%), Query Frame = 0


Query: 6   NTDHLAYGNVQPYQFLLPPTWKQVRVANILSGNYCQPKCAEPWVE------------VVA 65
           +T  L  GNVQPYQF+LPPTWKQ RVANILSGNYCQPKCAEPWVE            VVA
Sbjct: 129 DTPALRAGNVQPYQFILPPTWKQTRVANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVA 188

Query: 66  SPLVRLTNKPNATIEDIGSPDKVI--LGPFVTGNTFDPEELVESSVEKLGDHT------- 125
           SPL+RLTNKPNATIEDIGSP+KVI  LGPFVTG+T+DPEEL+ESSVEKLGD T       
Sbjct: 189 SPLIRLTNKPNATIEDIGSPEKVIASLGPFVTGSTYDPEELLESSVEKLGDQTYYKYTLE 248

Query: 126 -------------ATAKGSTVVLFVASANDKQWQTSQKVLRTMLDSFQL 141
                        ATAKGSTVVLFVASANDKQWQ+S+KVLRTMLDSFQL
Sbjct: 249 TPYALTGTHNLAKATAKGSTVVLFVASANDKQWQSSEKVLRTMLDSFQL 297

[Close]

BLAST of CmoCh13G002010 vs. TAIR 10
Match: AT3G56650.1 (Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein )

HSP 1 Score: 204.1 bits (518), Expect = 7.1e-53
Identity = 104/173 (60.12%), Postives = 124/173 (71.68%), Query Frame = 0


Query: 2   SKSQNTDHLAYGNVQPYQFLLPPTWKQVRVANILSGNYCQPKCAEPWVE----------- 61
           +K  +T  L  GNVQPYQF+LPP WKQ+R+ANILSGNYCQPKCAEPW+E           
Sbjct: 90  AKPSDTPALRAGNVQPYQFVLPPNWKQLRIANILSGNYCQPKCAEPWIEVKFENEKQGKV 149

Query: 62  -VVASPLVRLTNKPNATIEDIGSPDKVI--LGPFVTGNTFDPEELVESSVEKLGDHT--- 121
            VVASPL+RLTNKPNATIED+G P+KVI  LGPFVTGN++D +EL+++S+EK+GD T   
Sbjct: 150 QVVASPLIRLTNKPNATIEDLGEPEKVIASLGPFVTGNSYDSDELLKTSIEKIGDQTYYK 209

Query: 122 -----------------ATAKGSTVVLFVASANDKQWQTSQKVLRTMLDSFQL 141
                            ATAKGSTVVLFV SA +KQWQ+SQK L  +LDSFQL
Sbjct: 210 YVLETPFALTGSHNLAKATAKGSTVVLFVVSATEKQWQSSQKTLEAILDSFQL 262

The following BLAST results are available for this feature:

BLAST of CmoCh13G002010 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LXX5	1.0e-51	60.12	PsbP domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of CmoCh13G002010 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KBG9	2.4e-56	71.18	psbP domain-containing protein 6, chloroplastic OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1G9G7	2.4e-56	71.18	psbP domain-containing protein 6, chloroplastic OS=Cucurbita moschata OX=3662 GN...	[more]
A0A0A0LVB3	3.5e-55	68.79	PsbP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G088470 PE=4 S...	[more]
A0A5A7U7M4	7.7e-55	69.82	PsbP domain-containing protein 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A1S3CJG7	7.7e-55	69.82	psbP domain-containing protein 6, chloroplastic OS=Cucumis melo OX=3656 GN=LOC10...	[more]

BLAST of CmoCh13G002010 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023524584.1	5.0e-56	71.18	psbP domain-containing protein 6, chloroplastic-like [Cucurbita pepo subsp. pepo...	[more]
XP_022998891.1	5.0e-56	71.18	psbP domain-containing protein 6, chloroplastic [Cucurbita maxima]	[more]
XP_022948517.1	5.0e-56	71.18	psbP domain-containing protein 6, chloroplastic [Cucurbita moschata] >KAG6607176...	[more]
XP_023521520.1	5.0e-56	71.18	psbP domain-containing protein 6, chloroplastic-like [Cucurbita pepo subsp. pepo...	[more]
XP_038895408.1	1.9e-55	71.01	psbP domain-containing protein 6, chloroplastic [Benincasa hispida]	[more]

BLAST of CmoCh13G002010 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G56650.1	7.1e-53	60.12	Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.40.1000.10	Mog1/PsbP, alpha/beta/alpha sandwich	coord: 1..103 e-value: 6.2E-8 score: 34.6 coord: 104..140 e-value: 3.2E-6 score: 29.0
None	No IPR available	PANTHER	PTHR31407	FAMILY NOT NAMED	coord: 4..104 coord: 104..139
None	No IPR available	PANTHER	PTHR31407:SF18	PSBP DOMAIN-CONTAINING PROTEIN 6, CHLOROPLASTIC	coord: 4..104 coord: 104..139
IPR016123	Mog1/PsbP, alpha/beta/alpha sandwich	SUPERFAMILY	55724	Mog1p/PsbP-like	coord: 12..139

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh13G002010.1	CmoCh13G002010.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0009523	photosystem II