CmoCh12G007010 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh12G007010
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionRT_RNaseH domain-containing protein
LocationCmo_Chr12: 5349582 .. 5358386 (-)
RNA-Seq ExpressionCmoCh12G007010
SyntenyCmoCh12G007010
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAATTGAAGAAAAAAAGGAAGAGAGAGAGTTATTTGGCTACAGTTGGAGAGGTGAGAAGGTTTTCACAAAAATCGATCTTTGTACTTATGTACAATGGAGGATTTTTGGTCTCTAACTATAACAACTTAGTTTTGCCTAGTGTTTTCCAATCTCTTTTACAGGAATTTGAAGACATGTTTCAAGATAAAGAAATACCTCCCATTAGAGGTACTGAACGTAAAATAGACCTCATTCCAAGGACTGTCATTCCTTATAAGCCAGCTTATCGGGTCAATCCAACCGAGACAAAAGAAATTTAAAGGCAAGTGGAGGAGCTCATGGAGAAGGGCTATCTATGAGAAAGTTTGAGTCCATGTTCTATACGAGACTTATTGGTGCCAAAGAAAGATGAAACTTGGCGCATATGCATGGATAATAGAGTCATCAACAAAATCACGGTAAAGTGTCGACATCCTATTCCTAGGTTCACGATATGCTTGATTTATTGCATGATTCGTGTCTATTTATAAAAATTATTTTGAAATATGGATATCATCAAATTAGAATGCATATAGGAGATGAATAGAAACTGACTTTCAATATTAAGTTTGGATTGTATGAATGGTTTGTTATGCCTTTTAAGTTAACTAATACTCCTAGTACACCTATGCGTTTAATATATAACATTTTGAGAAAATATGATATGAACAAAGAGACATCAATCATACAATATACTTCAACGAAGATGCGAAGAAAATGTTGTCAAAATTATCAAGCAATTCATGCCACATTGAAGAGGAATGAATTTTGATTGTTATAAATTTTGGGTGGGTTACAATTTAGAGTAATTTGGAGTTATTGTATTTTAAGACTTTTTATGTACTTTAGGTTACATTTACATAATGACTAATTATGGTTATTAAGTATGAATGTTTCAACTTTTGGTATGCCTTTAATAGTTTCATTTTGAGGCTATATAAAGCCATGTATGTTGTATTTTTAAGTAGACTTGGAAAATAGAGTAAAAGAAACATTTGTGCTCTTCTTTAGCCAATGGCTAAGTTTCTTTGCAATTCTATGTAGTTTAGGTTTCATGTAGAATCATTCAAGCTCGACATGATCAATCTTGCTTGTGGAGTGATTCAAATCTCAATCAAGTGTTCTTGCGTTGAGATATTTGATCAACAAGAATCATTCAAGCTAGACATGATCGATCTTGCTTGTGGAGTGATTCGAATCTCAAACAATGTTCTTGCCTTGAGATATTCGATCAACAAGGTAATCCGAATCTTATTCCCCTTGTATTGATTCCTTATCTTATCAATATATATAAGAAAACATGTTGTTTATATTGATGATATTATAATTTATTTGAAGATTTTGCTTTGAGCATGTGGAGCATGTTAAATTAGTCTTGATTACACATAGAAAAGAGAAATTTAATTTTAATATGGGTAGTTTTTGCATGGAACAAGTTCACTCTATTAGCTTCATAGTTGATAAAAGTAGAATAGCATTAGATAGAGACAAAGTTAAATTCATTATGGATTTGCCAACACCAAAGAGTCCACGTAAAGTTCGGAGTTTTCATGAGTTAGCTAACCTCTATAAGAGATTTATAAACGATTTTAGAACCATAACTGAACTATTGAATGACTTAGTGAAAAAGAATGTTGTTCTTAAATGGGGAGGAATGCAAGAGTATGCATTCAAATTGCTTAGGAACAAATTAAGCAATTCATCATTATTTGTTTTGCGTAGCTTTTATAAAACTTTTGAAATTGGATGTGATGCATGTGGTTTGGTCATAAGTGCTATTTTAATTCAAGATGAAGAGTCGTTAGTGTATTTTAGTGAAAAACTAAATGGGGCAATATTGAAATACCCTACCTATGATAAAGAATTGTTTGTAGTTCATATATTGCATGTGCCGCAACACTACTTATGGTCTAGAGAATTTGTGATCCACTTTGATCATGAAAACTTGAAGTATGTGGAGGGTCAAAGCAAACTGAACCGTAGACATGTAAAGTGGGTGGAATTTATTGAAACATTTTCGTATGTCATCAAGTATAAGCAAGGTAAGAATAATACAGTAGCTCATGTGTTATATAAAAGGTATGATCTCTTTACTTCTCTTAGTGCAAAAATTCTTGGAGTTGAGCATATTATTGAATTATATAGAGATGACCAAGACTTTAGAACTATTTATGCATCTTGTCTTGCAAAAAAAGTGGTGGATGATTATTTTGTGTTTCATAAATTTTTAATTACTAAGAGTATGCTTTGTATTCCTAAATGCTCTATAAAAGATTTGTTTTTGAGAGAAGCATATGGTGGTGCCTTAATGGGACATCTTAGGATTAATAAAGTTTATAAGATGTTGTATAAACACTTTTGTTGGCCGAAGATGAAGCATGATAAGCCCCAACAATGTTGGATTTTGCAAAGCTAGAGGTCCTTCTAGAATCCTTGCCAAAACGTTCACAGAAAAAACTAACTTAACGGATTGATTCCAACCAAGAGCTGGTTAGAAGATGAATGACTCTTAGATCGAACTTGGAATCTATGATGGTCACTTTTAGATACCAAGACAATTCACTCCAGAATTAGCTTGATCAAAACTAATTCAATGAATCAGTTTAAACATCAAACCTAAAGCAAGGTTTGAAAAAGAATAACACCGAAAGGTTATCAAGAAAAACACAAAGATTTTGTCTGTATTCAACCAAAAAATAAAATAAAGTTCAGCCACCAACCACTAATAAATGCTATTAAATACAAATTGAAGAAAATAAGGTAATTCATAAATTGTTTTAATTGGTAGTTCAACTACTAAAGGCAAGTCTTTTAATTACTTTCCAATGTCAGCCACTCCATTATCTTCTTGATTTGATATGCTAATGCTATAAAGATTTTTGGGCTAAAAAATCTTTGTTTCAACTTGTACACTAGCTAGCTTTCGAAGATGCAATGTATAGGTCTCTCGAATCTTCTTAACCTTGCTTCTTGTAATTGGTCCTTCGGGTACATGCAAAGGGTCAGTAGTTGAATTTATATCATCCTCCCTTTCTTTAAGAGGATTTGTCCTCAAATCAAGGTCTTCATTCACTACATCAAATGGAGTCAAATCAGCCACATTAAAAGTTGAACTTACATTGTACTCACCTCTGAGATCTAGCTTGTATGTATTGTCATTGATCCGCTCTAGTACTTGAAAAGGACCATCTCCTCTTGGTTGAAGTTTAGACTTTCTCTGACTTGGAAACCTTTCCTTTCGTAGATGAACCCAAACCCAGTCACCTTATTTAAAAATCAATTTCTTTCTTCCTTTGTTCTTGCGCGTGACTAGTTTTTTATTTTTGTTTTCAATTCTTTCTTTTATGTCTTTGTGAATTTTTTTTATGTATTCGGCTCTTGAAGAAGCTGCATCATTAGCAAACATATTAGGTGGCAAAGGCGATAAATCTAGAGGAGTTAAAGGATTAAATCCTTACACAACCTCAAAAGGTGAACACTGAGTGGTGCTATGTATTGCTCTATTGTATGCAAATTCAACAAAAGGTAGAGTCTCTTCCCAAGACTTATGATTTTTAGAAATTAGTGACCTAAGTAAGGCTCCTAATGTTCTATTAACAACCTCAGTTTATCCATCCGTTTGGGGGTGACATGTTGTAGAAAATAGAAGCTTAGTTGATATGAACCAAGAGATATCAATCATACAATATACTTCAATAAAGATCTGAAGAAAATATTGTTGAAATTATCAAAAGATGTTTCAATTCATGCCACATTGAAAAAGAATGAAGTTTGATTGTTACAAATTTTGGGTGGGTTACAGTTTAGAGTAATTTAGAGTTATTGTATTTTAAGACATTTTATTTACTTTAGGTTACATTTACATAATGGCTAATTATGGTCATTAAGTATGAATGTTACAACTTTTGGAATGCCTTTAGTAGTTTCATTTTGAGGCTATATAAAGCCATGTATGTTGTATTTGTAAGTAGACTTGGAAAATATAGTAAAAGAAGCATTTGTGCTTTTCAAAGTGATTTCAAAACTAAATTTATAATTTAACTTTAAGAGTTTTCTCATCTCAATTATAGTTCAGTGGGTTTTGAGGAGAGTAATCTCGACAAAGGAATTTTGTGCTAGAATCTTATTTTGTTGAGGCAAGGCTGCCCTAATTCCCATCCGTTGTTCTTCCACTGTCTGTACGACGAAAGAGACGTGGAGATGAATCAGTTGTAGTCACTACGGGGCATACTCCTCCTCTCCTAGCCCACGTTGTTCAGGGAATGAGATAGCTTCAGCTGCAGATGATTTTGACGCGTTTTAGACTTGAACAGTGAATATTGAACCGGTGTTTTTGGTGACTTAAAAAATGGTTTGAAATAGGGTTTGGTGTGTGTATTGTATGGTGGAGATGACATGTCTACATTGGGCTAATTGAATGGCTCCCATAGCTTAGGGCGCTATTATATGAATGTGACCATTTTTCAAAGATGGCTTCATCATCATCCATCCCATCCATGCACATAAACATACACATCATCAATGACATACACACGAGCGAGACAGATGAGAGTCGTTTAAAATAGGATTTTCAATTTCCGTTCTATCAAAAATTAATTTTACGATATTTGACATTTATGACCTCTCTATACTCTATAATAACGATTCCCTTAACATTACGATATTTACCACAATCATGCTATCTATAGATCAAATTATTTCGTTGCTTGAAGTTGACCTAACTGTCTACACCTTCATTGTATGTGCTCGAAGTAGGAGTTTTAAGTGGTAGTCACAATTTCAACGATTGTTTGTTGTGAAAGGTACCTTGTTGATCGAATATCTCAAGGTAAGAACATTGTTTGAGATTCGAATCACTCCACAAGCAAGATCGATCATGTCTAGCTTGAATGATTCTTGTTGATCAAATATCTGAAGGCAAGAACACTTGCTTGAGATTCAAATCACTCCACAAGCAAGATTGATCATGTCGAGCTTGAATGATTTTACATGCAACCTAAACTACATAGAATTGCAAAAAAAAAACTTAGCTATTGCCTAATGAAAAGCACAAATGCTTCTTTTACTATATTTTCCAAGTCTCTACTTATAAATACAACATACAAGGCTTTATATAGCCTAAAAAATGAAACTATTAAAGGCATTCCAAGATTTGTAACATTCATACTTTATGGCCATAATTAGCCATTATGTAAATGTAACCTAAATAAATAAAAAGTCTTAAAATACATTAATGAAATATAATAACTCTCAATTGTAACCCACCCAAAATTTGTAACAATCAAACTTCATTCTTCTTCAATGTGACATGAATTTAAACATCTTTTGATAATTTTGACAACCTTTTCTTCACATCTTCATTGAAGTATATTCTATGATTGTTGTCTCTTGGTTCATATCATTAGTTCCCAACTTTCCCCACAAAACCTTCAAAAAATGGCTTAAAAATTTTACATCCCTGTCACTAACAATGGTTTTTGGAATACCATGCCATCTAACCACTTCCTTAAAGAATAGATTAGCTATGTTGGTAGCATCATTTGTTTTGTTACATGGAATGAAATGTGCCATCTTACTAAACCTATCAACCACTACAAAAATGCTATCATGGTGTTTTCTAGTCTTTGGTAAAGACCATGTGGTTGTCTTAGACTTAGCTTCCTTACATTTAAAACATTGCTGGCATACTTTGTTCACATCTTTCCTCATTTTCAACCAATAAAAATGTTCACACAACATGCTATATGTTTTAAATTCTCCAAAATGTCCCATAAGTCCTCCCCCATGAGCCTCCTTCACAAGTAACTCTCGAATAGAACATCTAGGGATACAAATTTTACCCTTCCTAAAAAGCATATCATCGAACACCATATGATCTTGCACATATTTCCCTTCTAAACATTGCATATACACATCATAAAATTCAGATTTTTCAACTTTGTACAATTCAATCATGTGTTTAAAACCAAGAATTTTTGGAGTAAGGAAAGAAAATAAAGCATACCTTCTTGATAATGCATCTGCGACCACATTATCCCTCCCCTCTTTGTAATGGATTACATAAGGAAACGTCTCAATGAATTCCACCCATTTAGCATGTCTCCTATTTAGCTTTGTTTGGCTTTTGAGGTGCTTCAAACTTTCATGGTCCGTATGAATAACAAACTCTTTTGGCCACAAATAATGTTGCCAAACTTGCAAAGCCCTCACTAGTGCATATAACTCTTTGTCATAAGTCGGATAGTTGAGTTGTGCTCCATTAAGCTTTTCACTAAAGAACATGATTGGCCTTTTTTCCTGCATTAAAACAGCCCCTATGCCTATCCCACTTGCATCAAAGTTAGGTAAAGCAAGACAAGGTGCATTGGTTAATTTATCTTTCAGTTCATTGAATGCATTCTCTTGTTTTTCCTTCCATTCAAATTTCACATGCTTTTTAAAAATTTCATTAAATGGTGATGCTATGATACTGAAATCCTTAATGAATCTCCTATAGAAACTAGCGAAACCATGAAAAGATCTTACCTCGGTTGCATTTGTGGGTGTTGGCCATTCTCTAATAGCTTTTACGTTTTCTTCATCAACTTGTACTCCCTTCTTTCCAACTAAGAACCCTAGGAAGTTGACTTAGTCTAGACAAAAACTGCACTTTTTGAAGTTGGCATAAAACTTCTCTTCTCTAAGTTTAAACAAATATTTCTTAACGTGCAAAATATGATCATTCAAGCTTTTTGAGTAAACAAGGATATCATCAAAGTATACAACAACAAATTTTCCAATATAGTCTCTCAAAACATGATTCATTAACCTCATAAAAGTACTTGGTGCATTTGTAAGGCCAAATGGCATAACGAGCCACTCATAAAGCCCAAACTTTGTTTTGAAAGCCGTTTTCCACTCATCTCCCACATTCATTTGAATTTGATGATAACCACTTTTGAGATCTATTTTTGAAAACAGATTAGCACCATATAATTCATCCAACATGTCATCCAATCTAGGAATAGGGTATCGATACTTTACCGTTATCTTGTTGATGGCTCGACAATCAACACACATCATCCACGTGCCATCTTTCTTGGGTACCAAAATCACAGGAACCGAACAAGGACTCATGCTTTCTTGAACATATCCTTTATCCATGAGTTCTTCCACTTGTCACTGAATCTCCTTAGTCTCGGTGAGATTGGTCCTATAGGCAGCCATATTTCGAAGAGTTGCCCCAAGTACGAAGTCAATTTGGTGTTCAATCCCTCTTAGAGGGGGTAACCCCGTACATGCATCTTCATGTAGAAATATGTCATTGAATTCTTGCAAAAGAGACTTAAAAGCACTTGGCAAAGCATCGTCAGTTTTTGGTTCCATTGCTAAACACGTTCCTTTTCACATAAGTACAAATTTTGGTTCTTGGGCTAACATATTCCTCATTTCTCCCATTCTTATAACCAAACTCACATTTTCTCTCTTTTCTTCAAAATATATATTTTTTTCTCTCATGGTTTTCACTCATCCTTTGCCCCTCACTTTACTCTTTTTTTTTTTTTTTTTCACTCTTATCTCTCTCTTTTACCTTAGTTTCTTCTTCATATTCTTTTCTTTTCTTCTGTAATTTCAATTGATCACAACGTACTTCATATGGAGACAATAGAAGTAAAGTAAATTTCTTCCGAAACAAAATAAAAGTATACTTGTTCGTCAAACCATCAAATGTTACCTTTCTATCATATTGCCAAGGTCGGACGAATAAGATGTCTCCCGCATGCATTGGTACAACATCACAAAGAACATCATCTTTATATCTTCAAAGAGTAAAAGAAATGAGAGCTTGGGAATTCACCTTAATTTCTTCTTTGTTTGTCAACCATTGAAGTTTGTATGGTTTTGGATGGGGATGGACAAAAAGTTGAAGTCTTTTTACAAGGAAGCTGCTTACCACATTTGTGCAACTTCCACTATCAATTACCAAGTTGCATGGGTTTCCTTTGATCAAACATCTTGTGTGGAACAAGTTTTCCCTTTGATCTTCAAATTTCTCTTCCTTGATTTGAACATTGACTACCTTTCTTGTGATTAAAGATATGGAATTACCTTCTTCAACATACTCATCATCACTATATGCTGCGATTTCTTCCAAAAGCTGTGAATCATGATCCTCACATTCATCATCTGAATCAAGTATACCATTCCTTATCACCATAACTTTTTTATTAGCACACTCTTTGCTCATGTGTCCAAACCCTTTGCACTTCCAACATTGAAAAGGTGTTAGTTCATGATGTGTACCTCTTTGAATGCTCTTTTTCTTCCTTCAATTGGTCTTCAATTTTGAGAGCATAGTGATACATGTCTTCCAGATATGGTGGTGGATTTCTGTCAACAAGATGAGCAATTTCTCGATTCAAACCTCCAAGGAATCTAGACATGGTATCTTCTTCTTCTTCTCTAACATTTGCTCTTTCCATCATAGTCTCCATCTCTTGATAATATTCTGCCACACTTTTTGTTCCTTGCCTCAAACCTTGCAATTTAGTTTTCAAATTTCTTTCATAATGTTTTGGAACATACCTTTTTCTCATGGCTTCTTTAAGTTCTTCCCAAGTCTCTATTGGATCCTCCCCTTTTCTTCTTCTCTCGGATTTGAGATGTTGGTACCAATCACCAGCATGATTGGTAAATTCGGTAATAGCAAGTCTCATCTTTGTTGAATTTCGATAATCGACCAGGGAAATCACCGAGAGGATATTGTCGACAGGAGGTTGTTGGAAGAAAGATACAATGCGTAA

mRNA sequence

ATGAAATTGAAGAAAAAAAGGAAGAGAGAGAGTTATTTGGCTACAGTTGGAGAGGAATTTGAAGACATGTTTCAAGATAAAGAAATACCTCCCATTAGAGGTACTGAACGTAAAATAGACCTCATTCCAAGGACTGTCATTCCTTATAAGCCAGCTTATCGGTTTAGGTTTCATGTAGAATCATTCAAGCTCGACATGATCAATCTTGCTTGTGGAGTGATTCAAATCTCAATCAAGTGTTCTTGCGTTGAGATATTTGATCAACAAGAATCATTCAAGCTAGACATGATCGATCTTGCTTGTGGAGTGATTCGAATCTCAAACAATGTTCTTGCCTTGAGATATTCGATCAACAAGTATGTGGAGGGTCAAAGCAAACTGAACCGTAGACATGTAAAGTGGGTGGAATTTATTGAAACATTTTCGTATGTCATCAAGTATAAGCAAGAAGCTGCATCATTAGCAAACATATTAGGTGGCAAAGGCGATAAATCTAGAGGAGTTAAAGGATTAAATCCTTACACAACCTCAAAAGGTTACATTTACATAATGGCTAATTATGGTACCTTGTTGATCGAATATCTCAAGGGAAATCACCGAGAGGATATTGTCGACAGGAGGTTGTTGGAAGAAAGATACAATGCGTAA

Coding sequence (CDS)

ATGAAATTGAAGAAAAAAAGGAAGAGAGAGAGTTATTTGGCTACAGTTGGAGAGGAATTTGAAGACATGTTTCAAGATAAAGAAATACCTCCCATTAGAGGTACTGAACGTAAAATAGACCTCATTCCAAGGACTGTCATTCCTTATAAGCCAGCTTATCGGTTTAGGTTTCATGTAGAATCATTCAAGCTCGACATGATCAATCTTGCTTGTGGAGTGATTCAAATCTCAATCAAGTGTTCTTGCGTTGAGATATTTGATCAACAAGAATCATTCAAGCTAGACATGATCGATCTTGCTTGTGGAGTGATTCGAATCTCAAACAATGTTCTTGCCTTGAGATATTCGATCAACAAGTATGTGGAGGGTCAAAGCAAACTGAACCGTAGACATGTAAAGTGGGTGGAATTTATTGAAACATTTTCGTATGTCATCAAGTATAAGCAAGAAGCTGCATCATTAGCAAACATATTAGGTGGCAAAGGCGATAAATCTAGAGGAGTTAAAGGATTAAATCCTTACACAACCTCAAAAGGTTACATTTACATAATGGCTAATTATGGTACCTTGTTGATCGAATATCTCAAGGGAAATCACCGAGAGGATATTGTCGACAGGAGGTTGTTGGAAGAAAGATACAATGCGTAA

Protein sequence

MKLKKKRKRESYLATVGEEFEDMFQDKEIPPIRGTERKIDLIPRTVIPYKPAYRFRFHVESFKLDMINLACGVIQISIKCSCVEIFDQQESFKLDMIDLACGVIRISNNVLALRYSINKYVEGQSKLNRRHVKWVEFIETFSYVIKYKQEAASLANILGGKGDKSRGVKGLNPYTTSKGYIYIMANYGTLLIEYLKGNHREDIVDRRLLEERYNA
Homology
[Close]
BLAST of CmoCh12G007010 vs. ExPASy TrEMBL
Match: A0A438FPM9 (RT_RNaseH domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_065503 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 1.4e-10
Identity = 56/179 (31.28%), Postives = 85/179 (47.49%), Query Frame = 0 

Query: 18  EEFEDMFQD---KEIPPIRGTERKIDLIPRTVIPYKPAYR--------FRFHVESFKLDM 77
           EE++D+F +     +PPIR  E +ID +P T IP +PAYR         + HV+  K   
Sbjct: 79  EEYKDVFPNDVPSGLPPIRRIEHQIDFVPGTTIPIRPAYRSNPEETKELQRHVDDEKGIE 138

Query: 78  IN--LACGVIQISIKCSCVEIFDQQESFKLDMIDLACGVIRISNNVLALRYSINKYVEGQ 137
           ++      + ++    S +E       F   + +           + AL      +++GQ
Sbjct: 139 VDEEKVKAIKELPTPKSIIEEKQPIAYFSEKLNEATLNYPTYDKELYAL------HLKGQ 198

Query: 138 SKLNRRHVKWVEFIETFSYVIKYKQEAASL-ANILGGKGDKSRGVKGLNPYTTSKGYIY 183
            KLNRRH KWVEFIETF YVIKYKQ   ++ A++L      +        +    GY+Y
Sbjct: 199 GKLNRRHAKWVEFIETFPYVIKYKQGKENIVADVLSRSVYGASKKAAFGKFYRLDGYLY 251

[Close]
BLAST of CmoCh12G007010 vs. ExPASy TrEMBL
Match: A0A2N9G1C9 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS21244 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 1.4e-10
Identity = 63/222 (28.38%), Postives = 98/222 (44.14%), Query Frame = 0 

Query: 10   ESYLATVGEEFEDMFQDK---EIPPIRGTERKIDLIPRTVIPYKPAYRFR---------- 69
            E  L    EEFED+F ++   E+PPIRG E +ID +P   IP +PAYR            
Sbjct: 1144 EDQLKLKSEEFEDVFPEEMPNELPPIRGIEHQIDFVPGAAIPNRPAYRSNPEETKELQKA 1203

Query: 70   -FHVESFKLDMINLACGVIQISIKCSCVEIFDQQ---ESFKLDMIDLAC-GVIRISNN-- 129
               V+  K+  I        I+     +  F ++    S K    D     ++R      
Sbjct: 1204 SIEVDEEKVKAIKEWPTPKSITEDRRPIAFFSEKLSGASLKYPTYDKELYALVRALETWQ 1263

Query: 130  --------VLALRYSINKYVEGQSKLNRRHVKWVEFIETFSYVIKYKQEAASLANILGGK 189
                    V+   +   K+++GQ KLN+RH +W+E+IETF YVI+YKQ            
Sbjct: 1264 HYLWPREFVIHTDHESLKHLKGQGKLNQRHARWLEYIETFPYVIRYKQ------------ 1323

Query: 190  GDKSRGVKGLNPYTTSKGYIYIMANYGTLL-IEYLKGNHRED 203
                 G + +   T S+ Y+ + +    +L  EY+K  + +D
Sbjct: 1324 -----GKENIVADTLSRRYVLLTSMSAKMLGFEYVKDMYADD 1348

[Close]
BLAST of CmoCh12G007010 vs. ExPASy TrEMBL
Match: A0A2I0JUV8 (RT_RNaseH domain-containing protein (Fragment) OS=Punica granatum OX=22663 GN=CRG98_019515 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 1.5e-09
Identity = 46/140 (32.86%), Postives = 72/140 (51.43%), Query Frame = 0 

Query: 13  LATVGEEFEDMFQDKE---IPPIRGTERKIDLIPRTVIPYKPAYRFRFHVESFKLDMINL 72
           +  + +E+ED+F ++    +PPIRG E +ID +P  +IP +PAYR     E+ +L     
Sbjct: 1   MGEIRQEYEDVFPEETPHGLPPIRGIEHQIDFVPGMIIPNRPAYRSN-PEETKELQR--- 60

Query: 73  ACGVIQISIKCSCVEIFDQQESFKLDMIDLACGVIRISNNVLALRYSINKYVEGQSKLNR 132
                Q+      +E +                 +     V+   +   K+++GQ KLN+
Sbjct: 61  -----QLYALVRALETWQH--------------YLWPKEFVIHTDHESLKHLKGQHKLNK 117

Query: 133 RHVKWVEFIETFSYVIKYKQ 150
           RH +WVEFIETF YVI+YKQ
Sbjct: 121 RHARWVEFIETFPYVIRYKQ 117

[Close]
BLAST of CmoCh12G007010 vs. ExPASy TrEMBL
Match: A0A2I0JGN5 (RT_RNaseH domain-containing protein OS=Punica granatum OX=22663 GN=CRG98_024200 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 5.8e-09
Identity = 45/136 (33.09%), Postives = 73/136 (53.68%), Query Frame = 0 

Query: 18  EEFEDMFQDKE---IPPIRGTERKIDLIPRTVIPYKPAYRF-RFHVESFKLDMINLACGV 77
           +E+ED+F ++    +PPIRG E +ID +P   IP + AYR      + F+  +  L    
Sbjct: 66  QEYEDVFPEETPYGLPPIRGIEHQIDFVPGATIPNRSAYRSDPEETKEFQRQVSELLEKG 125

Query: 78  IQISIKCSCVEIFDQQESFKLDMIDLACGVIRISNNVLALRYSINKYVEGQSKLNRRHVK 137
            ++S        +D++    +  +      +     V+       K+++GQ KLN+RHV+
Sbjct: 126 EKLSGAALNYPTYDKELYALVRALKTWQYYLWPKEFVIHTDDESLKHLKGQHKLNKRHVR 185

Query: 138 WVEFIETFSYVIKYKQ 150
           WVEFI+TF YVI+YKQ
Sbjct: 186 WVEFIKTFPYVIRYKQ 201

[Close]
BLAST of CmoCh12G007010 vs. ExPASy TrEMBL
Match: A0A2N9HBQ8 (Integrase catalytic domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS37454 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 5.8e-09
Identity = 50/160 (31.25%), Postives = 79/160 (49.38%), Query Frame = 0 

Query: 18  EEFEDMFQD---KEIPPIRGTERKIDLIPRTVIPYKPAYR-----------FRFHVESFK 77
           +E+ED+F +     +PPIRG E +ID +P   IP +PAYR            R  V+  K
Sbjct: 72  KEYEDVFPNDVPSGLPPIRGIEHQIDFVPGATIPNRPAYRSNPGGDKGTSKARIAVDEEK 131

Query: 78  LDMINLACGVIQISIKCSCVEIFDQQ--------ESFKLDMIDLACGVIRISNNVLALRY 137
           +  I        I+ +   +  F ++         ++  ++  L   +    + +    +
Sbjct: 132 VKAIKEWPTPKSITEEKRPIAYFSEKLNGAALNYPTYDKELYALVRALETWQHYLWPKEF 191

Query: 138 SIN------KYVEGQSKLNRRHVKWVEFIETFSYVIKYKQ 150
            I+      K+++GQ KLNRRH +W+EFIETF YVIKYKQ
Sbjct: 192 VIHTDHESLKHLKGQGKLNRRHAQWMEFIETFPYVIKYKQ 231

The following BLAST results are available for this feature:
BLAST of CmoCh12G007010 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh12G007010 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A438FPM91.4e-1031.28RT_RNaseH domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_065503 P... [more]
A0A2N9G1C91.4e-1028.38Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS21244 PE=4 SV=1[more]
A0A2I0JUV81.5e-0932.86RT_RNaseH domain-containing protein (Fragment) OS=Punica granatum OX=22663 GN=CR... [more]
A0A2I0JGN55.8e-0933.09RT_RNaseH domain-containing protein OS=Punica granatum OX=22663 GN=CRG98_024200 ... [more]
A0A2N9HBQ85.8e-0931.25Integrase catalytic domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB... [more]
BLAST of CmoCh12G007010 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh12G007010.1CmoCh12G007010.1mRNA