Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGCCATTAAGATCCCGATTGCGGATGTCGAGAGAGGAGATGAAGGAGATCTTTAGAGAGCACGACATCGACGGAGATGGCGTCCTTAGCATCAGTGAGCTCACCCACGCCTTCGGCTTCTTAGGCAATATTCTTCCATACTACAAAGCTCACTATGGTCTCGCTTATGCTGACTATGATTGTAATGGCTTTATCACTGAAGATGAGCTTGATAGGCTTGTTGATTATGCCATGAGGTTTCACTCCCCCAAGTGTTGTAACCATGGTAGATCCATCGTGTAA
mRNA sequence
ATGGCGCCATTAAGATCCCGATTGCGGATGTCGAGAGAGGAGATGAAGGAGATCTTTAGAGAGCACGACATCGACGGAGATGGCGTCCTTAGCATCAGTGAGCTCACCCACGCCTTCGGCTTCTTAGGCAATATTCTTCCATACTACAAAGCTCACTATGGTCTCGCTTATGCTGACTATGATTGTAATGGCTTTATCACTGAAGATGAGCTTGATAGGCTTGTTGATTATGCCATGAGGTTTCACTCCCCCAAGTGTTGTAACCATGGTAGATCCATCGTGTAA
Coding sequence (CDS)
ATGGCGCCATTAAGATCCCGATTGCGGATGTCGAGAGAGGAGATGAAGGAGATCTTTAGAGAGCACGACATCGACGGAGATGGCGTCCTTAGCATCAGTGAGCTCACCCACGCCTTCGGCTTCTTAGGCAATATTCTTCCATACTACAAAGCTCACTATGGTCTCGCTTATGCTGACTATGATTGTAATGGCTTTATCACTGAAGATGAGCTTGATAGGCTTGTTGATTATGCCATGAGGTTTCACTCCCCCAAGTGTTGTAACCATGGTAGATCCATCGTGTAA
Protein sequence
MAPLRSRLRMSREEMKEIFREHDIDGDGVLSISELTHAFGFLGNILPYYKAHYGLAYADYDCNGFITEDELDRLVDYAMRFHSPKCCNHGRSIV
Homology
BLAST of CmoCh12G004890 vs. ExPASy Swiss-Prot
Match:
Q9C9U8 (Probable calcium-binding protein CML26 OS=Arabidopsis thaliana OX=3702 GN=CML26 PE=1 SV=1)
HSP 1 Score: 45.8 bits (107), Expect = 3.1e-04
Identity = 21/57 (36.84%), Postives = 35/57 (61.40%), Query Frame = 0
Query: 14 EMKEIFREHDIDGDGVLSISELTHAFGFLGNILPYYKAHYGLAYADYDCNGFITEDE 71
E+K++F + D +GDG +S+SEL + F +G + + L D DC+GFI ++E
Sbjct: 20 ELKKVFDKFDANGDGKISVSELGNVFKSMGTSYTEEELNRVLDEIDIDCDGFINQEE 76
BLAST of CmoCh12G004890 vs. ExPASy Swiss-Prot
Match:
Q8L3R2 (Probable calcium-binding protein CML41 OS=Arabidopsis thaliana OX=3702 GN=CML41 PE=2 SV=2)
HSP 1 Score: 45.1 bits (105), Expect = 5.2e-04
Identity = 20/54 (37.04%), Postives = 31/54 (57.41%), Query Frame = 0
Query: 11 SREEMKEIFREHDIDGDGVLSISELTHAFGFLGNILPYYKAHYGLAYADYDCNG 65
S+EE++++F D DGDG +S EL H FG +G + + A + D D +G
Sbjct: 61 SKEELRQVFSHFDSDGDGKISAFELRHYFGSVGEYISHEAAQEAINEVDTDADG 114
BLAST of CmoCh12G004890 vs. ExPASy Swiss-Prot
Match:
P05933 (Calmodulin OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=cam1 PE=1 SV=1)
HSP 1 Score: 44.7 bits (104), Expect = 6.9e-04
Identity = 22/65 (33.85%), Postives = 36/65 (55.38%), Query Frame = 0
Query: 11 SREEMKEIFREHDIDGDGVLSISELTHAFGFLGNILPYYKAHYGLAYADYDCNGFITEDE 70
+ EE++E F+ D DG+G +++ ELTH LG L + + AD D +G I +E
Sbjct: 83 NEEEVREAFKVFDKDGNGYITVEELTHVLTSLGERLSQEEVADMIREADTDGDGVINYEE 142
Query: 71 LDRLV 76
R++
Sbjct: 143 FSRVI 147
BLAST of CmoCh12G004890 vs. ExPASy TrEMBL
Match:
A0A5A7UYC0 (Putative calcium-binding protein CML10 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G00250 PE=4 SV=1)
HSP 1 Score: 119.4 bits (298), Expect = 8.1e-24
Identity = 55/87 (63.22%), Postives = 73/87 (83.91%), Query Frame = 0
Query: 1 MAPLRSRLRMSREEMKEIFREHDIDGDGVLSISELTHAFGFLGNILPYYKAHYGLAYADY 60
M+ S+L++SRE++KEIFREHDIDGDG LS+SE+ AFGF G+ILP+YKAHYG+A+AD
Sbjct: 1 MSRAASKLQLSREDIKEIFREHDIDGDGRLSLSEMVKAFGFFGSILPFYKAHYGMAHADE 60
Query: 61 DCNGFITEDELDRLVDYAMRF-HSPKC 87
+ +G+I E+ELD+LVDYA +F H KC
Sbjct: 61 NGDGYIEEEELDKLVDYAEKFQHKRKC 87
BLAST of CmoCh12G004890 vs. ExPASy TrEMBL
Match:
A0A0A0LRC1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G358870 PE=4 SV=1)
HSP 1 Score: 116.7 bits (291), Expect = 5.2e-23
Identity = 54/87 (62.07%), Postives = 72/87 (82.76%), Query Frame = 0
Query: 1 MAPLRSRLRMSREEMKEIFREHDIDGDGVLSISELTHAFGFLGNILPYYKAHYGLAYADY 60
M+ +RL++SRE++KEIFREHDIDGDG LS++E+ AFG G+ILP+YKAHYG+A+AD
Sbjct: 1 MSRAATRLQLSREDIKEIFREHDIDGDGRLSMNEMVKAFGCFGSILPFYKAHYGMAHADE 60
Query: 61 DCNGFITEDELDRLVDYAMRF-HSPKC 87
+ +GFI E+ELD+LVDYA +F H KC
Sbjct: 61 NGDGFIEEEELDKLVDYAQKFQHKRKC 87
BLAST of CmoCh12G004890 vs. ExPASy TrEMBL
Match:
A0A0A0LKX1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G359940 PE=4 SV=1)
HSP 1 Score: 115.5 bits (288), Expect = 1.2e-22
Identity = 53/76 (69.74%), Postives = 63/76 (82.89%), Query Frame = 0
Query: 6 SRLRMSREEMKEIFREHDIDGDGVLSISELTHAFGFLGNILPYYKAHYGLAYADYDCNGF 65
S+ SREEMKEIFREHDIDGDG LSISEL A GFLG+ +P+YKAHYG+AY D + +G
Sbjct: 7 SKFNFSREEMKEIFREHDIDGDGYLSISELIKAMGFLGHSIPFYKAHYGMAYCDENGDGL 66
Query: 66 ITEDELDRLVDYAMRF 82
I+EDELD+L+DYA RF
Sbjct: 67 ISEDELDKLIDYAERF 82
BLAST of CmoCh12G004890 vs. ExPASy TrEMBL
Match:
A0A5A7V2Z9 (Putative calcium-binding protein CML10 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G00190 PE=4 SV=1)
HSP 1 Score: 112.1 bits (279), Expect = 1.3e-21
Identity = 51/75 (68.00%), Postives = 62/75 (82.67%), Query Frame = 0
Query: 6 SRLRMSREEMKEIFREHDIDGDGVLSISELTHAFGFLGNILPYYKAHYGLAYADYDCNGF 65
S+ SREEMKEIFREHDIDGDG LSI EL A GFLG+ +P+YKAHYG+AY+D + +G
Sbjct: 7 SKFNFSREEMKEIFREHDIDGDGYLSIGELIKAMGFLGHSIPFYKAHYGMAYSDENGDGL 66
Query: 66 ITEDELDRLVDYAMR 81
I+EDELD+L+DYA R
Sbjct: 67 ISEDELDKLIDYAER 81
BLAST of CmoCh12G004890 vs. ExPASy TrEMBL
Match:
A0A6J1KUW2 (calmodulin-like OS=Cucurbita maxima OX=3661 GN=LOC111496626 PE=4 SV=1)
HSP 1 Score: 110.9 bits (276), Expect = 2.9e-21
Identity = 50/78 (64.10%), Postives = 64/78 (82.05%), Query Frame = 0
Query: 8 LRMSREEMKEIFREHDIDGDGVLSISELTHAFGFLGNILPYYKAHYGLAYADYDCNGFIT 67
+++SR ++KEIF EHDIDGDG LS+SELT AF F G+I+P YKAHYGLAYAD D +G I+
Sbjct: 83 MKLSRSQIKEIFMEHDIDGDGYLSVSELTKAFSFFGSIIPLYKAHYGLAYADADGDGLIS 142
Query: 68 EDELDRLVDYAMRFHSPK 86
E+EL++LVDYA R + K
Sbjct: 143 EEELEKLVDYAERTNKKK 160
BLAST of CmoCh12G004890 vs. TAIR 10
Match:
AT1G73630.1 (EF hand calcium-binding protein family )
HSP 1 Score: 45.8 bits (107), Expect = 2.2e-05
Identity = 21/57 (36.84%), Postives = 35/57 (61.40%), Query Frame = 0
Query: 14 EMKEIFREHDIDGDGVLSISELTHAFGFLGNILPYYKAHYGLAYADYDCNGFITEDE 71
E+K++F + D +GDG +S+SEL + F +G + + L D DC+GFI ++E
Sbjct: 20 ELKKVFDKFDANGDGKISVSELGNVFKSMGTSYTEEELNRVLDEIDIDCDGFINQEE 76
BLAST of CmoCh12G004890 vs. TAIR 10
Match:
AT3G50770.1 (calmodulin-like 41 )
HSP 1 Score: 45.1 bits (105), Expect = 3.7e-05
Identity = 20/54 (37.04%), Postives = 31/54 (57.41%), Query Frame = 0
Query: 11 SREEMKEIFREHDIDGDGVLSISELTHAFGFLGNILPYYKAHYGLAYADYDCNG 65
S+EE++++F D DGDG +S EL H FG +G + + A + D D +G
Sbjct: 61 SKEELRQVFSHFDSDGDGKISAFELRHYFGSVGEYISHEAAQEAINEVDTDADG 114
BLAST of CmoCh12G004890 vs. TAIR 10
Match:
AT4G14640.1 (calmodulin 8 )
HSP 1 Score: 40.4 bits (93), Expect = 9.2e-04
Identity = 22/65 (33.85%), Postives = 35/65 (53.85%), Query Frame = 0
Query: 11 SREEMKEIFREHDIDGDGVLSISELTHAFGFLGNILPYYKAHYGLAYADYDCNGFITEDE 70
+ EE+KE F+ D D +G +S SEL+H LG L + + AD D +G + DE
Sbjct: 83 AEEELKEAFKVFDKDQNGYISASELSHVMINLGEKLTDEEVEQMIKEADLDGDGQVNYDE 142
Query: 71 LDRLV 76
+++
Sbjct: 143 FVKMM 147
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Q9C9U8 | 3.1e-04 | 36.84 | Probable calcium-binding protein CML26 OS=Arabidopsis thaliana OX=3702 GN=CML26 ... | [more] |
Q8L3R2 | 5.2e-04 | 37.04 | Probable calcium-binding protein CML41 OS=Arabidopsis thaliana OX=3702 GN=CML41 ... | [more] |
P05933 | 6.9e-04 | 33.85 | Calmodulin OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=c... | [more] |
Match Name | E-value | Identity | Description | |
A0A5A7UYC0 | 8.1e-24 | 63.22 | Putative calcium-binding protein CML10 OS=Cucumis melo var. makuwa OX=1194695 GN... | [more] |
A0A0A0LRC1 | 5.2e-23 | 62.07 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G358870 PE=4 SV=1 | [more] |
A0A0A0LKX1 | 1.2e-22 | 69.74 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G359940 PE=4 SV=1 | [more] |
A0A5A7V2Z9 | 1.3e-21 | 68.00 | Putative calcium-binding protein CML10 OS=Cucumis melo var. makuwa OX=1194695 GN... | [more] |
A0A6J1KUW2 | 2.9e-21 | 64.10 | calmodulin-like OS=Cucurbita maxima OX=3661 GN=LOC111496626 PE=4 SV=1 | [more] |