CmoCh12G004890 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh12G004890
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
Descriptioncalmodulin-like
LocationCmo_Chr12: 3007448 .. 3007732 (+)
RNA-Seq ExpressionCmoCh12G004890
SyntenyCmoCh12G004890
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGCCATTAAGATCCCGATTGCGGATGTCGAGAGAGGAGATGAAGGAGATCTTTAGAGAGCACGACATCGACGGAGATGGCGTCCTTAGCATCAGTGAGCTCACCCACGCCTTCGGCTTCTTAGGCAATATTCTTCCATACTACAAAGCTCACTATGGTCTCGCTTATGCTGACTATGATTGTAATGGCTTTATCACTGAAGATGAGCTTGATAGGCTTGTTGATTATGCCATGAGGTTTCACTCCCCCAAGTGTTGTAACCATGGTAGATCCATCGTGTAA

mRNA sequence

ATGGCGCCATTAAGATCCCGATTGCGGATGTCGAGAGAGGAGATGAAGGAGATCTTTAGAGAGCACGACATCGACGGAGATGGCGTCCTTAGCATCAGTGAGCTCACCCACGCCTTCGGCTTCTTAGGCAATATTCTTCCATACTACAAAGCTCACTATGGTCTCGCTTATGCTGACTATGATTGTAATGGCTTTATCACTGAAGATGAGCTTGATAGGCTTGTTGATTATGCCATGAGGTTTCACTCCCCCAAGTGTTGTAACCATGGTAGATCCATCGTGTAA

Coding sequence (CDS)

ATGGCGCCATTAAGATCCCGATTGCGGATGTCGAGAGAGGAGATGAAGGAGATCTTTAGAGAGCACGACATCGACGGAGATGGCGTCCTTAGCATCAGTGAGCTCACCCACGCCTTCGGCTTCTTAGGCAATATTCTTCCATACTACAAAGCTCACTATGGTCTCGCTTATGCTGACTATGATTGTAATGGCTTTATCACTGAAGATGAGCTTGATAGGCTTGTTGATTATGCCATGAGGTTTCACTCCCCCAAGTGTTGTAACCATGGTAGATCCATCGTGTAA

Protein sequence

MAPLRSRLRMSREEMKEIFREHDIDGDGVLSISELTHAFGFLGNILPYYKAHYGLAYADYDCNGFITEDELDRLVDYAMRFHSPKCCNHGRSIV
Homology
BLAST of CmoCh12G004890 vs. ExPASy Swiss-Prot
Match: Q9C9U8 (Probable calcium-binding protein CML26 OS=Arabidopsis thaliana OX=3702 GN=CML26 PE=1 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 3.1e-04
Identity = 21/57 (36.84%), Postives = 35/57 (61.40%), Query Frame = 0

Query: 14 EMKEIFREHDIDGDGVLSISELTHAFGFLGNILPYYKAHYGLAYADYDCNGFITEDE 71
          E+K++F + D +GDG +S+SEL + F  +G      + +  L   D DC+GFI ++E
Sbjct: 20 ELKKVFDKFDANGDGKISVSELGNVFKSMGTSYTEEELNRVLDEIDIDCDGFINQEE 76

BLAST of CmoCh12G004890 vs. ExPASy Swiss-Prot
Match: Q8L3R2 (Probable calcium-binding protein CML41 OS=Arabidopsis thaliana OX=3702 GN=CML41 PE=2 SV=2)

HSP 1 Score: 45.1 bits (105), Expect = 5.2e-04
Identity = 20/54 (37.04%), Postives = 31/54 (57.41%), Query Frame = 0

Query: 11  SREEMKEIFREHDIDGDGVLSISELTHAFGFLGNILPYYKAHYGLAYADYDCNG 65
           S+EE++++F   D DGDG +S  EL H FG +G  + +  A   +   D D +G
Sbjct: 61  SKEELRQVFSHFDSDGDGKISAFELRHYFGSVGEYISHEAAQEAINEVDTDADG 114

BLAST of CmoCh12G004890 vs. ExPASy Swiss-Prot
Match: P05933 (Calmodulin OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=cam1 PE=1 SV=1)

HSP 1 Score: 44.7 bits (104), Expect = 6.9e-04
Identity = 22/65 (33.85%), Postives = 36/65 (55.38%), Query Frame = 0

Query: 11  SREEMKEIFREHDIDGDGVLSISELTHAFGFLGNILPYYKAHYGLAYADYDCNGFITEDE 70
           + EE++E F+  D DG+G +++ ELTH    LG  L   +    +  AD D +G I  +E
Sbjct: 83  NEEEVREAFKVFDKDGNGYITVEELTHVLTSLGERLSQEEVADMIREADTDGDGVINYEE 142

Query: 71  LDRLV 76
             R++
Sbjct: 143 FSRVI 147

BLAST of CmoCh12G004890 vs. ExPASy TrEMBL
Match: A0A5A7UYC0 (Putative calcium-binding protein CML10 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G00250 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 8.1e-24
Identity = 55/87 (63.22%), Postives = 73/87 (83.91%), Query Frame = 0

Query: 1  MAPLRSRLRMSREEMKEIFREHDIDGDGVLSISELTHAFGFLGNILPYYKAHYGLAYADY 60
          M+   S+L++SRE++KEIFREHDIDGDG LS+SE+  AFGF G+ILP+YKAHYG+A+AD 
Sbjct: 1  MSRAASKLQLSREDIKEIFREHDIDGDGRLSLSEMVKAFGFFGSILPFYKAHYGMAHADE 60

Query: 61 DCNGFITEDELDRLVDYAMRF-HSPKC 87
          + +G+I E+ELD+LVDYA +F H  KC
Sbjct: 61 NGDGYIEEEELDKLVDYAEKFQHKRKC 87

BLAST of CmoCh12G004890 vs. ExPASy TrEMBL
Match: A0A0A0LRC1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G358870 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 5.2e-23
Identity = 54/87 (62.07%), Postives = 72/87 (82.76%), Query Frame = 0

Query: 1  MAPLRSRLRMSREEMKEIFREHDIDGDGVLSISELTHAFGFLGNILPYYKAHYGLAYADY 60
          M+   +RL++SRE++KEIFREHDIDGDG LS++E+  AFG  G+ILP+YKAHYG+A+AD 
Sbjct: 1  MSRAATRLQLSREDIKEIFREHDIDGDGRLSMNEMVKAFGCFGSILPFYKAHYGMAHADE 60

Query: 61 DCNGFITEDELDRLVDYAMRF-HSPKC 87
          + +GFI E+ELD+LVDYA +F H  KC
Sbjct: 61 NGDGFIEEEELDKLVDYAQKFQHKRKC 87

BLAST of CmoCh12G004890 vs. ExPASy TrEMBL
Match: A0A0A0LKX1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G359940 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 1.2e-22
Identity = 53/76 (69.74%), Postives = 63/76 (82.89%), Query Frame = 0

Query: 6  SRLRMSREEMKEIFREHDIDGDGVLSISELTHAFGFLGNILPYYKAHYGLAYADYDCNGF 65
          S+   SREEMKEIFREHDIDGDG LSISEL  A GFLG+ +P+YKAHYG+AY D + +G 
Sbjct: 7  SKFNFSREEMKEIFREHDIDGDGYLSISELIKAMGFLGHSIPFYKAHYGMAYCDENGDGL 66

Query: 66 ITEDELDRLVDYAMRF 82
          I+EDELD+L+DYA RF
Sbjct: 67 ISEDELDKLIDYAERF 82

BLAST of CmoCh12G004890 vs. ExPASy TrEMBL
Match: A0A5A7V2Z9 (Putative calcium-binding protein CML10 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G00190 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 1.3e-21
Identity = 51/75 (68.00%), Postives = 62/75 (82.67%), Query Frame = 0

Query: 6  SRLRMSREEMKEIFREHDIDGDGVLSISELTHAFGFLGNILPYYKAHYGLAYADYDCNGF 65
          S+   SREEMKEIFREHDIDGDG LSI EL  A GFLG+ +P+YKAHYG+AY+D + +G 
Sbjct: 7  SKFNFSREEMKEIFREHDIDGDGYLSIGELIKAMGFLGHSIPFYKAHYGMAYSDENGDGL 66

Query: 66 ITEDELDRLVDYAMR 81
          I+EDELD+L+DYA R
Sbjct: 67 ISEDELDKLIDYAER 81

BLAST of CmoCh12G004890 vs. ExPASy TrEMBL
Match: A0A6J1KUW2 (calmodulin-like OS=Cucurbita maxima OX=3661 GN=LOC111496626 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 2.9e-21
Identity = 50/78 (64.10%), Postives = 64/78 (82.05%), Query Frame = 0

Query: 8   LRMSREEMKEIFREHDIDGDGVLSISELTHAFGFLGNILPYYKAHYGLAYADYDCNGFIT 67
           +++SR ++KEIF EHDIDGDG LS+SELT AF F G+I+P YKAHYGLAYAD D +G I+
Sbjct: 83  MKLSRSQIKEIFMEHDIDGDGYLSVSELTKAFSFFGSIIPLYKAHYGLAYADADGDGLIS 142

Query: 68  EDELDRLVDYAMRFHSPK 86
           E+EL++LVDYA R +  K
Sbjct: 143 EEELEKLVDYAERTNKKK 160

BLAST of CmoCh12G004890 vs. TAIR 10
Match: AT1G73630.1 (EF hand calcium-binding protein family )

HSP 1 Score: 45.8 bits (107), Expect = 2.2e-05
Identity = 21/57 (36.84%), Postives = 35/57 (61.40%), Query Frame = 0

Query: 14 EMKEIFREHDIDGDGVLSISELTHAFGFLGNILPYYKAHYGLAYADYDCNGFITEDE 71
          E+K++F + D +GDG +S+SEL + F  +G      + +  L   D DC+GFI ++E
Sbjct: 20 ELKKVFDKFDANGDGKISVSELGNVFKSMGTSYTEEELNRVLDEIDIDCDGFINQEE 76

BLAST of CmoCh12G004890 vs. TAIR 10
Match: AT3G50770.1 (calmodulin-like 41 )

HSP 1 Score: 45.1 bits (105), Expect = 3.7e-05
Identity = 20/54 (37.04%), Postives = 31/54 (57.41%), Query Frame = 0

Query: 11  SREEMKEIFREHDIDGDGVLSISELTHAFGFLGNILPYYKAHYGLAYADYDCNG 65
           S+EE++++F   D DGDG +S  EL H FG +G  + +  A   +   D D +G
Sbjct: 61  SKEELRQVFSHFDSDGDGKISAFELRHYFGSVGEYISHEAAQEAINEVDTDADG 114

BLAST of CmoCh12G004890 vs. TAIR 10
Match: AT4G14640.1 (calmodulin 8 )

HSP 1 Score: 40.4 bits (93), Expect = 9.2e-04
Identity = 22/65 (33.85%), Postives = 35/65 (53.85%), Query Frame = 0

Query: 11  SREEMKEIFREHDIDGDGVLSISELTHAFGFLGNILPYYKAHYGLAYADYDCNGFITEDE 70
           + EE+KE F+  D D +G +S SEL+H    LG  L   +    +  AD D +G +  DE
Sbjct: 83  AEEELKEAFKVFDKDQNGYISASELSHVMINLGEKLTDEEVEQMIKEADLDGDGQVNYDE 142

Query: 71  LDRLV 76
             +++
Sbjct: 143 FVKMM 147

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q9C9U83.1e-0436.84Probable calcium-binding protein CML26 OS=Arabidopsis thaliana OX=3702 GN=CML26 ... [more]
Q8L3R25.2e-0437.04Probable calcium-binding protein CML41 OS=Arabidopsis thaliana OX=3702 GN=CML41 ... [more]
P059336.9e-0433.85Calmodulin OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=c... [more]
Match NameE-valueIdentityDescription
A0A5A7UYC08.1e-2463.22Putative calcium-binding protein CML10 OS=Cucumis melo var. makuwa OX=1194695 GN... [more]
A0A0A0LRC15.2e-2362.07Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G358870 PE=4 SV=1[more]
A0A0A0LKX11.2e-2269.74Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G359940 PE=4 SV=1[more]
A0A5A7V2Z91.3e-2168.00Putative calcium-binding protein CML10 OS=Cucumis melo var. makuwa OX=1194695 GN... [more]
A0A6J1KUW22.9e-2164.10calmodulin-like OS=Cucurbita maxima OX=3661 GN=LOC111496626 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT1G73630.12.2e-0536.84EF hand calcium-binding protein family [more]
AT3G50770.13.7e-0537.04calmodulin-like 41 [more]
AT4G14640.19.2e-0433.85calmodulin 8 [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002048EF-hand domainPFAMPF00036EF-hand_1coord: 14..39
e-value: 1.0E-6
score: 27.9
IPR002048EF-hand domainPROSITEPS50222EF_HAND_2coord: 10..45
score: 13.816021
NoneNo IPR availableGENE3D1.10.238.10coord: 2..85
e-value: 2.8E-10
score: 42.4
IPR018247EF-Hand 1, calcium-binding sitePROSITEPS00018EF_HAND_1coord: 23..35
IPR018247EF-Hand 1, calcium-binding sitePROSITEPS00018EF_HAND_1coord: 59..71
IPR011992EF-hand domain pairSUPERFAMILY47473EF-handcoord: 6..73

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh12G004890.1CmoCh12G004890.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005509 calcium ion binding