CmoCh12G003930 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh12G003930
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	ribosomal RNA small subunit methyltransferase I
Location	Cmo_Chr12: 2437679 .. 2441348 (-)
RNA-Seq Expression	CmoCh12G003930
Synteny	CmoCh12G003930

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ACAATAATTTACACATAAAATAATCGATAGTTTAATAATTTCATCGATTTTGTTGGCCTTTTGCTTGGATTTGGCGGTTCTTCGGAGATGGTGAAATCTTCGGTCTTCGTTGTGTAATCTTGTACTCTTCCTTCCTCCCACCGTCGCCCCCAATTCAATTCAGTTCGGCCTGTTTCCGCCGTAGAGCGACGGAGGGAAGCTGATGTTGACGCGTAGAATTCCTTCCGTGGCAGTTTATCTCCCGCAAGCTCTGCCATGGCGTCGTGGGCTACCTCATTCAATCAACACCAGGACGCCGCTTGAATTCCACTCATTGCTCTCTTTTTGCCCTAAAACTTGTTTACTTTCCTTTTGTTCCGCTTCACAATTCTCCTCCGAAGTTGCTGAACCAACTCATCTGGATGATTCCTCGAAGCGTGTAAGATCACGAACCAATCCCTTCCTTATAACTTTTTCTATATGGCCATTGTTAATCATGCAAAACCTAGAGCTTAATTCCTGTTATTTATTTGCTTAACTCTTTCCTTGTGGCTAGAATGAACATAGAATGAACCGCAAAAGCTCAATGTGTGTTAATGGTATGTTTAATCTTTATATATATTCTTAACAGTAATGTTTTGCCTCTCCATGTTGATACTTGTATTGGATTCAACTACAAAACTTGCTATATCTGTCTCATTTTGTACTGGATTGTATACAAGTTATTGTAACTTCTTAAGTCCTTTAATGAAAATATAGATATATTCTGTCCGCTTTCTTGGTTTAGGATTTCTACGTAGTTTTGTAATGTTTGACAGGTATCCTTGTCCTTGCAGGGTCCCCTGAAACCTGGGTTATATATAGTTAGCACACCAATTGGTAATCTTGAAGATATCACCTTACGGTATGAAATTTTGATAGCAAGCCCCAACATTAATATTGTAAGATCCCATATCGGTTGGAGAGGGGAACGAAGCATTCCTTATAAGGGTGTGGAAATCTCTCCCTAGTAGACGCGTTTTAAAATCGTGAGGCTGATGACAATACGTAACAGACTAAAGTGGACAATATCTGTTAGCGGTGAGCTTAAGCTGTTATAAATGGTATTAGAGCCAGACATTGGGCAGTGTGCCAGCGAGGATGTTGGGGCCCGAAGGAAGGTGGATTGTGAGATCCCACGTCGGTTGGAAAGGGGAACGAAACATTCCTTGTAAGGGTGTGGAAACCTCTCCCTAGTAGACATGTTTTGAAATCATGAAGCTAACGACGATATGTATAGAAGGCCAAAGCGGACAAAATCTGTTACTTTCTTTTCAACGTATGTATGTATACACTGAAAGTTTGGCAACCAACACGAATATATATATATTTTTTCTTTCAAAATGATATGTACACATATAAACGCATGATTTGGAAAATGGACTTTATGTCTTGTGATATTTCTAACTGAGTCACTACCTTAAGTAGGATGTTAATTTCCATGTTTCAAGATTTTTGCATTTATATTGTTCCTTATTTCAATTGTTCAGTTCTTTTGAATAATCAGTCTCTTTATGCCCTTAAAATTCTATTATACAGTGCTCTACGTGTCTTAAAATCAGCAAACGTCATTCTTTCGGAGGATACAAGGCACTCAGGAAAGTTGCTTCAACATTTCAGTATTAAAACCCCTCTTGTAAGTTTGTTGATGCATTTGTTTGCTGATATATCAGTTTTCTTTTCGTTCTCCATTTGTTCTGATGAAGACTTTTAGATTTCAGTTGAGTTTTCACAAATTCAATGAGTCTCAAAGGGAGCAAACAGTTTTGAAGAGGTTAAAAGAGGGTGAAATTGTTGCACTAATTAGTGACGCGGGGACTCCAGGCATTAGTGATCCTGGTACTGAGTTGGTGAGCATGCTCGTTCTTCCTTAATATTTTAATGATTTAATTATGAATGGTGGTATTTATATAATTGTACCATGTGAATACAGGTAAGACAATGTGTCAATGCAAGCATACCCGTTGTTCCTATTCCTGGACCCTCTGCTGTCATTGCTGCTCTTTCTGCCTCTGGCTTGTCGACCGATGAATTTACCTTCGGTAAAATTTGTACCGGTTCTTGTACTTGTGCTGTGAGGGCACCTTTGTTTGAGATTTTTTGGCCCTTTGGCTATGGCTTCCTTCAGGCTCACAACAGTTTCTCAATAAGTAAATTTGTGCAGTTGGATTTGTTCCTAAGCATGCTGCATCTAGAAGAGAGAGGCTGATGGTTTCAGCAAATGAGGAGGCGACGCAAATATTCTATGTTCCTCCGCACAAAGTTAAGCAGTTTCTCGAGGAAACTTCATCATTATTTGGTGAATCAAGGTACTTCATATATGTCTATCTCTAATCTGTTAACTTATATGTAATAGTCCAAGCCCACTGCTAGTAGATATTGTCCTCTTTGAGCTTTCCCTTTCGGGCTTCCCCTCAAGATTTTTAAAACGCGTCTGTTAGGAAGAGGTTTCCACACCCTTATAAAGAATAATTCGTTTCCGTCTCCAACTGACGTGGGATCTCCCAATCCCACCCTCCTTCGAGGCCCAGCGTCTTCACTGGCACTCGTTCCTCTCTCCAATCGATGTGGGATCTTACATTATATTTCTTCCAATGTATCAGTGCAGTTCACCACTATCTGCTTCTATCTATATCATTCATTTACTGATGACATCTGATTTGGAATATTTGAAGGAACAGATTGTATTAAGATGCTTCGTTAATCGTGATATCTTAAAGCAATCATTTCATTTCTTGTAACAGATAGTCTAAACTTATATTATGATCCAAATTACTTTACTGAACAAGCAGACTTGTCTTCTGTTTGTAGATGGTTTCATCAATGCCAACTTGATGAGTATTTTTGTTTCTGAGCTGTTTTGCAGGCAATGCGTCATAGCTCGTGAAATGACCAAGATACACGAGGAGGTAACTTTATTCCTCACCATGTTTTTTTGTATCTTTATTTGGTAGAGTTCCCAATACTTATGCTTACTGCCGACCACTTCTTTGTTTCTTCTGCACACTGTTACTTATTTACCTTGTATGATGTCATTCTACCAATTTCCTCTGTGCTCTATTGAGTTCCTTGGTTGCAACAGTTTTGGCGGGGTACCCTGGCGGAAGCTAAAGAATACTTCTCGTTGCACCAAACGAAGGGTGAAATTACGCTGCTGATCGAAGGAAAGCTCAATTCTGAAGTTGAAACTCCATCGGAATCACAGCTGGAAAAGGAGTTGGAAGAATTGATCTCCAGTGGGCATAGGCTTTCTATGGTAATGGCTTGAATTGGACTATAGGATAAAGATAAAGATACAGAATACTTCAAGCTTTACTCTGAGATGATCTCCATGCTCTTATTATCATGTTATTGAATGGGACCGATATCAGTTGGCAACGACCAAAATGAATAGTTTGTTCAAATTCAAAGACTAAATAGGCATTTCGAATGTTTAGCAAATAAATTAAAACGAGTCTTGAAAGTTTAGAGATGAAAATAGTGGTTGAACTAATATTGTATACCTTGAATGCTAACAAACTTATTTTCTTTTTTCATGAAGGCTGTCAAATTGGTCGCTATCAAAACGTCAGCTAGTAGGAAAACTGTCTATTCAATTGCATTACGAAGATTCGGGAATCAGCTTGGAGCGGAGAACGATTCGTGCAAATAA

mRNA sequence

ACAATAATTTACACATAAAATAATCGATAGTTTAATAATTTCATCGATTTTGTTGGCCTTTTGCTTGGATTTGGCGGTTCTTCGGAGATGGTGAAATCTTCGGTCTTCGTTGTGTAATCTTGTACTCTTCCTTCCTCCCACCGTCGCCCCCAATTCAATTCAGTTCGGCCTGTTTCCGCCGTAGAGCGACGGAGGGAAGCTGATGTTGACGCGTAGAATTCCTTCCGTGGCAGTTTATCTCCCGCAAGCTCTGCCATGGCGTCGTGGGCTACCTCATTCAATCAACACCAGGACGCCGCTTGAATTCCACTCATTGCTCTCTTTTTGCCCTAAAACTTGTTTACTTTCCTTTTGTTCCGCTTCACAATTCTCCTCCGAAGTTGCTGAACCAACTCATCTGGATGATTCCTCGAAGCGTGGTCCCCTGAAACCTGGGTTATATATAGTTAGCACACCAATTGGTAATCTTGAAGATATCACCTTACGTGCTCTACGTGTCTTAAAATCAGCAAACGTCATTCTTTCGGAGGATACAAGGCACTCAGGAAAGTTGCTTCAACATTTCAGTATTAAAACCCCTCTTTTGAGTTTTCACAAATTCAATGAGTCTCAAAGGGAGCAAACAGTTTTGAAGAGGTTAAAAGAGGGTGAAATTGTTGCACTAATTAGTGACGCGGGGACTCCAGGCATTAGTGATCCTGGTACTGAGTTGGTAAGACAATGTGTCAATGCAAGCATACCCGTTGTTCCTATTCCTGGACCCTCTGCTGTCATTGCTGCTCTTTCTGCCTCTGGCTTGTCGACCGATGAATTTACCTTCGTTGGATTTGTTCCTAAGCATGCTGCATCTAGAAGAGAGAGGCTGATGGTTTCAGCAAATGAGGAGGCGACGCAAATATTCTATGTTCCTCCGCACAAAGTTAAGCAGTTTCTCGAGGAAACTTCATCATTATTTGGTGAATCAAGGCAATGCGTCATAGCTCGTGAAATGACCAAGATACACGAGGAGTTTTGGCGGGGTACCCTGGCGGAAGCTAAAGAATACTTCTCGTTGCACCAAACGAAGGGTGAAATTACGCTGCTGATCGAAGGAAAGCTCAATTCTGAAGTTGAAACTCCATCGGAATCACAGCTGGAAAAGGAGTTGGAAGAATTGATCTCCAGTGGGCATAGGCTTTCTATGGCTGTCAAATTGGTCGCTATCAAAACGTCAGCTAGTAGGAAAACTGTCTATTCAATTGCATTACGAAGATTCGGGAATCAGCTTGGAGCGGAGAACGATTCGTGCAAATAA

Coding sequence (CDS)

ATGTTGACGCGTAGAATTCCTTCCGTGGCAGTTTATCTCCCGCAAGCTCTGCCATGGCGTCGTGGGCTACCTCATTCAATCAACACCAGGACGCCGCTTGAATTCCACTCATTGCTCTCTTTTTGCCCTAAAACTTGTTTACTTTCCTTTTGTTCCGCTTCACAATTCTCCTCCGAAGTTGCTGAACCAACTCATCTGGATGATTCCTCGAAGCGTGGTCCCCTGAAACCTGGGTTATATATAGTTAGCACACCAATTGGTAATCTTGAAGATATCACCTTACGTGCTCTACGTGTCTTAAAATCAGCAAACGTCATTCTTTCGGAGGATACAAGGCACTCAGGAAAGTTGCTTCAACATTTCAGTATTAAAACCCCTCTTTTGAGTTTTCACAAATTCAATGAGTCTCAAAGGGAGCAAACAGTTTTGAAGAGGTTAAAAGAGGGTGAAATTGTTGCACTAATTAGTGACGCGGGGACTCCAGGCATTAGTGATCCTGGTACTGAGTTGGTAAGACAATGTGTCAATGCAAGCATACCCGTTGTTCCTATTCCTGGACCCTCTGCTGTCATTGCTGCTCTTTCTGCCTCTGGCTTGTCGACCGATGAATTTACCTTCGTTGGATTTGTTCCTAAGCATGCTGCATCTAGAAGAGAGAGGCTGATGGTTTCAGCAAATGAGGAGGCGACGCAAATATTCTATGTTCCTCCGCACAAAGTTAAGCAGTTTCTCGAGGAAACTTCATCATTATTTGGTGAATCAAGGCAATGCGTCATAGCTCGTGAAATGACCAAGATACACGAGGAGTTTTGGCGGGGTACCCTGGCGGAAGCTAAAGAATACTTCTCGTTGCACCAAACGAAGGGTGAAATTACGCTGCTGATCGAAGGAAAGCTCAATTCTGAAGTTGAAACTCCATCGGAATCACAGCTGGAAAAGGAGTTGGAAGAATTGATCTCCAGTGGGCATAGGCTTTCTATGGCTGTCAAATTGGTCGCTATCAAAACGTCAGCTAGTAGGAAAACTGTCTATTCAATTGCATTACGAAGATTCGGGAATCAGCTTGGAGCGGAGAACGATTCGTGCAAATAA

Protein sequence

MLTRRIPSVAVYLPQALPWRRGLPHSINTRTPLEFHSLLSFCPKTCLLSFCSASQFSSEVAEPTHLDDSSKRGPLKPGLYIVSTPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQHFSIKTPLLSFHKFNESQREQTVLKRLKEGEIVALISDAGTPGISDPGTELVRQCVNASIPVVPIPGPSAVIAALSASGLSTDEFTFVGFVPKHAASRRERLMVSANEEATQIFYVPPHKVKQFLEETSSLFGESRQCVIAREMTKIHEEFWRGTLAEAKEYFSLHQTKGEITLLIEGKLNSEVETPSESQLEKELEELISSGHRLSMAVKLVAIKTSASRKTVYSIALRRFGNQLGAENDSCK

Homology

[Close]

BLAST of CmoCh12G003930 vs. ExPASy Swiss-Prot
Match: P74038 (Ribosomal RNA small subunit methyltransferase I OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=rsmI PE=3 SV=1)

HSP 1 Score: 240.0 bits (611), Expect = 4.3e-62
Identity = 126/270 (46.67%), Postives = 175/270 (64.81%), Query Frame = 0


Query: 79  LYIVSTPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQHFSIKTPLLSFHKFNESQR 138
           LY+V+TPIGNL D+T RA+  L++ ++I +EDTRH+GKLLQHF I TP +S+H  N   R
Sbjct: 4   LYLVATPIGNLGDMTPRAVETLQTVDLIAAEDTRHTGKLLQHFQITTPQISYHDHNRHGR 63

Query: 139 EQTVLKRLKEGEIVALISDAGTPGISDPGTELVRQCVNASIPVVPIPGPSAVIAALSASG 198
            Q +L +L+ G+ +AL+SDAGTPGISDPG ELV  C  A+I V+PIPG +A+IAAL +SG
Sbjct: 64  TQELLAKLQAGQNIALVSDAGTPGISDPGQELVAACGEANIEVIPIPGATALIAALISSG 123

Query: 199 LSTDEFTFVGFVPKHAASRRERLMVSANEEATQIFYVPPHKVKQFLEETSSLFGESRQCV 258
           L+TD F F GF+      R++ L   A EE T I Y  PH++   L +  +  G+ R   
Sbjct: 124 LATDRFVFEGFLSTKNRPRQQLLQSLAQEERTIILYEAPHRLLATLTDLQTFLGQERSLT 183

Query: 259 IAREMTKIHEEFWRGTLAEAKEYFSLHQTKGEITLLIEGKLNSEVETPSESQLEKELEEL 318
           +ARE+TK HE+FWRGTL  A  YF+ +  KGE  L+I G    +  + SE  L  EL  L
Sbjct: 184 VARELTKYHEQFWRGTLQTAIAYFTENTPKGEFCLVIAGATPEDRPSFSEENLRDELRSL 243

Query: 319 ISSGHRLSMAVKLVAIKTSASRKTVYSIAL 349
           ++ G   S A + +A +T   R+ +Y ++L
Sbjct: 244 MAKGLTRSQASRQLAEETKLPRRQLYQLSL 273

[Close]

BLAST of CmoCh12G003930 vs. ExPASy Swiss-Prot
Match: P45298 (Ribosomal RNA small subunit methyltransferase I OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) OX=71421 GN=rsmI PE=3 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 2.5e-54
Identity = 120/272 (44.12%), Postives = 165/272 (60.66%), Query Frame = 0


Query: 79  LYIVSTPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQHFSIKTPLLSFHKFNESQR 138
           LYIV+TPIGNL+DIT RAL      ++I +EDTRHSG LL H+ IK P  + H  NE ++
Sbjct: 8   LYIVATPIGNLQDITQRALETFAQVDLIAAEDTRHSGLLLSHYGIKKPFFALHDHNEQEK 67

Query: 139 EQTVLKRLKEGEIVALISDAGTPGISDPGTELVRQCVNASIPVVPIPGPSAVIAALSASG 198
              ++++LK+G  +ALISDAGTP ISDPG  LVRQC  A I VVP+PG  A I AL ASG
Sbjct: 68  AHILVEKLKQGSNIALISDAGTPLISDPGFHLVRQCREAGIRVVPLPGACAAITALCASG 127

Query: 199 LSTDEFTFVGFVPKHAASRRERLMVSANEEATQIFYVPPHKVKQFLEETSSLFGESRQCV 258
           +++D F F GF+P  + +R+++L   A E+ T IFY   H++   LE+  ++ GE R  V
Sbjct: 128 IASDRFCFEGFLPAKSKARKDKLENIAEEDRTLIFYESTHRILDTLEDMQAVLGEERYIV 187

Query: 259 IAREMTKIHEEFWRGTLAEAKEYF--SLHQTKGEITLLIEGKLNSEVETPSESQLEKELE 318
           +AREMTK  E     T+   +E+     ++TKGE+ L++EGK  S+       Q  K L 
Sbjct: 188 LAREMTKTWETITGNTIKNLREWLLEDPNRTKGEMVLIVEGKPKSDNNDEISPQAVKAL- 247

Query: 319 ELISSGHRLSMAVKLVAIKTSASRKTVYSIAL 349
           ELI+    L  A  +VA      +  +Y   L
Sbjct: 248 ELIAEELPLKKAAAIVAELYGYKKNALYQFGL 278

[Close]

BLAST of CmoCh12G003930 vs. ExPASy Swiss-Prot
Match: Q9KGL2 (Ribosomal RNA small subunit methyltransferase I OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) OX=272558 GN=rsmI PE=3 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 4.3e-54
Identity = 121/276 (43.84%), Postives = 167/276 (60.51%), Query Frame = 0


Query: 76  KPGLYIVSTPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQHFSIKTPLLSFHKFNE 135
           K  LY+V+TPIGNLED+T RA+R LK A+ I +EDTR + KLL HF I T L+S+H+ N+
Sbjct: 13  KGTLYLVATPIGNLEDVTFRAIRTLKEADQIAAEDTRQTKKLLNHFDIATKLVSYHEHNK 72

Query: 136 SQREQTVLKRLKEGEIVALISDAGTPGISDPGTELVRQCVNASIPVVPIPGPSAVIAALS 195
               + ++  L EG  +AL+SDAG P ISDPG ELV   +   I V+PIPG +A + AL 
Sbjct: 73  ETMGKRLIDDLIEGRTIALVSDAGMPAISDPGYELVVSAIKEGIAVIPIPGANAAVTALI 132

Query: 196 ASGLSTDEFTFVGFVPKHAASRRERLMVSANEEATQIFYVPPHKVKQFLEETSSLFGESR 255
           ASGL T+ F F+GF+P+    RR+ L  +   +AT IFY  PH++K  L++   + G +R
Sbjct: 133 ASGLPTESFQFIGFLPRQKKQRRQALEETKPTKATLIFYESPHRLKDTLDDMLLILG-NR 192

Query: 256 QCVIAREMTKIHEEFWRGTLAEAKEYFSLHQTKGEITLLIEGKLNSEVETPSESQLE--- 315
              I RE+TK +EEF RGTL EA  +      KGE  L++EG  N E   P E   E   
Sbjct: 193 HVSICRELTKTYEEFLRGTLEEAVHWAREATIKGEFCLIVEG--NGEKVEPEEVWWESLS 252

Query: 316 --KELEELISSGHRLSMAVKLVAIKTSASRKTVYSI 347
             + +E  I+ G R   A+K VA      ++ +Y+I
Sbjct: 253 PVQHVEHYIALGFRSKEAIKQVATDRGVPKRDIYNI 285

[Close]

BLAST of CmoCh12G003930 vs. ExPASy Swiss-Prot
Match: Q9CN04 (Ribosomal RNA small subunit methyltransferase I OS=Pasteurella multocida (strain Pm70) OX=272843 GN=rsmI PE=3 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 3.6e-53
Identity = 118/275 (42.91%), Postives = 165/275 (60.00%), Query Frame = 0


Query: 79  LYIVSTPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQHFSIKTPLLSFHKFNESQR 138
           LYIV+TPIGNL+DIT RAL + +  ++I +EDTRHSG LL H+ IK P  + H  NE Q+
Sbjct: 8   LYIVATPIGNLQDITQRALAIFEQVDLIAAEDTRHSGLLLSHYGIKKPFFALHDHNEQQK 67

Query: 139 EQTVLKRLKEGEIVALISDAGTPGISDPGTELVRQCVNASIPVVPIPGPSAVIAALSASG 198
              ++++L++G+ +ALISDAGTP ISDPG  LVRQC  A I VVPIPG  A + AL ASG
Sbjct: 68  AHLLVEKLQQGQHIALISDAGTPLISDPGFHLVRQCRQAGIKVVPIPGACAAVTALCASG 127

Query: 199 LSTDEFTFVGFVPKHAASRRERLMVSANEEATQIFYVPPHKVKQFLEETSSLFGESRQCV 258
           +++D F F GF+P  + +R ++L   A EE T IFY   H++   L +     G  R  V
Sbjct: 128 IASDRFCFEGFLPAKSKARCDKLQNLAEEERTLIFYESTHRILDTLADIEKTLGAERYVV 187

Query: 259 IAREMTKIHEEFWRGTLAEAKEYF--SLHQTKGEITLLIEGKLNSEVETPSESQLEKELE 318
           +ARE+TK  E      +A  +++     ++TKGE+ L+IEGK+  E +  +   L  +  
Sbjct: 188 LAREITKTWETIVGDNVANLRQWLGEDPNRTKGEMVLIIEGKVKQETDEINPQAL--KAL 247

Query: 319 ELISSGHRLSMAVKLVAIKTSASRKTVYSIALRRF 352
           ELIS    L  A  +VA      +  +Y   L  F
Sbjct: 248 ELISQSLPLKKAAAIVAEIYGYKKNALYQYGLEHF 280

[Close]

BLAST of CmoCh12G003930 vs. ExPASy Swiss-Prot
Match: P67088 (Ribosomal RNA small subunit methyltransferase I OS=Escherichia coli O157:H7 OX=83334 GN=rsmI PE=3 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 2.0e-51
Identity = 118/276 (42.75%), Postives = 164/276 (59.42%), Query Frame = 0


Query: 79  LYIVSTPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQHFSIKTPLLSFHKFNESQR 138
           LYIV TPIGNL DIT RAL VL++ ++I +EDTRH+G LLQHF I   L + H  NE Q+
Sbjct: 14  LYIVPTPIGNLADITQRALEVLQAVDLIAAEDTRHTGLLLQHFGINARLFALHDHNEQQK 73

Query: 139 EQTVLKRLKEGEIVALISDAGTPGISDPGTELVRQCVNASIPVVPIPGPSAVIAALSASG 198
            +T+L +L+EG+ +AL+SDAGTP I+DPG  LVR C  A I VVP+PGP A I ALSA+G
Sbjct: 74  AETLLAKLQEGQNIALVSDAGTPLINDPGYHLVRTCREAGIRVVPLPGPCAAITALSAAG 133

Query: 199 LSTDEFTFVGFVPKHAASRRERLMVSANEEATQIFYVPPHKVKQFLEETSSLFGESRQCV 258
           L +D F + GF+P  +  RR+ L     E  T IFY   H++   LE+  ++ GESR  V
Sbjct: 134 LPSDRFCYEGFLPAKSKGRRDALKAIEAEPRTLIFYESTHRLLDSLEDIVAVLGESRYVV 193

Query: 259 IAREMTKIHEEFWRGTLAEAKEYF--SLHQTKGEITLLIEGKLNSEVETPSESQLEKELE 318
           +ARE+TK  E      + E   +     ++ KGE+ L++EG    E + P+++       
Sbjct: 194 LARELTKTWETIHGAPVGELLAWVKEDENRRKGEMVLIVEGHKAQEEDLPADA---LRTL 253

Query: 319 ELISSGHRLSMAVKLVAIKTSASRKTVYSIALRRFG 353
            L+ +   L  A  L A      +  +Y  AL + G
Sbjct: 254 ALLQAELPLKKAAALAAEIHGVKKNALYKYALEQQG 286

[Close]

BLAST of CmoCh12G003930 vs. ExPASy TrEMBL
Match: A0A6J1GK22 (uncharacterized protein LOC111454620 OS=Cucurbita moschata OX=3662 GN=LOC111454620 PE=3 SV=1)

HSP 1 Score: 706.8 bits (1823), Expect = 4.6e-200
Identity = 363/363 (100.00%), Postives = 363/363 (100.00%), Query Frame = 0


Query: 1   MLTRRIPSVAVYLPQALPWRRGLPHSINTRTPLEFHSLLSFCPKTCLLSFCSASQFSSEV 60
           MLTRRIPSVAVYLPQALPWRRGLPHSINTRTPLEFHSLLSFCPKTCLLSFCSASQFSSEV
Sbjct: 1   MLTRRIPSVAVYLPQALPWRRGLPHSINTRTPLEFHSLLSFCPKTCLLSFCSASQFSSEV 60

Query: 61  AEPTHLDDSSKRGPLKPGLYIVSTPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQH 120
           AEPTHLDDSSKRGPLKPGLYIVSTPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQH
Sbjct: 61  AEPTHLDDSSKRGPLKPGLYIVSTPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQH 120

Query: 121 FSIKTPLLSFHKFNESQREQTVLKRLKEGEIVALISDAGTPGISDPGTELVRQCVNASIP 180
           FSIKTPLLSFHKFNESQREQTVLKRLKEGEIVALISDAGTPGISDPGTELVRQCVNASIP
Sbjct: 121 FSIKTPLLSFHKFNESQREQTVLKRLKEGEIVALISDAGTPGISDPGTELVRQCVNASIP 180

Query: 181 VVPIPGPSAVIAALSASGLSTDEFTFVGFVPKHAASRRERLMVSANEEATQIFYVPPHKV 240
           VVPIPGPSAVIAALSASGLSTDEFTFVGFVPKHAASRRERLMVSANEEATQIFYVPPHKV
Sbjct: 181 VVPIPGPSAVIAALSASGLSTDEFTFVGFVPKHAASRRERLMVSANEEATQIFYVPPHKV 240

Query: 241 KQFLEETSSLFGESRQCVIAREMTKIHEEFWRGTLAEAKEYFSLHQTKGEITLLIEGKLN 300
           KQFLEETSSLFGESRQCVIAREMTKIHEEFWRGTLAEAKEYFSLHQTKGEITLLIEGKLN
Sbjct: 241 KQFLEETSSLFGESRQCVIAREMTKIHEEFWRGTLAEAKEYFSLHQTKGEITLLIEGKLN 300

Query: 301 SEVETPSESQLEKELEELISSGHRLSMAVKLVAIKTSASRKTVYSIALRRFGNQLGAEND 360
           SEVETPSESQLEKELEELISSGHRLSMAVKLVAIKTSASRKTVYSIALRRFGNQLGAEND
Sbjct: 301 SEVETPSESQLEKELEELISSGHRLSMAVKLVAIKTSASRKTVYSIALRRFGNQLGAEND 360

Query: 361 SCK 364
           SCK
Sbjct: 361 SCK 363

[Close]

BLAST of CmoCh12G003930 vs. ExPASy TrEMBL
Match: A0A6J1KTF7 (uncharacterized protein LOC111496252 OS=Cucurbita maxima OX=3661 GN=LOC111496252 PE=3 SV=1)

HSP 1 Score: 689.1 bits (1777), Expect = 9.9e-195
Identity = 354/363 (97.52%), Postives = 358/363 (98.62%), Query Frame = 0


Query: 1   MLTRRIPSVAVYLPQALPWRRGLPHSINTRTPLEFHSLLSFCPKTCLLSFCSASQFSSEV 60
           MLTRRIPSVAVYLPQALPWRRG PHSINTRTPLEFHSLLSFCPKTCLLSFCSASQFSSEV
Sbjct: 1   MLTRRIPSVAVYLPQALPWRRGPPHSINTRTPLEFHSLLSFCPKTCLLSFCSASQFSSEV 60

Query: 61  AEPTHLDDSSKRGPLKPGLYIVSTPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQH 120
           AEPTH+DDSSKRG LKPGLYIVSTPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQH
Sbjct: 61  AEPTHMDDSSKRGSLKPGLYIVSTPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQH 120

Query: 121 FSIKTPLLSFHKFNESQREQTVLKRLKEGEIVALISDAGTPGISDPGTELVRQCVNASIP 180
           FSIKTPLLSFHKFNESQREQTVLKRLKEGEIVALISDAGTPGISDPGTELVR CVNASIP
Sbjct: 121 FSIKTPLLSFHKFNESQREQTVLKRLKEGEIVALISDAGTPGISDPGTELVRLCVNASIP 180

Query: 181 VVPIPGPSAVIAALSASGLSTDEFTFVGFVPKHAASRRERLMVSANEEATQIFYVPPHKV 240
           VVPIPGPSAVIAALSASGLST+EFTFVGFVPKHAASRR+RLMVSANEEATQIFYVPPHKV
Sbjct: 181 VVPIPGPSAVIAALSASGLSTNEFTFVGFVPKHAASRRKRLMVSANEEATQIFYVPPHKV 240

Query: 241 KQFLEETSSLFGESRQCVIAREMTKIHEEFWRGTLAEAKEYFSLHQTKGEITLLIEGKLN 300
           KQFLEETSSLFGESR+CVIAREMTKIHEEFWRGTLAEAKEYFSLHQTKGEITLLIEGKLN
Sbjct: 241 KQFLEETSSLFGESRKCVIAREMTKIHEEFWRGTLAEAKEYFSLHQTKGEITLLIEGKLN 300

Query: 301 SEVETPSESQLEKELEELISSGHRLSMAVKLVAIKTSASRKTVYSIALRRFGNQLGAEND 360
           SEVETPSESQLE ELEELISSGHRLSMAVKLVAIKTSASRKTVYSIALRRFGNQLG END
Sbjct: 301 SEVETPSESQLENELEELISSGHRLSMAVKLVAIKTSASRKTVYSIALRRFGNQLGTEND 360

Query: 361 SCK 364
           SCK
Sbjct: 361 SCK 363

[Close]

BLAST of CmoCh12G003930 vs. ExPASy TrEMBL
Match: A0A0A0LRJ7 (TP_methylase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G362440 PE=3 SV=1)

HSP 1 Score: 623.6 bits (1607), Expect = 5.1e-175
Identity = 321/365 (87.95%), Postives = 339/365 (92.88%), Query Frame = 0


Query: 1   MLTRRIPSVAVYLPQALPWRRGLPH--SINTRTPLEFHSLLSFCPKTCLLSFCSASQFSS 60
           ML RRIPSVAVYLPQALPWRR  PH  SIN  T LEFHSLL+FCPKT L+S CSASQ + 
Sbjct: 1   MLARRIPSVAVYLPQALPWRRRPPHSYSINYGTALEFHSLLAFCPKTLLVSLCSASQLTY 60

Query: 61  EVAEPTHLDDSSKRGPLKPGLYIVSTPIGNLEDITLRALRVLKSANVILSEDTRHSGKLL 120
           E  EP H ++SSKRG LKPGLY+V TPIGNLEDITLRALRVLKSA+VILSEDTRHSGKLL
Sbjct: 61  EAVEPIHAEESSKRGSLKPGLYLVGTPIGNLEDITLRALRVLKSAHVILSEDTRHSGKLL 120

Query: 121 QHFSIKTPLLSFHKFNESQREQTVLKRLKEGEIVALISDAGTPGISDPGTELVRQCVNAS 180
           QHFSIKTPLLSFHKFNESQREQTVLKRLK+GEIVALISDAGTPGISDPGTELVR CVN +
Sbjct: 121 QHFSIKTPLLSFHKFNESQREQTVLKRLKQGEIVALISDAGTPGISDPGTELVRLCVNEN 180

Query: 181 IPVVPIPGPSAVIAALSASGLSTDEFTFVGFVPKHAASRRERLMVSANEEATQIFYVPPH 240
           IPVVP+PGPSAV+AA+SASGLSTDEFTFVGF+PKHAASRRERLMVSANEEATQIFYVPPH
Sbjct: 181 IPVVPVPGPSAVVAAISASGLSTDEFTFVGFLPKHAASRRERLMVSANEEATQIFYVPPH 240

Query: 241 KVKQFLEETSSLFGESRQCVIAREMTKIHEEFWRGTLAEAKEYFSLHQTKGEITLLIEGK 300
           K+KQFLEETS LFGESR+CVIAREMTKIHEEFWRGTLAEAKE+FSL+QTKGEITLLIEGK
Sbjct: 241 KLKQFLEETSQLFGESRRCVIAREMTKIHEEFWRGTLAEAKEFFSLNQTKGEITLLIEGK 300

Query: 301 LNSEVETPSESQLEKELEELISSGHRLSMAVKLVAIKTSASRKTVYSIALRRFGNQLGAE 360
           L  EVETPSESQLEKELEELIS+GHRLSMAVKLVA KTS SRKTVYSIALRRFGNQLG E
Sbjct: 301 LCPEVETPSESQLEKELEELISTGHRLSMAVKLVASKTSTSRKTVYSIALRRFGNQLGVE 360

Query: 361 NDSCK 364
           NDSCK
Sbjct: 361 NDSCK 365

[Close]

BLAST of CmoCh12G003930 vs. ExPASy TrEMBL
Match: A0A1S3BBU6 (ribosomal RNA small subunit methyltransferase I OS=Cucumis melo OX=3656 GN=LOC103488001 PE=3 SV=1)

HSP 1 Score: 623.2 bits (1606), Expect = 6.7e-175
Identity = 318/365 (87.12%), Postives = 342/365 (93.70%), Query Frame = 0


Query: 1   MLTRRIPSVAVYLPQALPWRRGLP--HSINTRTPLEFHSLLSFCPKTCLLSFCSASQFSS 60
           ML RR+PSVAVYLPQALPWRR  P  HSIN+RT L FHSLL+FCPKT L+S CSASQ ++
Sbjct: 1   MLARRMPSVAVYLPQALPWRRRPPHSHSINSRTALVFHSLLAFCPKTILVSLCSASQLAT 60

Query: 61  EVAEPTHLDDSSKRGPLKPGLYIVSTPIGNLEDITLRALRVLKSANVILSEDTRHSGKLL 120
           E  EP H ++ SKRGPLKPGLY+V TPIGNLEDITLRALRVLKSA+VILSEDTRHSGKLL
Sbjct: 61  EAVEPIHAEEFSKRGPLKPGLYLVGTPIGNLEDITLRALRVLKSAHVILSEDTRHSGKLL 120

Query: 121 QHFSIKTPLLSFHKFNESQREQTVLKRLKEGEIVALISDAGTPGISDPGTELVRQCVNAS 180
           QHFSIKTPLLSFHKFNESQREQTVLKRLK+GEIVALISDAGTPGISDPGTELVR CVN +
Sbjct: 121 QHFSIKTPLLSFHKFNESQREQTVLKRLKQGEIVALISDAGTPGISDPGTELVRLCVNEN 180

Query: 181 IPVVPIPGPSAVIAALSASGLSTDEFTFVGFVPKHAASRRERLMVSANEEATQIFYVPPH 240
           IPVVP+PGPSAV+AA+SASGLSTDEFTFVGF+PKHAA+RRERLMVSANEEATQIFYVPPH
Sbjct: 181 IPVVPVPGPSAVVAAISASGLSTDEFTFVGFLPKHAATRRERLMVSANEEATQIFYVPPH 240

Query: 241 KVKQFLEETSSLFGESRQCVIAREMTKIHEEFWRGTLAEAKEYFSLHQTKGEITLLIEGK 300
           K+KQFLEETS LFGESR+CVIAREMTKIHEEFWRGTLAEAKE+FSL+ TKGEITLLIEGK
Sbjct: 241 KLKQFLEETSQLFGESRRCVIAREMTKIHEEFWRGTLAEAKEFFSLNPTKGEITLLIEGK 300

Query: 301 LNSEVETPSESQLEKELEELISSGHRLSMAVKLVAIKTSASRKTVYSIALRRFGNQLGAE 360
           L+ EVETPSESQLEKELEELIS+GHRLSMAVKLVA KTSASRKTVYSIALRRFGNQLG E
Sbjct: 301 LSPEVETPSESQLEKELEELISTGHRLSMAVKLVASKTSASRKTVYSIALRRFGNQLGVE 360

Query: 361 NDSCK 364
           N+SCK
Sbjct: 361 NNSCK 365

[Close]

BLAST of CmoCh12G003930 vs. ExPASy TrEMBL
Match: A0A6J1CS92 (uncharacterized protein LOC111014109 OS=Momordica charantia OX=3673 GN=LOC111014109 PE=3 SV=1)

HSP 1 Score: 603.2 bits (1554), Expect = 7.1e-169
Identity = 307/363 (84.57%), Postives = 335/363 (92.29%), Query Frame = 0


Query: 1   MLTRRIPSVAVYLPQALPWRRGLPHSINTRTPLEFHSLLSFCPKTCLLSFCSASQFSSEV 60
           ML RRIPS+AV+LP+ +PWRRG  H IN RT L+ H   SFCPKTCL+S CSASQ SSEV
Sbjct: 1   MLARRIPSMAVHLPEVVPWRRGPSHCINARTALDSH---SFCPKTCLVSLCSASQLSSEV 60

Query: 61  AEPTHLDDSSKRGPLKPGLYIVSTPIGNLEDITLRALRVLKSANVILSEDTRHSGKLLQH 120
           A+    ++SSKRGPLKPGLY+V TPIGNLEDITLRA+RVLKSA+VILSEDTRHSGKLL H
Sbjct: 61  ADSVQAEESSKRGPLKPGLYLVGTPIGNLEDITLRAIRVLKSAHVILSEDTRHSGKLLHH 120

Query: 121 FSIKTPLLSFHKFNESQREQTVLKRLKEGEIVALISDAGTPGISDPGTELVRQCVNASIP 180
           F+I+TPLLSFHKFNESQREQ+VLKRLK+GEIVALISDAGTPGISDPG+ELV+ CVN  IP
Sbjct: 121 FNIRTPLLSFHKFNESQREQSVLKRLKQGEIVALISDAGTPGISDPGSELVKLCVNEDIP 180

Query: 181 VVPIPGPSAVIAALSASGLSTDEFTFVGFVPKHAASRRERLMVSANEEATQIFYVPPHKV 240
           VVPIPGPSAV+AALSASGLSTDEFTFVGFVPKH+ASRRERL VSANEEATQIFYVPPHK+
Sbjct: 181 VVPIPGPSAVVAALSASGLSTDEFTFVGFVPKHSASRRERLTVSANEEATQIFYVPPHKL 240

Query: 241 KQFLEETSSLFGESRQCVIAREMTKIHEEFWRGTLAEAKEYFSLHQTKGEITLLIEGKLN 300
           KQFLEET SLFGESR+CVIAREMTKIHEEFWRGTLAEAKE+FSLHQTKGEITLLIEGKL+
Sbjct: 241 KQFLEETLSLFGESRRCVIAREMTKIHEEFWRGTLAEAKEFFSLHQTKGEITLLIEGKLD 300

Query: 301 SEVETPSESQLEKELEELISSGHRLSMAVKLVAIKTSASRKTVYSIALRRFGNQLGAEND 360
           S VE PSE QLEKEL+ELISSGHRLSMAVKLVA KTSASRKTVYSIALR+FGNQLGA++D
Sbjct: 301 SGVEAPSELQLEKELQELISSGHRLSMAVKLVASKTSASRKTVYSIALRKFGNQLGADSD 360

Query: 361 SCK 364
           SCK
Sbjct: 361 SCK 360

[Close]

BLAST of CmoCh12G003930 vs. TAIR 10
Match: AT1G45110.1 (Tetrapyrrole (Corrin/Porphyrin) Methylases )

HSP 1 Score: 436.0 bits (1120), Expect = 2.9e-122
Identity = 219/316 (69.30%), Postives = 264/316 (83.54%), Query Frame = 0


Query: 45  TCLLSFCSASQFSSEVAEPTHLDDSSKRGPLKPGLYIVSTPIGNLEDITLRALRVLKSAN 104
           T  +SFCS+S+F+  VA+     D SKRGPLKPGLY+V TPIGNLEDITLRA+RVL+SA+
Sbjct: 28  TAAISFCSSSEFADSVAK-----DDSKRGPLKPGLYLVGTPIGNLEDITLRAIRVLRSAD 87

Query: 105 VILSEDTRHSGKLLQHFSIKTPLLSFHKFNESQREQTVLKRLKEGEIVALISDAGTPGIS 164
           VILSEDTRHSGKLLQ+++IK  LLS+HKFNE+QREQ VL RLK+GEIVALISDAGTPGIS
Sbjct: 88  VILSEDTRHSGKLLQYYNIKAQLLSYHKFNEAQREQAVLTRLKQGEIVALISDAGTPGIS 147

Query: 165 DPGTELVRQCVNASIPVVPIPGPSAVIAALSASGLSTDEFTFVGFVPKHAASRRERLMVS 224
           DPGT+L + C   +I V+PIPG  AV+AALSASGL TDEFTFVGF+PKH+ +R+ERL+VS
Sbjct: 148 DPGTQLAKMCAKENIDVIPIPGACAVVAALSASGLETDEFTFVGFLPKHSGTRKERLIVS 207

Query: 225 ANEEATQIFYVPPHKVKQFLEETSSLFGESRQCVIAREMTKIHEEFWRGTLAEAKEYFSL 284
           +NE  TQIFYVPPHK+ QFLEET+  FGESRQCVIARE+TK+HEEFWRG++AEAK+ F +
Sbjct: 208 SNETRTQIFYVPPHKLSQFLEETTPYFGESRQCVIAREITKLHEEFWRGSIAEAKQEFLI 267

Query: 285 HQTKGEITLLIEGKLNSEVETPSESQLEKELEELISSGHRLSMAVKLVAIKTSASRKTVY 344
            Q KGEITLLIEGK  ++ E P+ESQLE+EL  LIS GH LS AVK VA +TS  +K VY
Sbjct: 268 RQPKGEITLLIEGKEETKAENPTESQLEEELRGLISDGHSLSTAVKTVAERTSMRKKEVY 327

Query: 345 SIALRRFGNQLGAEND 361
           S+AL++FG Q+  E +
Sbjct: 328 SLALKKFGKQIRVEEE 338

The following BLAST results are available for this feature:

BLAST of CmoCh12G003930 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P74038	4.3e-62	46.67	Ribosomal RNA small subunit methyltransferase I OS=Synechocystis sp. (strain PCC...	[more]
P45298	2.5e-54	44.12	Ribosomal RNA small subunit methyltransferase I OS=Haemophilus influenzae (strai...	[more]
Q9KGL2	4.3e-54	43.84	Ribosomal RNA small subunit methyltransferase I OS=Bacillus halodurans (strain A...	[more]
Q9CN04	3.6e-53	42.91	Ribosomal RNA small subunit methyltransferase I OS=Pasteurella multocida (strain...	[more]
P67088	2.0e-51	42.75	Ribosomal RNA small subunit methyltransferase I OS=Escherichia coli O157:H7 OX=8...	[more]

BLAST of CmoCh12G003930 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GK22	4.6e-200	100.00	uncharacterized protein LOC111454620 OS=Cucurbita moschata OX=3662 GN=LOC1114546...	[more]
A0A6J1KTF7	9.9e-195	97.52	uncharacterized protein LOC111496252 OS=Cucurbita maxima OX=3661 GN=LOC111496252...	[more]
A0A0A0LRJ7	5.1e-175	87.95	TP_methylase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G36244...	[more]
A0A1S3BBU6	6.7e-175	87.12	ribosomal RNA small subunit methyltransferase I OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A6J1CS92	7.1e-169	84.57	uncharacterized protein LOC111014109 OS=Momordica charantia OX=3673 GN=LOC111014...	[more]

BLAST of CmoCh12G003930 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G45110.1	2.9e-122	69.30	Tetrapyrrole (Corrin/Porphyrin) Methylases	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014777	Tetrapyrrole methylase, subdomain 1	GENE3D	3.40.1010.10		coord: 66..185 e-value: 4.7E-42 score: 144.6
IPR014776	Tetrapyrrole methylase, subdomain 2	GENE3D	3.30.950.10		coord: 186..301 e-value: 2.4E-38 score: 132.6
IPR000878	Tetrapyrrole methylase	PFAM	PF00590	TP_methylase	coord: 79..278 e-value: 6.8E-29 score: 101.3
IPR008189	rRNA small subunit methyltransferase I	TIGRFAM	TIGR00096	TIGR00096	coord: 79..348 e-value: 2.9E-81 score: 270.8
IPR008189	rRNA small subunit methyltransferase I	PANTHER	PTHR46111	RIBOSOMAL RNA SMALL SUBUNIT METHYLTRANSFERASE I	coord: 64..359
IPR008189	rRNA small subunit methyltransferase I	HAMAP	MF_01877	16SrRNA_methyltr_I	coord: 78..297 score: 36.238091
IPR008189	rRNA small subunit methyltransferase I	CDD	cd11648	RsmI	coord: 80..296 e-value: 5.22747E-127 score: 361.701
None	No IPR available	PANTHER	PTHR46111:SF1	RIBOSOMAL RNA SMALL SUBUNIT METHYLTRANSFERASE I	coord: 64..359
IPR018063	SAM-dependent methyltransferase RsmI, conserved site	PROSITE	PS01296	RSMI	coord: 156..167
IPR035996	Tetrapyrrole methylase superfamily	SUPERFAMILY	53790	Tetrapyrrole methylase	coord: 77..295

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh12G003930.1	CmoCh12G003930.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032259	methylation
biological_process	GO:0006364	rRNA processing
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0008168	methyltransferase activity