CmoCh12G001040 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh12G001040
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Mitochondrial transcription termination factor family protein
Location	Cmo_Chr12: 565766 .. 571719 (-)
RNA-Seq Expression	CmoCh12G001040
Synteny	CmoCh12G001040

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCAATTTTCTGTTCAAAGTTCCTCTGCGTCTCTTTGCTCAAGATCTCCAGAAGTTTGCAGGGAACGACACCACAATTTCCCGCAAATTCCTCTCTTCTCTGTCTGAAATCTCTCAATCAACCAACAATCGGACGGTCGACTACCTTGTTCATACCCTTGGATTCTCCAAGGACTCAGCTCTCGCCGCTGCGAAGCGAATCCATCTCAAAACTACTGCAAATCCCGACTCTGTCATTGCTCTCTTCAAGGCCTATGGATTCACACTGTCTGATACTGCCAGCATCTTTTGCAGACATCCTAATCTCCTCCTTGCCGATCCGGACACAATACTCAAACCTAAGTTTGAGTTTCTCTCTCGAAATGGTTTCACTGGTCATGTTCTCGTCGACGTAATCTCTAGGGATCCGTCAATTCTTAGAAGGAGTTTGAAGAAGCAGATTGTTCCGTGTATTGATTTTCTCAGAAATTTTTTTGGCTCTACTGATGGTGTAGTCTCGCTCTTTTCTGCTAGACGTGGGACTTGGGTTTTGCGAAAGTTTACAGAATCTGTGGCTCCCAATATCGAACTATTGAGAGCTAATGGCGTGCCTGATTCGAACATCGCGAAGATTTTTTGGATGCGCCCGAGGACACTAGCAAGGAATGCGGAAGAGTTCAGTGACATCGTCGAGAAGACGAAGGAAGCTGGTTTTAATCCTTCGAGCCCGATGTTTACTTATGGGCTGTGTACGTTTTTAGGGATGAAAAAGGACAAATGGTTATCGAAACTGCATATTTTTACAAGTTTTGGGTGGTCAGAGGAGCAGTTTCAATCTCTATTTCTCAAGCAGCCCACGATTATGAATTCGTCTGAAGAGCAAATAAAGAAGGCCTTGGATTTCTTGATGAACAAATTGGACTGGACGCACGAAGAAATTTCCAAGTACCCAAATGTACTTTATCTTAGTTTTGAAAAAAGGGTGGTTCCGAGGTCGTCTATTCTTCAGCACCTGATGTCAAAAGGTTTTATCAAGAAGACAAATTTTGGCAGAGCATTTATGCTTAGCGAGGATAAGTTTTTGGTCAAGTTTGTGATGCAGTATCTTTCTGAGGATCCACATCTACTTGAGATGTACCAGAAGAAGATGGCAGTTTTATAAACTCTTGGAGTGCAATTCAGGTAATTCGTCTCTTCTGTAAAAACTGTGCACTTCACTTGTGAGAAGATTGTAGGTTTGTGTGTAAAACTTATGAAATTTCACAGACCTTAGAACTGTTATTCACTGACAGAAGACCCATGAAGGTTATAACATGTAGATCTTTTAGGAATGTTCCCACTTGCACGAGACTGCCTGCTAAGAATCAAGCAACTATTATGATGCTTAACTTTAAAAATTGATATACTTAAAATTATCCCCATAACATAGATGTCCCTATAAGAATTAACTACAATTTAGTTCATACTGTAATTGATTGACTTTTGGTGGGTCATTGGAGCTTCCGGTAGATTACCCTGGCCTATTCTATTTGCATGTTTACAGTACGAGATCCAATAACCTAACGAAAATCATTTAACTATAAAAAAAAAAAAAAAAAAAAAAAAGTGAAATCCCACATCAATTGGAAGAGGAACAAGTGCCAGCTAGGACGCTGGCTCCGAAGGGGATTGGATTGTGAGATCTAACATCGGTTGGAGATGGAAATGAAACATTCTTTATAAAGGTGTGGAAAACTCTCCCTAGCACACACGTTTTAAAAACCTTGAGGGGAAGCTCGAAAGGGAAAACCCAAAGATGATAATATCTGCTAGCGGTGGGCTTGGGTTGTTACAAAAAACCTCGAGGAAAATTGTAACATCTCGATGCTTTAGTTTAGGAGATGTGCTATCCCCCTGCTCTTTTTGTGGTTGCTGCTCTGATTGATCCAGTAGGCTGCTCATTTATGGTCAACATGCTTGTGATATTTGGAAAAATTCTATATTTGGAAGTGCACATTAAAGGTGAACCATATCTTTAGTATGAAACTATCTGGTTTGTAGAGGTGAAGACTTTGCAGAAGATAGTTTAGATCTTTGAGGCTTAAAAGTTAAAACCAAACTTTCTAAATGGTAAATGTCGGGAGTAAATTGGTGTAGAAGGACTTTTGAGACACAGACTCAAGTCTGGATTTTGTAATGGATCTTTTCCAATCAAATACCTTGGCCATTGAGATGGAACCCCATAGGTTAATCAAAATAAAGTGGAGTATGAAAGGATGGAGATAGAGAGGAAGTGGGATTTGAGCTATGAGAGGATTCTTGAAGGAAAATACTTTCCATATACAACATTTAAAGGTGTCTAGGTACTACACATCTCCCTATCAGCCACAAGTTCTTCCAAGAGTTAGAAGTGAAGGCCTTGTCCTCTAAATAAAATTCTTGAGGAAAAAAGAAGTGGTTTCCTAACCAAAATGGTTAAACTGAATTCAAATAGAAGAATGAATAAGGTCCTGTTCTTTCCTTGATATCTAATTCCTTCCAAATAAGGGCAAGCCAGAAGATGGGGAATCCGCATTTGATTCGGAATAGTAGTCTGTTGGTTAACTTTAATCCAAGATTGAGTTATATTTGTGAAAAGCTTTCTGATGATGACTTCATTGGAAGACAGGACACTTCGTACGTGTAGTCCACTAGACCTTTTGGGTGGGGTTTTCCTCTTCCTCCCTCACTAGGCTGTCTTTTTTTTTCGTTCTTTTTGTTAATAATACAGTGTGAAAAGCAAAATGGAGATCGTAACTTCCTCTTTAATTCTGTCCTCTGTTGTGGAACCGTTGGTCTACACGCTAAAGGATTGAGTTGGTGTCAACTTAGTTTGGCCTTCTTAATCTGCGAACAACCTCCTCCAGTTACTCCCTCTTAAGAGGAGGATAAAGTTCTTTGGAAGATCATTGTAACCGTCCAAGCCCACCGCTAACAGTTCTCTCAAAGTTTTTAAAACGCGTCTACTAGGAAGAGGTTTCCACACCCTTATAAAGAAGGATTCGTTCCTCTCTCCAACCGATGTGGGATCTCACAATCCACTCCCCCTTCGGGGTTCACTGTCCTCGTTGACACTCATTCCTCCAATTGATGTGGGATCTCTCAATCATGGTGAAGACTGATACTATGAGTTAGGGATTATAGGTTTGGAAGGAGTAGGATAACTTTTGTGGGGGTGGTAGGATAGTTTAAAATCATAGGTTTGGAAGGAGTAGGATAACTTTTGTGGGGGTGGTAGGATAGTTTAAAATCAAAGAAATCTCTTGTAACGATAAGGGTTTCAAAATGGAAAAAAAAAAAAAAAAAAAAAAAAACCGCCTTAAATCTCGCTGGAAATAGTATTTCCGGTGAGGCATGTCTTGCCAGCAAGGGCGTATTAATGCCTTAAGTCCCCATATTAAACCCTAGGTACCTTAGTAGCCGTCTTTTCTTTTTGAGTCACTGTTGTACCTGTGAGGGAGGAGCTGAAAGGTTTAGGTGAGGAATCGAAAACGTCGCGAGACTTCGGACTTCTGTGAGTCCTTAGATAGGAGCAAACCAACGCTGAGGTACGTTAGGGCAAGGAAGGACAGACGCACCATCAGGGACGAACGGACGATGACGATTCCACTGGCGACACGGGCGCGGGTCGGTTCGTCGGGTATTTTGCGAGTCGTCTCAGCCGACACCACCACTGGGCCGCGTCCCATTTCGGCCCGAAACCAGTGATGCCTAGACGCATCCAGAAACCCTGCGCCGTTAGTGGTCTTTGCAGCCCATCGGCTTCAGCTTCGTCGGCAGCTCTGTTGCACTCCAGGCTCGGCTCGACTCGGCAGTGTGGCTTAGCGGCTCGACGTACGAATAATATACCAATTCCTAGGTTTCCGACCCTTCTGGAGCCATTCCTACCCTTGTTTCAACCATCTGAGGTCAATAGAACTCCATTTTTTATAAAACAAGTTGTGATAGGGACGTACCTTGGTAGCTAGGCATAAGGGCTAGTTGTGAAATGGCTCTAAGCGTGTCATATGATCTTATAGGGGTAGTTAGGCGTCGGAGTTAGCGGTGCGAGTGACTTCTGCTAAGGTCAAGGAGATAAGTAACCTTACTGTTGGTTTTAGTTATGTATGTATGTTGGTGTGTGCCCTGTGGCCCTTGCATGCACGATGTGTGTTGTTGATGTATGCTAGGTTATATGTTTCTTGCAGTGAAATGCTACGTATGCCATGTATGTGATGTTTATGTCATGACTTGCTACCTTGTATGCATGAGCTTGATTGACGTGTCACGATTGTAATGAGAACTCCGCATGCCATGAATGTGATGACTAGTGTGCTACGATACGCTTACTGTTGTTTAATCCAGTTATGCTATGTAATGCGGCTATGATATGCTTATCCGTTGTTTAACCCAGTTATGCTATGTAATGCGGTGAGGGGATGGAACGTTGTATGTATAATGCCATGGAGGTAAACCTTAGGGACCTCATGCACGCTATGTGCTACGTGCATGGGGTTACTTCCCCGTTATGCTAATGATGGTACGGACGCGTACGTTCGATATTATGTTCGCTATGATATCATGCAGACCCTCCTTTTTCGTGGTGTCCGATATTGTATGTCATACGTACCCGACAAGCCAGGCTCAGGGAGTTTGCATGCGAACTTGCCTGGTGGGTCCACAGTCATGCATGTGGGCCATGTGTGGGAAAGTACCATGTATCCACCCCGCCCGGACAAAGCAAGGGCCTAAGGCCATGGGAAGGAATGGAAGATAGGCCCCCTCTCGTTTTCTTTCTTTAGCACTTGTGCTTATGTATGTGTATTGTATGCGATCGCATGTATCCTAATGTATGTTATATGCTTAATCCCAATAGTGGGGCGACTTACTGGGTATTTCATATAATACTCAAGCTACGTGCTACCTACATTTTCAGGTAAGGGCAAGGCCCCCATGTACGGCTGACGGTGAACGCTGCGAAGGCCATGGAAGTTTTAGGAAGGGCTTGTAGTGTCGTAGGCGTCTTGTTTGGACTCCTTGTTTGGACTCCCTCCGATGATAGTTATTGCAATTATTTCTTCTAGTTATCTATTGATTATTTCTTAGTTAGGCTGTTGTTATTGTTTTTCCCCAGGTATGAACGTATTGTCGTTATTGAGACTGTCTTACATAAACTTTCGTACTTTCGTTATACAAGTACAAGGTAACGACGCTAATTAGGTTAGAGAAAATTAGGGCGTTACATCTCTATTCTTCACACCCCACCATTTTTCTTCAAGATTCTCTTGATGCGACCCAAAACTTCATATTAGCATTTTTCTTCTTCCTCAGTGGTATAAGATGTTATTCATCCAAGAACATGAACTTCCTGTTAGCAACGATATTGTAAATGGGAACATTCTTGGTGATTACATTCAAGTTGCTTCCAAGTTTAGAGCTCATACAGGGGTTGAATATTTCCATACTGCCATGAATGAACGTTGTAAATGTGTAAATGCATTCTCAATCCTTTTCTGTTACTTCTGCTGCAGTTTGATTATCGTTTTGAATCCAACACACCATATATTAGTTTGTTTCGACTTCGTGCATATCGTACTCACATTTGCGTTCTCGGTCATGAATATATTCTTTTTTTCAGGAAGAAAACAGACAAAATTTTGGAAAGTCCAGGTTTCATGGACATCAATTTCTGGCAGGATGGTCTTTGAAGAGAGATTTGAGATTCTGAGCGGTTTTTTGTGGGTATTTTACCGAATTTTGGGATGCAGAAATGAATGTATTGTTCTGGACCTGCTGATGGTTAATTAGCTCAAATTATTCATTATATTTTAGGAATTATAATCTTTGGGGTTGCTCGAAATCTGTCAAAGACTTACTCTTACCCCAGAGTGGATGACTCGAATAGCTCGTAGCATGAGGTCGTATCTCTGGAAACACCGATGCCGGTCACATGCTTCAAAGTACAAAAGGGCGGAG

mRNA sequence

ATGACCAATTTTCTGTTCAAAGTTCCTCTGCGTCTCTTTGCTCAAGATCTCCAGAAGTTTGCAGGGAACGACACCACAATTTCCCGCAAATTCCTCTCTTCTCTGTCTGAAATCTCTCAATCAACCAACAATCGGACGGTCGACTACCTTGTTCATACCCTTGGATTCTCCAAGGACTCAGCTCTCGCCGCTGCGAAGCGAATCCATCTCAAAACTACTGCAAATCCCGACTCTGTCATTGCTCTCTTCAAGGCCTATGGATTCACACTGTCTGATACTGCCAGCATCTTTTGCAGACATCCTAATCTCCTCCTTGCCGATCCGGACACAATACTCAAACCTAAGTTTGAGTTTCTCTCTCGAAATGGTTTCACTGGTCATGTTCTCGTCGACGTAATCTCTAGGGATCCGTCAATTCTTAGAAGGAGTTTGAAGAAGCAGATTGTTCCGTGTATTGATTTTCTCAGAAATTTTTTTGGCTCTACTGATGGTGTAGTCTCGCTCTTTTCTGCTAGACGTGGGACTTGGGTTTTGCGAAAGTTTACAGAATCTGTGGCTCCCAATATCGAACTATTGAGAGCTAATGGCGTGCCTGATTCGAACATCGCGAAGATTTTTTGGATGCGCCCGAGGACACTAGCAAGGAATGCGGAAGAGTTCAGTGACATCGTCGAGAAGACGAAGGAAGCTGAGGAGCAGTTTCAATCTCTATTTCTCAAGCAGCCCACGATTATGAATTCGTCTGAAGAGCAAATAAAGAAGGCCTTGGATTTCTTGATGAACAAATTGGACTGGACGCACGAAGAAATTTCCAAGTACCCAAATGGTGGTTCCGAGGTCGTCTATTCTTCAGCACCTGATGTCAAAAGGAAGAAAACAGACAAAATTTTGGAAAGTCCAGGTTTCATGGACATCAATTTCTGGCAGGATGGTCTTTGAAGAGAGATTTGAGATTCTGAGCGGTTTTTTGTGGGTATTTTACCGAATTTTGGGATGCAGAAATGAATGTATTGTTCTGGACCTGCTGATGGTTAATTAGCTCAAATTATTCATTATATTTTAGGAATTATAATCTTTGGGGTTGCTCGAAATCTGTCAAAGACTTACTCTTACCCCAGAGTGGATGACTCGAATAGCTCGTAGCATGAGGTCGTATCTCTGGAAACACCGATGCCGGTCACATGCTTCAAAGTACAAAAGGGCGGAG

Coding sequence (CDS)

ATGACCAATTTTCTGTTCAAAGTTCCTCTGCGTCTCTTTGCTCAAGATCTCCAGAAGTTTGCAGGGAACGACACCACAATTTCCCGCAAATTCCTCTCTTCTCTGTCTGAAATCTCTCAATCAACCAACAATCGGACGGTCGACTACCTTGTTCATACCCTTGGATTCTCCAAGGACTCAGCTCTCGCCGCTGCGAAGCGAATCCATCTCAAAACTACTGCAAATCCCGACTCTGTCATTGCTCTCTTCAAGGCCTATGGATTCACACTGTCTGATACTGCCAGCATCTTTTGCAGACATCCTAATCTCCTCCTTGCCGATCCGGACACAATACTCAAACCTAAGTTTGAGTTTCTCTCTCGAAATGGTTTCACTGGTCATGTTCTCGTCGACGTAATCTCTAGGGATCCGTCAATTCTTAGAAGGAGTTTGAAGAAGCAGATTGTTCCGTGTATTGATTTTCTCAGAAATTTTTTTGGCTCTACTGATGGTGTAGTCTCGCTCTTTTCTGCTAGACGTGGGACTTGGGTTTTGCGAAAGTTTACAGAATCTGTGGCTCCCAATATCGAACTATTGAGAGCTAATGGCGTGCCTGATTCGAACATCGCGAAGATTTTTTGGATGCGCCCGAGGACACTAGCAAGGAATGCGGAAGAGTTCAGTGACATCGTCGAGAAGACGAAGGAAGCTGAGGAGCAGTTTCAATCTCTATTTCTCAAGCAGCCCACGATTATGAATTCGTCTGAAGAGCAAATAAAGAAGGCCTTGGATTTCTTGATGAACAAATTGGACTGGACGCACGAAGAAATTTCCAAGTACCCAAATGGTGGTTCCGAGGTCGTCTATTCTTCAGCACCTGATGTCAAAAGGAAGAAAACAGACAAAATTTTGGAAAGTCCAGGTTTCATGGACATCAATTTCTGGCAGGATGGTCTTTGA

Protein sequence

MTNFLFKVPLRLFAQDLQKFAGNDTTISRKFLSSLSEISQSTNNRTVDYLVHTLGFSKDSALAAAKRIHLKTTANPDSVIALFKAYGFTLSDTASIFCRHPNLLLADPDTILKPKFEFLSRNGFTGHVLVDVISRDPSILRRSLKKQIVPCIDFLRNFFGSTDGVVSLFSARRGTWVLRKFTESVAPNIELLRANGVPDSNIAKIFWMRPRTLARNAEEFSDIVEKTKEAEEQFQSLFLKQPTIMNSSEEQIKKALDFLMNKLDWTHEEISKYPNGGSEVVYSSAPDVKRKKTDKILESPGFMDINFWQDGL

Homology

[Close]

BLAST of CmoCh12G001040 vs. ExPASy Swiss-Prot
Match: Q9SZL6 (Transcription termination factor MTERF6, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=MTERF6 PE=2 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 4.6e-04
Identity = 24/79 (30.38%), Postives = 38/79 (48.10%), Query Frame = 0


Query: 82  LFKAYGFTLSDTASIFCRHPNLLLADPDTILKPKFEFLSRNGFTGHVLVDVISRDPSILR 141
           L  + G +     S+    P LL  D + ILKP +++L   GF    +  +++  P IL 
Sbjct: 194 LKSSVGLSEDGIKSVVMNFPQLLCRDVNKILKPNYDYLKECGFGDSQIATMVTGYPQILI 253

Query: 142 RSLKKQIVPCIDFLRNFFG 161
           +S+K  + P I FL    G
Sbjct: 254 KSVKNSLQPRIRFLVQVMG 272

[Close]

BLAST of CmoCh12G001040 vs. ExPASy TrEMBL
Match: A0A6J1GGM9 (uncharacterized protein LOC111454031 OS=Cucurbita moschata OX=3662 GN=LOC111454031 PE=3 SV=1)

HSP 1 Score: 529.3 bits (1362), Expect = 1.1e-146
Identity = 284/342 (83.04%), Postives = 287/342 (83.92%), Query Frame = 0


Query: 1   MTNFLFKVPLRLFAQDLQKFAGNDTTISRKFLSSLSEISQSTNNRTVDYLVHTLGFSKDS 60
           MTNFLFKVPLRLFAQDLQKFAGNDTTISRKFLSSLSEISQSTNNRTVDYLVHTLGFSKDS
Sbjct: 1   MTNFLFKVPLRLFAQDLQKFAGNDTTISRKFLSSLSEISQSTNNRTVDYLVHTLGFSKDS 60

Query: 61  ALAAAKRIHLKTTANPDSVIALFKAYGFTLSDTASIFCRHPNLLLADPDTILKPKFEFLS 120
           ALAAAKRIHLKTTANPDSVIALFKAYGFTLSDTASIFCRHPNLLLADPDTILKPKFEFLS
Sbjct: 61  ALAAAKRIHLKTTANPDSVIALFKAYGFTLSDTASIFCRHPNLLLADPDTILKPKFEFLS 120

Query: 121 RNGFTGHVLVDVISRDPSILRRSLKKQIVPCIDFLRNFFGSTDGVVSLFSARRGTWVLRK 180
           RNGFTGHVLVDVISRDPSILRRSLKKQIVPCIDFLRNFFGSTDGVVSLFSARRGTWVLRK
Sbjct: 121 RNGFTGHVLVDVISRDPSILRRSLKKQIVPCIDFLRNFFGSTDGVVSLFSARRGTWVLRK 180

Query: 181 FTESVAPNIELLRANGVPDSNIAKIFWMRPRTLARNAEEFSDIVEKTKEA---------- 240
           FTESVAPNIELLRANGVPDSNIAKIFWMRPRTLARNAEEFSDIVEKTKEA          
Sbjct: 181 FTESVAPNIELLRANGVPDSNIAKIFWMRPRTLARNAEEFSDIVEKTKEAGFNPSSPMFT 240

Query: 241 ---------------------------EEQFQSLFLKQPTIMNSSEEQIKKALDFLMNKL 300
                                      EEQFQSLFLKQPTIMNSSEEQIKKALDFLMNKL
Sbjct: 241 YGLCTFLGMKKDKWLSKLHIFTSFGWSEEQFQSLFLKQPTIMNSSEEQIKKALDFLMNKL 300

Query: 301 DWTHEEISKYPNGGSEVVYSSAPD--VKRKKTDKILESPGFM 304
           DWTHEEISKYPN    V+Y S     V R    + L S GF+
Sbjct: 301 DWTHEEISKYPN----VLYLSFEKRVVPRSSILQHLMSKGFI 338

[Close]

BLAST of CmoCh12G001040 vs. ExPASy TrEMBL
Match: A0A6J1KSF9 (uncharacterized protein LOC111496045 OS=Cucurbita maxima OX=3661 GN=LOC111496045 PE=3 SV=1)

HSP 1 Score: 505.8 bits (1301), Expect = 1.3e-139
Identity = 261/312 (83.65%), Postives = 272/312 (87.18%), Query Frame = 0


Query: 1   MTNFLFKVPLRLFAQDLQKFAGNDTTISRKFLSSLSEISQSTNNRTVDYLVHTLGFSKDS 60
           MTNFLFKVPLRLFAQ+LQKFAGND TISRKFLSSLS+IS+STNNRTVDYLVHTLGFSKDS
Sbjct: 1   MTNFLFKVPLRLFAQELQKFAGNDPTISRKFLSSLSKISESTNNRTVDYLVHTLGFSKDS 60

Query: 61  ALAAAKRIHLKTTANPDSVIALFKAYGFTLSDTASIFCRHPNLLLADPDTILKPKFEFLS 120
           ALAAAKRIHLK+TANPDSVIALFKAYGFTLSDTASIFCRHPNLLLADPDTILKPK EFLS
Sbjct: 61  ALAAAKRIHLKSTANPDSVIALFKAYGFTLSDTASIFCRHPNLLLADPDTILKPKIEFLS 120

Query: 121 RNGFTGHVLVDVISRDPSILRRSLKKQIVPCIDFLRNFFGSTDGVVSLFSARRGTWVLRK 180
           RNGFTGHVLVDVISRDPSILRRSLKKQIVPCIDFLRNFFGSTDG+VSLFSARRGTWVLRK
Sbjct: 121 RNGFTGHVLVDVISRDPSILRRSLKKQIVPCIDFLRNFFGSTDGIVSLFSARRGTWVLRK 180

Query: 181 FTESVAPNIELLRANGVPDSNIAKIFWMRPRTLARNAEEFSDIVEKTKEA---------- 240
           F+ESVAPNIELLRANGVPDSNIAKIFW+RPRTLAR+AEEFSDIVEKTKEA          
Sbjct: 181 FSESVAPNIELLRANGVPDSNIAKIFWVRPRTLARDAEEFSDIVEKTKEAGFNPSSPMFT 240

Query: 241 ---------------------------EEQFQSLFLKQPTIMNSSEEQIKKALDFLMNKL 276
                                      EEQFQSLFLKQPTIMNSSEE+IK+AL+F MNKL
Sbjct: 241 YGLCTYLGMKKDKWLSKLHIFTSFGWSEEQFQSLFLKQPTIMNSSEEKIKRALNFFMNKL 300

[Close]

BLAST of CmoCh12G001040 vs. ExPASy TrEMBL
Match: A0A6J1GHP2 (uncharacterized protein LOC111454032 OS=Cucurbita moschata OX=3662 GN=LOC111454032 PE=3 SV=1)

HSP 1 Score: 496.1 bits (1276), Expect = 1.1e-136
Identity = 258/311 (82.96%), Postives = 268/311 (86.17%), Query Frame = 0


Query: 1   MTNFLFKVPLRLFAQDLQKFAGNDTTISRKFLSSLSEISQSTNNRTVDYLVHTLGFSKDS 60
           MTNFLFKVPLRLFAQDLQKFAGNDTTISRKFLSSLSEISQSTNNRTVDYLVHTLGFSKDS
Sbjct: 1   MTNFLFKVPLRLFAQDLQKFAGNDTTISRKFLSSLSEISQSTNNRTVDYLVHTLGFSKDS 60

Query: 61  ALAAAKRIHLKTTANPDSVIALFKAYGFTLSDTASIFCRHPNLLLADPDTILKPKFEFLS 120
           ALAAAKRIHLKTTANPDSVIALFKAYGFTLSDTASIFCR+PNLLLADPDTILKPKFEFLS
Sbjct: 61  ALAAAKRIHLKTTANPDSVIALFKAYGFTLSDTASIFCRNPNLLLADPDTILKPKFEFLS 120

Query: 121 RNGFTGHVLVDVISRDPSILRRSLKKQIVPCIDFLRNFFGSTDGVVSLFSARRGTWVLRK 180
           RNGFTGHVLV+VISRDP ILRRSLKKQIVPCIDFLR FFGSTD +VSLFSARRGTWVLRK
Sbjct: 121 RNGFTGHVLVNVISRDPEILRRSLKKQIVPCIDFLRIFFGSTDVIVSLFSARRGTWVLRK 180

Query: 181 FTESVAPNIELLRANGVPDSNIAKIFWMRPRTLARNAEEFSDIVEKTKEA---------- 240
           F+ESVAPNIELLRANGVPDS IAKIFW+RPRTLAR+AEEFSDIVEKTKEA          
Sbjct: 181 FSESVAPNIELLRANGVPDSKIAKIFWVRPRTLARDAEEFSDIVEKTKEAGFNPSSPMFI 240

Query: 241 ---------------------------EEQFQSLFLKQPTIMNSSEEQIKKALDFLMNKL 275
                                      +EQFQSLFLKQPT MNSSEE+IK+ALDF MNKL
Sbjct: 241 YGLCTFSGMKKDKWLSKLHIFTSFGWSKEQFQSLFLKQPTFMNSSEEKIKRALDFFMNKL 300

[Close]

BLAST of CmoCh12G001040 vs. ExPASy TrEMBL
Match: A0A6J1GGI9 (uncharacterized protein LOC111454030 OS=Cucurbita moschata OX=3662 GN=LOC111454030 PE=3 SV=1)

HSP 1 Score: 494.2 bits (1271), Expect = 4.0e-136
Identity = 255/312 (81.73%), Postives = 266/312 (85.26%), Query Frame = 0


Query: 1   MTNFLFKVPLRLFAQDLQKFAGNDTTISRKFLSSLSEISQSTNNRTVDYLVHTLGFSKDS 60
           MTNFLFK+PLRLFAQDLQKFAGNDTTISRKFLSSLSE+S+STNNRTVDYLVHTLGFSKDS
Sbjct: 1   MTNFLFKLPLRLFAQDLQKFAGNDTTISRKFLSSLSEVSESTNNRTVDYLVHTLGFSKDS 60

Query: 61  ALAAAKRIHLKTTANPDSVIALFKAYGFTLSDTASIFCRHPNLLLADPDTILKPKFEFLS 120
           AL AAKRIHLK TANPDSVIALFKAYGFTLSDTASIFCR+PNLLLADPDT LKPKFEFLS
Sbjct: 61  ALVAAKRIHLKPTANPDSVIALFKAYGFTLSDTASIFCRNPNLLLADPDTTLKPKFEFLS 120

Query: 121 RNGFTGHVLVDVISRDPSILRRSLKKQIVPCIDFLRNFFGSTDGVVSLFSARRGTWVLRK 180
           RNGFTGHVLVDVISRDPSILRRSLKKQIVPCID LRNFFGST+G+VSLFS RRGTWVLR 
Sbjct: 121 RNGFTGHVLVDVISRDPSILRRSLKKQIVPCIDLLRNFFGSTNGIVSLFSNRRGTWVLRN 180

Query: 181 FTESVAPNIELLRANGVPDSNIAKIFWMRPRTLARNAEEFSDIVEKTKEA---------- 240
           F+ESVAPNIELLRANGVPDSNIAK+ W+RPRTLAR+AEEFSDIVEKTKEA          
Sbjct: 181 FSESVAPNIELLRANGVPDSNIAKMIWVRPRTLARDAEEFSDIVEKTKEAGFNPSSPMFI 240

Query: 241 ---------------------------EEQFQSLFLKQPTIMNSSEEQIKKALDFLMNKL 276
                                      EEQFQSLF KQPTIMNSSEEQIK+ALDF MNKL
Sbjct: 241 DGLCTLLGMKKDKWLSKLHIFTSFGWSEEQFQSLFRKQPTIMNSSEEQIKRALDFFMNKL 300

[Close]

BLAST of CmoCh12G001040 vs. ExPASy TrEMBL
Match: A0A6J1KMV5 (uncharacterized protein LOC111496044 OS=Cucurbita maxima OX=3661 GN=LOC111496044 PE=3 SV=1)

HSP 1 Score: 482.6 bits (1241), Expect = 1.2e-132
Identity = 251/312 (80.45%), Postives = 261/312 (83.65%), Query Frame = 0


Query: 1   MTNFLFKVPLRLFAQDLQKFAGNDTTISRKFLSSLSEISQSTNNRTVDYLVHTLGFSKDS 60
           MTNFLFKVPLR FAQ+LQKFAGND TISR FLSSLS+IS+STNNRTVDYLVHTLGFSKDS
Sbjct: 1   MTNFLFKVPLRFFAQELQKFAGNDPTISRNFLSSLSKISESTNNRTVDYLVHTLGFSKDS 60

Query: 61  ALAAAKRIHLKTTANPDSVIALFKAYGFTLSDTASIFCRHPNLLLADPDTILKPKFEFLS 120
           ALAAAKRIHLK+TANPDSVIALFKAYGFTLSDTASIFCRHP+LLLADPDTILKPK EFLS
Sbjct: 61  ALAAAKRIHLKSTANPDSVIALFKAYGFTLSDTASIFCRHPHLLLADPDTILKPKIEFLS 120

Query: 121 RNGFTGHVLVDVISRDPSILRRSLKKQIVPCIDFLRNFFGSTDGVVSLFSARRGTWVLRK 180
           RNGFTGHVLVDVISRDPSILRRSLK  IVPCIDFLRNFFGSTDG+VSLFSARRGTWVL  
Sbjct: 121 RNGFTGHVLVDVISRDPSILRRSLKNLIVPCIDFLRNFFGSTDGIVSLFSARRGTWVLHN 180

Query: 181 FTESVAPNIELLRANGVPDSNIAKIFWMRPRTLARNAEEFSDIVEKTKEA---------- 240
           F+ESVAPNIELLRANGV DSNIAK+ W RPRTLAR+AEEFSDIVEKTKEA          
Sbjct: 181 FSESVAPNIELLRANGVLDSNIAKMIWARPRTLARDAEEFSDIVEKTKEAGFNPSSPMFT 240

Query: 241 ---------------------------EEQFQSLFLKQPTIMNSSEEQIKKALDFLMNKL 276
                                      EEQFQSLFLKQPT M SSEEQIK+ALDF MNKL
Sbjct: 241 YGLCTFSVMKKDKWLSKLHIFTSFGWSEEQFQSLFLKQPTFMYSSEEQIKRALDFFMNKL 300

[Close]

BLAST of CmoCh12G001040 vs. TAIR 10
Match: AT5G07900.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 120.9 bits (302), Expect = 1.8e-27
Identity = 79/305 (25.90%), Postives = 148/305 (48.52%), Query Frame = 0


Query: 9   PLRLFAQDLQKFAGNDTTISRKFLSSLSEISQSTNNRTVDYLVHTLGFSKDSALAAAKRI 68
           P+ +F+   Q F+   TT++ K  +   +  Q   + T++YL+ + G S DSA  A++++
Sbjct: 37  PIFVFSLQTQ-FSSPVTTLTSK--NPKDDEQQQKLSFTLNYLIDSCGLSPDSATVASRKL 96

Query: 69  HLKTTANPDSVIALFKAYGFTLSDTASIFCRHPNLLLADPDTILKPKFEFLSRNGFTGHV 128
            L +   P++V+ L + +GFT +  +S+  + P LLLA+ +++L PK  F    G +  +
Sbjct: 97  LLDSPERPNTVLNLLRDHGFTTAQISSLVKKRPVLLLANAESVLLPKLSFFLSIGVSKSL 156

Query: 129 LVDVISRDPSILRRSLKKQIVPCIDFLRNFFGSTDGVVSLFSARRGTWV-LRKFTESVAP 188
           L   ++ DP+IL RSL  Q++P  +FL++   S + +V+  + RR TWV L   T+++ P
Sbjct: 157 LARTLASDPTILTRSLVNQLIPSYNFLKSVLDSDEKIVA--ALRRTTWVFLEDHTKNLVP 216

Query: 189 NIELLRANGVPDSNIAKIFWMRPRTLARNAEEFSDIVEKTKE------------------ 248
           NI  +   GVP+  I  +    P  + +   EF  I ++ +E                  
Sbjct: 217 NINYMAETGVPEKCIKLLLTHFPEAVMQKNHEFQAIAKQAQEMGFNPQKSTFVLAIHALS 276

Query: 249 --------------------AEEQFQSLFLKQPTIMNSSEEQIKKALDFLMNKLDWTHEE 275
                               +E+     F K P  M  SE +I + +++ +N+++     
Sbjct: 277 GKGNKSIWDKCFEVYQRWGWSEDDIMCAFKKHPHCMMLSERKINRTMEYFVNEMNMAPRS 336

[Close]

BLAST of CmoCh12G001040 vs. TAIR 10
Match: AT1G21150.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 107.1 bits (266), Expect = 2.7e-23
Identity = 79/306 (25.82%), Postives = 137/306 (44.77%), Query Frame = 0


Query: 46  TVDYLVHTLGFSKDSALAAAKRIHLKTTANPDSVIALFKAYGFTLSDTASIFCRHPNLLL 105
           TV YLV + G S +SA + ++ + L ++  PDSV+ALFK +GFT     S+    P +L 
Sbjct: 58  TVSYLVDSCGLSLESAKSNSRFVKLVSSKKPDSVLALFKDHGFTNDQITSVIKSFPRVLS 117

Query: 106 ADPDTILKPKFEFLSRNGFTGHVLVDVISRDPSILRRSLKKQIVPCIDFLRNFFGSTDGV 165
             P+ ++ PK  F S  GF+      +IS  P +L  SL K+++PC D L++     + V
Sbjct: 118 LSPEDVISPKLMFFSSIGFSTSDTAKMISSSPKMLSYSLHKRLIPCYDSLKSILVEEESV 177

Query: 166 VSLFSARRGTWVLRKFTESVAPNIELLRANGVPDSNIAKIFWMRPRTLARNAEEFSDIVE 225
           V         + L K T  V+  + + R  GVPD +I  +    P T       F++++ 
Sbjct: 178 VKCLKRGIRCFSL-KITHCVSLRVSICRELGVPDKSIKWLVQASPFTFFSRERRFNEVLN 237

Query: 226 K----------------------TKE---------------AEEQFQSLFLKQPTIMNSS 285
           +                      T E               ++E F +  ++ P  +  S
Sbjct: 238 RVCSYGFDPKKAGFVHAMVAFDCTSESAMERKFKLFQCFGWSKEDFVAAIMRFPNCVTVS 297

Query: 286 EEQIKKALDFLMNKLDWTHEEISKYPNGGSEVVYSSAPDVKRKKTDKILE---SPGFM-- 309
           +E+I   L++L+N +     +I   P     VV S + + + K  ++++    S G +  
Sbjct: 298 DEKIMYTLEYLVNNIGLQARDIVARP-----VVLSLSMEKRIKPRNQVISLLLSKGLVKK 357

[Close]

BLAST of CmoCh12G001040 vs. TAIR 10
Match: AT5G64950.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 85.5 bits (210), Expect = 8.3e-17
Identity = 69/291 (23.71%), Postives = 128/291 (43.99%), Query Frame = 0


Query: 24  DTTISRKFLSSLSEISQSTNNRTVDYLVHTLGFSKDSALAAAKRI-HLKTTANPDSVIAL 83
           D  +S    SS +  +  +N   V++L    GF K  A+A A R  +LK+   P SVI +
Sbjct: 19  DRALSLHHFSSNATPASISNPAFVEFL-RDNGFQKPLAIAIAMRYPNLKSLEQPRSVIQM 78

Query: 84  FKAYGFTLSDTASIFCRHPNLLLADPDTILKPKFEFLSRNGFTGHVLVDVISRDPSILRR 143
            K+Y F+ +        HP ++  + + IL+PK  F    GFTG  L   +S++ S++  
Sbjct: 79  LKSYSFSDTQIQKSIRVHPRMMFYNVEKILEPKLRFFKDIGFTGSGLGKFVSQNSSVVGV 138

Query: 144 SLKKQIVPCIDFLRNFFGSTDGVVSLFSARRGTWVL--RKFTESVAPNIELLRANGVPDS 203
           SL K+++P ++ L++        + +  +R G W+L  R     + PNI  L   G+  S
Sbjct: 139 SLVKKLIPTVEILKSIVAPKHEDLPVILSRCG-WLLLSRDPNLFLLPNISYLETCGIVGS 198

Query: 204 NIAKIFWMRPRTLARNAEE--------------------------FSDIVEKTKE----- 263
            +A +   +PR    + E+                           S + EKT +     
Sbjct: 199 QLASLLRRQPRIFNLSEEKLRGYVSRALDLGFTLNSRMLVHAVISLSSLSEKTFDRKVKL 258

Query: 264 ------AEEQFQSLFLKQPTIMNSSEEQIKKALDFLMNKLDWTHEEISKYP 275
                 +E++   +  + P ++  SE+++    +F + ++    E ++K P
Sbjct: 259 FMANGFSEDEITDIIRRSPGLIRCSEDKLTLGFEFYLKRMGLEREALAKRP 307

[Close]

BLAST of CmoCh12G001040 vs. TAIR 10
Match: AT1G61970.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 83.6 bits (205), Expect = 3.1e-16
Identity = 59/220 (26.82%), Postives = 105/220 (47.73%), Query Frame = 0


Query: 13  FAQDLQKFAGNDTTISRKFLSSLS-EISQSTNNRTVDYLVHTLGFSKDSALAAAKRIHLK 72
           F+  +QK +      S    + LS  + +  NN TV YLV +LG +   A + ++++  +
Sbjct: 20  FSLSVQKASPTSNFFSSASAACLSPRVGRKGNNFTVSYLVDSLGLTTKLAESISRKVSFE 79

Query: 73  TTANPDSVIALFKAYGFTLSDTASIFCRHPNLLLADPDTILKPKFEFLSRNGFTGHVLVD 132
              NPDSV+ L  ++GFT S  ++I   +P LL+AD +  L PK +FL   G +   + +
Sbjct: 80  DKNNPDSVLNLLTSHGFTGSQISTIIRDYPQLLIADAEKSLGPKLQFLQSRGASSSEITE 139

Query: 133 VISRDPSILRRSLKKQIVPCIDFLRNFF--GSTDGVVSLFSARRGTWVLRKFTESVAPNI 192
           ++S  P IL +   K I    DF+++     S+       S  +G        E+   N+
Sbjct: 140 IVSSVPEILGKKGHKTISVYYDFIKDTLLEKSSKNEKLCHSLPQGN------LENKIRNV 199

Query: 193 ELLRANGVPDSNIAKIFWMRPRTLARNAEEFSDIVEKTKE 230
            +LR  G+P   +  +     + +    E+F + ++K  E
Sbjct: 200 SVLRELGMPHKLLFSLLISDSQPVC-GKEKFEETLKKVVE 232

[Close]

BLAST of CmoCh12G001040 vs. TAIR 10
Match: AT1G61970.2 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 83.6 bits (205), Expect = 3.1e-16
Identity = 59/220 (26.82%), Postives = 105/220 (47.73%), Query Frame = 0


Query: 13  FAQDLQKFAGNDTTISRKFLSSLS-EISQSTNNRTVDYLVHTLGFSKDSALAAAKRIHLK 72
           F+  +QK +      S    + LS  + +  NN TV YLV +LG +   A + ++++  +
Sbjct: 20  FSLSVQKASPTSNFFSSASAACLSPRVGRKGNNFTVSYLVDSLGLTTKLAESISRKVSFE 79

Query: 73  TTANPDSVIALFKAYGFTLSDTASIFCRHPNLLLADPDTILKPKFEFLSRNGFTGHVLVD 132
              NPDSV+ L  ++GFT S  ++I   +P LL+AD +  L PK +FL   G +   + +
Sbjct: 80  DKNNPDSVLNLLTSHGFTGSQISTIIRDYPQLLIADAEKSLGPKLQFLQSRGASSSEITE 139

Query: 133 VISRDPSILRRSLKKQIVPCIDFLRNFF--GSTDGVVSLFSARRGTWVLRKFTESVAPNI 192
           ++S  P IL +   K I    DF+++     S+       S  +G        E+   N+
Sbjct: 140 IVSSVPEILGKKGHKTISVYYDFIKDTLLEKSSKNEKLCHSLPQGN------LENKIRNV 199

Query: 193 ELLRANGVPDSNIAKIFWMRPRTLARNAEEFSDIVEKTKE 230
            +LR  G+P   +  +     + +    E+F + ++K  E
Sbjct: 200 SVLRELGMPHKLLFSLLISDSQPVC-GKEKFEETLKKVVE 232

The following BLAST results are available for this feature:

BLAST of CmoCh12G001040 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SZL6	4.6e-04	30.38	Transcription termination factor MTERF6, chloroplastic/mitochondrial OS=Arabidop...	[more]

BLAST of CmoCh12G001040 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GGM9	1.1e-146	83.04	uncharacterized protein LOC111454031 OS=Cucurbita moschata OX=3662 GN=LOC1114540...	[more]
A0A6J1KSF9	1.3e-139	83.65	uncharacterized protein LOC111496045 OS=Cucurbita maxima OX=3661 GN=LOC111496045...	[more]
A0A6J1GHP2	1.1e-136	82.96	uncharacterized protein LOC111454032 OS=Cucurbita moschata OX=3662 GN=LOC1114540...	[more]
A0A6J1GGI9	4.0e-136	81.73	uncharacterized protein LOC111454030 OS=Cucurbita moschata OX=3662 GN=LOC1114540...	[more]
A0A6J1KMV5	1.2e-132	80.45	uncharacterized protein LOC111496044 OS=Cucurbita maxima OX=3661 GN=LOC111496044...	[more]

BLAST of CmoCh12G001040 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G07900.1	1.8e-27	25.90	Mitochondrial transcription termination factor family protein	[more]
AT1G21150.1	2.7e-23	25.82	Mitochondrial transcription termination factor family protein	[more]
AT5G64950.1	8.3e-17	23.71	Mitochondrial transcription termination factor family protein	[more]
AT1G61970.1	3.1e-16	26.82	Mitochondrial transcription termination factor family protein	[more]
AT1G61970.2	3.1e-16	26.82	Mitochondrial transcription termination factor family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	SMART	SM00733	mt_12	coord: 235..266 e-value: 0.94 score: 18.5 coord: 94..125 e-value: 0.0028 score: 26.9 coord: 130..162 e-value: 0.15 score: 21.1
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	PFAM	PF02536	mTERF	coord: 81..306 e-value: 7.2E-22 score: 77.7
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	PANTHER	PTHR13068	CGI-12 PROTEIN-RELATED	coord: 230..274 coord: 8..229
IPR038538	MTERF superfamily, mitochondrial/chloroplastic	GENE3D	1.25.70.10	Transcription termination factor 3, mitochondrial	coord: 60..227 e-value: 9.4E-30 score: 105.6 coord: 228..276 e-value: 1.6E-8 score: 36.0
None	No IPR available	PANTHER	PTHR13068:SF187	SUBFAMILY NOT NAMED	coord: 230..274 coord: 8..229

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh12G001040.1	CmoCh12G001040.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009658	chloroplast organization
biological_process	GO:0032502	developmental process
biological_process	GO:0006353	DNA-templated transcription, termination
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003690	double-stranded DNA binding