CmoCh11G008960 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh11G008960
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr11: 4589157 .. 4589435 (+)
RNA-Seq ExpressionCmoCh11G008960
SyntenyCmoCh11G008960
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTCGTCCGCGACACCACCGTCAGCCCTCCCAAGTACTTCCGCCGGAGCTGATCTCCGGCAAGGATCCCTCGCAGATCTTGGACTTCGACCGGTCTGTTTCCGGAGCCTTTTCCGGCCAACCCCATCAAGCAGCACCTGAAGCTGCTGCTGCTGCTGCTGCTGCAAATGCCGCCGCCTCAACTGCAATTCAACGGTCCAAAACAGCCGCCAGCCAGGAGGTTTCCGGCGCCGAGCAGTTCCCTCAGCTGACCAAAACGCCGCCTTCCGCCGCTTGA

mRNA sequence

ATGCCTCGTCCGCGACACCACCGTCAGCCCTCCCAAGTACTTCCGCCGGAGCTGATCTCCGGCAAGGATCCCTCGCAGATCTTGGACTTCGACCGGTCTGTTTCCGGAGCCTTTTCCGGCCAACCCCATCAAGCAGCACCTGAAGCTGCTGCTGCTGCTGCTGCTGCAAATGCCGCCGCCTCAACTGCAATTCAACGGTCCAAAACAGCCGCCAGCCAGGAGGTTTCCGGCGCCGAGCAGTTCCCTCAGCTGACCAAAACGCCGCCTTCCGCCGCTTGA

Coding sequence (CDS)

ATGCCTCGTCCGCGACACCACCGTCAGCCCTCCCAAGTACTTCCGCCGGAGCTGATCTCCGGCAAGGATCCCTCGCAGATCTTGGACTTCGACCGGTCTGTTTCCGGAGCCTTTTCCGGCCAACCCCATCAAGCAGCACCTGAAGCTGCTGCTGCTGCTGCTGCTGCAAATGCCGCCGCCTCAACTGCAATTCAACGGTCCAAAACAGCCGCCAGCCAGGAGGTTTCCGGCGCCGAGCAGTTCCCTCAGCTGACCAAAACGCCGCCTTCCGCCGCTTGA

Protein sequence

MPRPRHHRQPSQVLPPELISGKDPSQILDFDRSVSGAFSGQPHQAAPEAAAAAAAANAAASTAIQRSKTAASQEVSGAEQFPQLTKTPPSAA
Homology
BLAST of CmoCh11G008960 vs. ExPASy TrEMBL
Match: A0A0A0M0A1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G629040 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 9.4e-17
Identity = 60/90 (66.67%), Postives = 65/90 (72.22%), Query Frame = 0

Query: 1  MPRPRHHRQPSQVLPPELISGKDPSQILDFDRSVSGAFSGQPHQAAPEAAAAAAAANAAA 60
          MPRPRH RQ SQVLPP+ IS +DPSQILDF   V+GA SGQPHQ  P  A A AAA AAA
Sbjct: 1  MPRPRHQRQLSQVLPPDFISAEDPSQILDFSIGVAGAVSGQPHQ--PSQATANAAAAAAA 60

Query: 61 STAIQRSKTAASQEVSGAEQFPQLTKTPPS 91
          +T +QRSK  A QE SGA  F QL KT PS
Sbjct: 61 ATVLQRSKNPAGQEGSGAGHFSQLPKTAPS 88

BLAST of CmoCh11G008960 vs. NCBI nr
Match: KAG6588222.1 (hypothetical protein SDJN03_16787, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 149.4 bits (376), Expect = 1.5e-32
Identity = 85/93 (91.40%), Postives = 89/93 (95.70%), Query Frame = 0

Query: 1  MPRPRHHRQPSQVLPPELISGKDPSQILDFDRSVSGAFSGQPHQAAPE-AAAAAAAANAA 60
          MPRPRHHRQPSQVLPPELISG+DPSQILDF+R V+GAFSGQPHQAAPE AAAAAAAANAA
Sbjct: 1  MPRPRHHRQPSQVLPPELISGEDPSQILDFERPVAGAFSGQPHQAAPEAAAAAAAAANAA 60

Query: 61 ASTAIQRSKTAASQEVSGAEQFPQLTKTPPSAA 93
          AST IQ+SK AASQEVSGAEQFPQLTKTPPSAA
Sbjct: 61 ASTVIQQSKIAASQEVSGAEQFPQLTKTPPSAA 93

BLAST of CmoCh11G008960 vs. NCBI nr
Match: KGN66547.1 (hypothetical protein Csa_007065 [Cucumis sativus])

HSP 1 Score: 95.9 bits (237), Expect = 1.9e-16
Identity = 60/90 (66.67%), Postives = 65/90 (72.22%), Query Frame = 0

Query: 1  MPRPRHHRQPSQVLPPELISGKDPSQILDFDRSVSGAFSGQPHQAAPEAAAAAAAANAAA 60
          MPRPRH RQ SQVLPP+ IS +DPSQILDF   V+GA SGQPHQ  P  A A AAA AAA
Sbjct: 1  MPRPRHQRQLSQVLPPDFISAEDPSQILDFSIGVAGAVSGQPHQ--PSQATANAAAAAAA 60

Query: 61 STAIQRSKTAASQEVSGAEQFPQLTKTPPS 91
          +T +QRSK  A QE SGA  F QL KT PS
Sbjct: 61 ATVLQRSKNPAGQEGSGAGHFSQLPKTAPS 88

BLAST of CmoCh11G008960 vs. NCBI nr
Match: KAG6590166.1 (hypothetical protein SDJN03_15589, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 90.9 bits (224), Expect = 6.2e-15
Identity = 57/92 (61.96%), Postives = 64/92 (69.57%), Query Frame = 0

Query: 1  MPRPRHHRQPSQVLPPELISGKDPSQILDFDRSVSGAFSGQPHQAAPEAAAAAAAANAAA 60
          MPRPRH RQPSQVLPPELISG DPSQILDF ++V+   SGQPH+A   A   A AA    
Sbjct: 1  MPRPRHQRQPSQVLPPELISGVDPSQILDFGQAVARTVSGQPHKATEAATNVATAA---- 60

Query: 61 STAIQRSKTAASQE--VSGAEQFPQLTKTPPS 91
             +QRSKT+  QE   SG+  FPQL KTPPS
Sbjct: 61 -AVLQRSKTSGGQEGSGSGSGHFPQLPKTPPS 87

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0M0A19.4e-1766.67Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G629040 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KAG6588222.11.5e-3291.40hypothetical protein SDJN03_16787, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN66547.11.9e-1666.67hypothetical protein Csa_007065 [Cucumis sativus][more]
KAG6590166.16.2e-1561.96hypothetical protein SDJN03_15589, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..28
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 69..92

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh11G008960.1CmoCh11G008960.1mRNA