Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTGGATTTCGTAGTTCAAAATCCTTCACTTTACTTCTACCGCACTAAGAATTTTGAACTTCGAAATTTTAGGGCTTCTTTGTTCTTCTCTTATCCGTCATCTCATTTCCTTTTTGGAACGTGGCCCTTGATTTTGTTTCTTTTATTTGGATCCGTTAATGGACGCTCGAGATTCATCTTCTTCGACCACCCCGAATCGAGATGGGTCCTCATCGGCTGTTGAGGACGATGGTGCTGTTCCCGTCACTGCAGCTCTCGCCAAGGAAGCTGCATCGCTTTTTCAATCGGGGAAGTATGCTGGGTGTGTAGAGGTTTTGAACCAGTTGTTGCAGAAGAAAGAAGACGATCCTAAGGTTCGATTTATGATGCTTAATCTAATTTTGTTGAGTATTTGTACTTGCTGTTGAAGCGATTTAATCTATTCTACGATTTCGTTAGTTCTTTGTGTGCATGTGAAGATGTGGTTTAGACTTTTAATTCTATGATAGTGAAATGTTGAACTCAGAAATAATTTGGGGTGTTTTTTGTTTCCTTTTTTCCCCCCAGCTTAGCGAATGTCAAGATATGAATTATTCAAGGATTACATGCTAGAATCACATGCAATTTCATTGCATCATTTTGCTACACATAGCCTAATTCTGAAAGAACATGCAAGTTGGTGGTGATTTCCAGTGAATGTTATCATTTTCAATGGGTTTTATGATAATTAGATGGAATTTAGGTTCAGGTGCAAGTGTTTCTGTTCGTACATTATTTCATTTCTGTTTATCATTGGTCGCTTTGAATGTTAATTCTTCTAGTCATAAAATTGTTAACTAAACCTCTAACGTTAAGGTGACATGCGTCCAATAGACTTTCCCCAGCAACTGATGGCCCGGAAAATATTTAGGTTTTTAGCAGCTTAATTAACAAGCAACGGTGATCAACGTCATCAAAGGTCCCACAAGCATTTAAGATTGGTTTTACAAAATACGTGACCACTGTATTATCTGCCCATAATCATTCTCATCCCCAGATCCAGTACTTACAATTTCCGGAGCTTTTCATTTTAAAAGCATGAAGACAAATTCCGGGAGGGAGATAATATAATAATGACCCTGCCAAGTGACAATGGTTATGTGAATTTTGTTGTTTTTGTTAGTCTGACCAGTGACCATTCAATAAAACTGCGATCACATTTCACTTTGTAAAAAAAATTGTTGTTTATGGATTTTTGTCAGGTGCTTCATAATATCGCCATTTCTGAATACTTGAGGGATGGTTGTTCCAATCCAAAGAAGTTGCTTGAAGTATTAAACAATGTCAAGGTATGCCCTTAG
mRNA sequence
CTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTGGATTTCGTAGTTCAAAATCCTTCACTTTACTTCTACCGCACTAAGAATTTTGAACTTCGAAATTTTAGGGCTTCTTTGTTCTTCTCTTATCCGTCATCTCATTTCCTTTTTGGAACGTGGCCCTTGATTTTGTTTCTTTTATTTGGATCCGTTAATGGACGCTCGAGATTCATCTTCTTCGACCACCCCGAATCGAGATGGGTCCTCATCGGCTGTTGAGGACGATGGTGCTGTTCCCGTCACTGCAGCTCTCGCCAAGGAAGCTGCATCGCTTTTTCAATCGGGGAAGTATGCTGGGTGTGTAGAGGTTTTGAACCAGTTGTTGCAGAAGAAAGAAGACGATCCTAAGGTGCTTCATAATATCGCCATTTCTGAATACTTGAGGGATGGTTGTTCCAATCCAAAGAAGTTGCTTGAAGTATTAAACAATGTCAAGGTATGCCCTTAG
Coding sequence (CDS)
ATGGACGCTCGAGATTCATCTTCTTCGACCACCCCGAATCGAGATGGGTCCTCATCGGCTGTTGAGGACGATGGTGCTGTTCCCGTCACTGCAGCTCTCGCCAAGGAAGCTGCATCGCTTTTTCAATCGGGGAAGTATGCTGGGTGTGTAGAGGTTTTGAACCAGTTGTTGCAGAAGAAAGAAGACGATCCTAAGGTGCTTCATAATATCGCCATTTCTGAATACTTGAGGGATGGTTGTTCCAATCCAAAGAAGTTGCTTGAAGTATTAAACAATGTCAAGGTATGCCCTTAG
Protein sequence
MDARDSSSSTTPNRDGSSSAVEDDGAVPVTAALAKEAASLFQSGKYAGCVEVLNQLLQKKEDDPKVLHNIAISEYLRDGCSNPKKLLEVLNNVKVCP
Homology
BLAST of CmoCh11G005220 vs. ExPASy TrEMBL
Match:
A0A6J1ERX5 (CCR4-NOT transcription complex subunit 10-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111437239 PE=3 SV=1)
HSP 1 Score: 180.3 bits (456), Expect = 4.0e-42
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0
Query: 1 MDARDSSSSTTPNRDGSSSAVEDDGAVPVTAALAKEAASLFQSGKYAGCVEVLNQLLQKK 60
MDARDSSSSTTPNRDGSSSAVEDDGAVPVTAALAKEAASLFQSGKYAGCVEVLNQLLQKK
Sbjct: 1 MDARDSSSSTTPNRDGSSSAVEDDGAVPVTAALAKEAASLFQSGKYAGCVEVLNQLLQKK 60
Query: 61 EDDPKVLHNIAISEYLRDGCSNPKKLLEVLNNVK 95
EDDPKVLHNIAISEYLRDGCSNPKKLLEVLNNVK
Sbjct: 61 EDDPKVLHNIAISEYLRDGCSNPKKLLEVLNNVK 94
BLAST of CmoCh11G005220 vs. ExPASy TrEMBL
Match:
A0A6J1HLA5 (CCR4-NOT transcription complex subunit 10-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111465199 PE=3 SV=1)
HSP 1 Score: 178.3 bits (451), Expect = 1.5e-41
Identity = 93/94 (98.94%), Postives = 93/94 (98.94%), Query Frame = 0
Query: 1 MDARDSSSSTTPNRDGSSSAVEDDGAVPVTAALAKEAASLFQSGKYAGCVEVLNQLLQKK 60
MDARDSSSS TPNRDGSSSAVEDDGAVPVTAALAKEAASLFQSGKYAGCVEVLNQLLQKK
Sbjct: 1 MDARDSSSSATPNRDGSSSAVEDDGAVPVTAALAKEAASLFQSGKYAGCVEVLNQLLQKK 60
Query: 61 EDDPKVLHNIAISEYLRDGCSNPKKLLEVLNNVK 95
EDDPKVLHNIAISEYLRDGCSNPKKLLEVLNNVK
Sbjct: 61 EDDPKVLHNIAISEYLRDGCSNPKKLLEVLNNVK 94
BLAST of CmoCh11G005220 vs. ExPASy TrEMBL
Match:
A0A0A0LWB8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G228980 PE=4 SV=1)
HSP 1 Score: 169.5 bits (428), Expect = 7.0e-39
Identity = 87/96 (90.62%), Postives = 92/96 (95.83%), Query Frame = 0
Query: 1 MDARDSSSSTTPNRDGSSSAVEDDGAVPVTAALAKEAASLFQSGKYAGCVEVLNQLLQKK 60
MDARDSSSS+ NRDGSSSAVEDDGA+ +TAALA+EAASLFQSGKY GCVEVLNQLLQKK
Sbjct: 1 MDARDSSSSSALNRDGSSSAVEDDGALSITAALAREAASLFQSGKYVGCVEVLNQLLQKK 60
Query: 61 EDDPKVLHNIAISEYLRDGCSNPKKLLEVLNNVKVC 97
EDDPKVLHNIAI+EYLRDGCSNPKKLLEVLNNVKVC
Sbjct: 61 EDDPKVLHNIAIAEYLRDGCSNPKKLLEVLNNVKVC 96
BLAST of CmoCh11G005220 vs. ExPASy TrEMBL
Match:
A0A5D3C558 (CCR4-NOT transcription complex subunit 10 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold163G00740 PE=3 SV=1)
HSP 1 Score: 168.7 bits (426), Expect = 1.2e-38
Identity = 87/94 (92.55%), Postives = 91/94 (96.81%), Query Frame = 0
Query: 1 MDARDSSSSTTPNRDGSSSAVEDDGAVPVTAALAKEAASLFQSGKYAGCVEVLNQLLQKK 60
MDARDSSSS+ PNRD SSSAVEDDGA+ +TAALAKEAASLFQSGKYAGCVEVLNQLLQKK
Sbjct: 1 MDARDSSSSSAPNRDASSSAVEDDGALSITAALAKEAASLFQSGKYAGCVEVLNQLLQKK 60
Query: 61 EDDPKVLHNIAISEYLRDGCSNPKKLLEVLNNVK 95
EDDPKVLHNIAI+EYLRDGCSNPKKLLEVLNNVK
Sbjct: 61 EDDPKVLHNIAIAEYLRDGCSNPKKLLEVLNNVK 94
BLAST of CmoCh11G005220 vs. ExPASy TrEMBL
Match:
A0A5A7U7H5 (CCR4-NOT transcription complex subunit 10 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G001450 PE=3 SV=1)
HSP 1 Score: 168.7 bits (426), Expect = 1.2e-38
Identity = 87/94 (92.55%), Postives = 91/94 (96.81%), Query Frame = 0
Query: 1 MDARDSSSSTTPNRDGSSSAVEDDGAVPVTAALAKEAASLFQSGKYAGCVEVLNQLLQKK 60
MDARDSSSS+ PNRD SSSAVEDDGA+ +TAALAKEAASLFQSGKYAGCVEVLNQLLQKK
Sbjct: 1 MDARDSSSSSAPNRDASSSAVEDDGALSITAALAKEAASLFQSGKYAGCVEVLNQLLQKK 60
Query: 61 EDDPKVLHNIAISEYLRDGCSNPKKLLEVLNNVK 95
EDDPKVLHNIAI+EYLRDGCSNPKKLLEVLNNVK
Sbjct: 61 EDDPKVLHNIAIAEYLRDGCSNPKKLLEVLNNVK 94
BLAST of CmoCh11G005220 vs. NCBI nr
Match:
KAG6587882.1 (CCR4-NOT transcription complex subunit 10, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 180.3 bits (456), Expect = 8.2e-42
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0
Query: 1 MDARDSSSSTTPNRDGSSSAVEDDGAVPVTAALAKEAASLFQSGKYAGCVEVLNQLLQKK 60
MDARDSSSSTTPNRDGSSSAVEDDGAVPVTAALAKEAASLFQSGKYAGCVEVLNQLLQKK
Sbjct: 1 MDARDSSSSTTPNRDGSSSAVEDDGAVPVTAALAKEAASLFQSGKYAGCVEVLNQLLQKK 60
Query: 61 EDDPKVLHNIAISEYLRDGCSNPKKLLEVLNNVK 95
EDDPKVLHNIAISEYLRDGCSNPKKLLEVLNNVK
Sbjct: 61 EDDPKVLHNIAISEYLRDGCSNPKKLLEVLNNVK 94
BLAST of CmoCh11G005220 vs. NCBI nr
Match:
XP_022930892.1 (CCR4-NOT transcription complex subunit 10-like isoform X1 [Cucurbita moschata])
HSP 1 Score: 180.3 bits (456), Expect = 8.2e-42
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0
Query: 1 MDARDSSSSTTPNRDGSSSAVEDDGAVPVTAALAKEAASLFQSGKYAGCVEVLNQLLQKK 60
MDARDSSSSTTPNRDGSSSAVEDDGAVPVTAALAKEAASLFQSGKYAGCVEVLNQLLQKK
Sbjct: 1 MDARDSSSSTTPNRDGSSSAVEDDGAVPVTAALAKEAASLFQSGKYAGCVEVLNQLLQKK 60
Query: 61 EDDPKVLHNIAISEYLRDGCSNPKKLLEVLNNVK 95
EDDPKVLHNIAISEYLRDGCSNPKKLLEVLNNVK
Sbjct: 61 EDDPKVLHNIAISEYLRDGCSNPKKLLEVLNNVK 94
BLAST of CmoCh11G005220 vs. NCBI nr
Match:
KAG7021767.1 (CCR4-NOT transcription complex subunit 10 [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 180.3 bits (456), Expect = 8.2e-42
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0
Query: 1 MDARDSSSSTTPNRDGSSSAVEDDGAVPVTAALAKEAASLFQSGKYAGCVEVLNQLLQKK 60
MDARDSSSSTTPNRDGSSSAVEDDGAVPVTAALAKEAASLFQSGKYAGCVEVLNQLLQKK
Sbjct: 1 MDARDSSSSTTPNRDGSSSAVEDDGAVPVTAALAKEAASLFQSGKYAGCVEVLNQLLQKK 60
Query: 61 EDDPKVLHNIAISEYLRDGCSNPKKLLEVLNNVK 95
EDDPKVLHNIAISEYLRDGCSNPKKLLEVLNNVK
Sbjct: 61 EDDPKVLHNIAISEYLRDGCSNPKKLLEVLNNVK 94
BLAST of CmoCh11G005220 vs. NCBI nr
Match:
XP_022965291.1 (CCR4-NOT transcription complex subunit 10-like isoform X1 [Cucurbita maxima])
HSP 1 Score: 178.3 bits (451), Expect = 3.1e-41
Identity = 93/94 (98.94%), Postives = 93/94 (98.94%), Query Frame = 0
Query: 1 MDARDSSSSTTPNRDGSSSAVEDDGAVPVTAALAKEAASLFQSGKYAGCVEVLNQLLQKK 60
MDARDSSSS TPNRDGSSSAVEDDGAVPVTAALAKEAASLFQSGKYAGCVEVLNQLLQKK
Sbjct: 1 MDARDSSSSATPNRDGSSSAVEDDGAVPVTAALAKEAASLFQSGKYAGCVEVLNQLLQKK 60
Query: 61 EDDPKVLHNIAISEYLRDGCSNPKKLLEVLNNVK 95
EDDPKVLHNIAISEYLRDGCSNPKKLLEVLNNVK
Sbjct: 61 EDDPKVLHNIAISEYLRDGCSNPKKLLEVLNNVK 94
BLAST of CmoCh11G005220 vs. NCBI nr
Match:
XP_023530176.1 (CCR4-NOT transcription complex subunit 10-like isoform X1 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 177.9 bits (450), Expect = 4.1e-41
Identity = 92/94 (97.87%), Postives = 93/94 (98.94%), Query Frame = 0
Query: 1 MDARDSSSSTTPNRDGSSSAVEDDGAVPVTAALAKEAASLFQSGKYAGCVEVLNQLLQKK 60
MDARDSSSS TPNRDGSSSA+EDDGAVPVTAALAKEAASLFQSGKYAGCVEVLNQLLQKK
Sbjct: 1 MDARDSSSSATPNRDGSSSAIEDDGAVPVTAALAKEAASLFQSGKYAGCVEVLNQLLQKK 60
Query: 61 EDDPKVLHNIAISEYLRDGCSNPKKLLEVLNNVK 95
EDDPKVLHNIAISEYLRDGCSNPKKLLEVLNNVK
Sbjct: 61 EDDPKVLHNIAISEYLRDGCSNPKKLLEVLNNVK 94
BLAST of CmoCh11G005220 vs. TAIR 10
Match:
AT5G35430.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )
HSP 1 Score: 94.4 bits (233), Expect = 5.5e-20
Identity = 57/95 (60.00%), Postives = 69/95 (72.63%), Query Frame = 0
Query: 1 MDARDSSSSTTPNRDGSSSAVEDDGAV-PVTAALAKEAASLFQSGKYAGCVEVLNQLLQK 60
MD+RDS SS RD SS + DD AV VT+ LAK A S FQSGK+ C++VL QL Q
Sbjct: 1 MDSRDSLSSDAV-RDASS--LSDDAAVLSVTSTLAKTALSYFQSGKFEECIDVLIQLDQM 60
Query: 61 KEDDPKVLHNIAISEYLRDGCSNPKKLLEVLNNVK 95
K +DPKVLHN+AI+EY +DGCSN +KL+EVL VK
Sbjct: 61 KHNDPKVLHNMAIAEYFKDGCSNSEKLVEVLKRVK 92
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1ERX5 | 4.0e-42 | 100.00 | CCR4-NOT transcription complex subunit 10-like isoform X1 OS=Cucurbita moschata ... | [more] |
A0A6J1HLA5 | 1.5e-41 | 98.94 | CCR4-NOT transcription complex subunit 10-like isoform X1 OS=Cucurbita maxima OX... | [more] |
A0A0A0LWB8 | 7.0e-39 | 90.63 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G228980 PE=4 SV=1 | [more] |
A0A5D3C558 | 1.2e-38 | 92.55 | CCR4-NOT transcription complex subunit 10 OS=Cucumis melo var. makuwa OX=1194695... | [more] |
A0A5A7U7H5 | 1.2e-38 | 92.55 | CCR4-NOT transcription complex subunit 10 OS=Cucumis melo var. makuwa OX=1194695... | [more] |
Match Name | E-value | Identity | Description | |
KAG6587882.1 | 8.2e-42 | 100.00 | CCR4-NOT transcription complex subunit 10, partial [Cucurbita argyrosperma subsp... | [more] |
XP_022930892.1 | 8.2e-42 | 100.00 | CCR4-NOT transcription complex subunit 10-like isoform X1 [Cucurbita moschata] | [more] |
KAG7021767.1 | 8.2e-42 | 100.00 | CCR4-NOT transcription complex subunit 10 [Cucurbita argyrosperma subsp. argyros... | [more] |
XP_022965291.1 | 3.1e-41 | 98.94 | CCR4-NOT transcription complex subunit 10-like isoform X1 [Cucurbita maxima] | [more] |
XP_023530176.1 | 4.1e-41 | 97.87 | CCR4-NOT transcription complex subunit 10-like isoform X1 [Cucurbita pepo subsp.... | [more] |
Match Name | E-value | Identity | Description | |
AT5G35430.1 | 5.5e-20 | 60.00 | Tetratricopeptide repeat (TPR)-like superfamily protein | [more] |