Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTTTCTTGTTTTGCAGGAAAGTTTTGTTCTTTCTGTTTCTTCTTGCTGGTTTTGTCTTCACTCTCCAGCCTCAAACCGCATCTGGGCTCGCCACCATTGATGTTGCTCTCAAATGGGTGGCCTTCAAATCCCCTGCTATCCACACCCACAAGGCTGATGATTCTGTGAAGAAGTTGAACATGAAGAACATGAACGTGGCTCCCTCTCCCACCATGAACTTCGACCCCAACCAATCCAACAAAAGAAGAGTCAAGAAAGGATCCGACCCCATTCACAACAGATGCTAG
mRNA sequence
ATGGGTTTCTTGTTTTGCAGGAAAGTTTTGTTCTTTCTGTTTCTTCTTGCTGGTTTTGTCTTCACTCTCCAGCCTCAAACCGCATCTGGGCTCGCCACCATTGATGTTGCTCTCAAATGGGTGGCCTTCAAATCCCCTGCTATCCACACCCACAAGGCTGATGATTCTGTGAAGAAGTTGAACATGAAGAACATGAACGTGGCTCCCTCTCCCACCATGAACTTCGACCCCAACCAATCCAACAAAAGAAGAGTCAAGAAAGGATCCGACCCCATTCACAACAGATGCTAG
Coding sequence (CDS)
ATGGGTTTCTTGTTTTGCAGGAAAGTTTTGTTCTTTCTGTTTCTTCTTGCTGGTTTTGTCTTCACTCTCCAGCCTCAAACCGCATCTGGGCTCGCCACCATTGATGTTGCTCTCAAATGGGTGGCCTTCAAATCCCCTGCTATCCACACCCACAAGGCTGATGATTCTGTGAAGAAGTTGAACATGAAGAACATGAACGTGGCTCCCTCTCCCACCATGAACTTCGACCCCAACCAATCCAACAAAAGAAGAGTCAAGAAAGGATCCGACCCCATTCACAACAGATGCTAG
Protein sequence
MGFLFCRKVLFFLFLLAGFVFTLQPQTASGLATIDVALKWVAFKSPAIHTHKADDSVKKLNMKNMNVAPSPTMNFDPNQSNKRRVKKGSDPIHNRC
Homology
BLAST of CmoCh10G002060 vs. ExPASy TrEMBL
Match:
A0A0A0LPD5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G009720 PE=4 SV=1)
HSP 1 Score: 104.8 bits (260), Expect = 2.1e-19
Identity = 67/101 (66.34%), Postives = 76/101 (75.25%), Query Frame = 0
Query: 1 MGFLFCRKVLFFLFLLAGF---VFTLQPQ-TASGLATIDVALKWVAFKSP-AIHTHKADD 60
MG LF RK L F+F++A F V QPQ TA+GL+TID ALKWVAFKS I+THKAD
Sbjct: 1 MGSLFSRKGLRFVFVVACFLLCVLDQQPQTTANGLSTIDAALKWVAFKSTNTINTHKADS 60
Query: 61 SVKKLNMKNMNV-APSPTMNFDPNQSNKRRVKKGSDPIHNR 96
S + KN+N+ APSP MNFDPNQSNKR VKKGSDPIHNR
Sbjct: 61 S----DEKNLNLAAPSPAMNFDPNQSNKRGVKKGSDPIHNR 97
BLAST of CmoCh10G002060 vs. ExPASy TrEMBL
Match:
A0A067ENV6 (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g039594mg PE=4 SV=1)
HSP 1 Score: 79.7 bits (195), Expect = 7.2e-12
Identity = 45/88 (51.14%), Postives = 61/88 (69.32%), Query Frame = 0
Query: 11 FFLFLLAGFVFTLQPQTASGLATIDVALKWVAFKSPAIHTHKADDSV--KKLNMKNMNVA 70
F L + GF+ +LQPQ SGL +ID+ L+W PA+ + +V K L M N ++A
Sbjct: 9 FILLVCIGFL-SLQPQNVSGLRSIDLVLRWDKEVLPAVRNTRILKAVPLKDLQM-NPSLA 68
Query: 71 PSPTMNFDPNQSNKRRVKKGSDPIHNRC 97
P+P++ FDPNQSNKR+V+KGSDPIHNRC
Sbjct: 69 PAPSLMFDPNQSNKRKVRKGSDPIHNRC 94
BLAST of CmoCh10G002060 vs. ExPASy TrEMBL
Match:
M5WYZ5 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_5G193600 PE=4 SV=1)
HSP 1 Score: 79.0 bits (193), Expect = 1.2e-11
Identity = 50/100 (50.00%), Postives = 71/100 (71.00%), Query Frame = 0
Query: 1 MGFLFCRKVLFFLFLLAGFVFTLQPQTASGLATIDVALKW----VAFKSPAIHTHKADDS 60
MGFL R + LF+ GF+ LQP+ SGL ++D+AL+W ++F ++H KA +
Sbjct: 1 MGFLAYRSAV--LFVCIGFL-ALQPEKVSGLRSMDLALRWDKGHMSFLK-SLHLVKA-VA 60
Query: 61 VKKLNMKNMNVAPSPTMNFDPNQSNKRRVKKGSDPIHNRC 97
V+ L K +++AP+P+M FDPNQSNKR+V+KGSDPIHNRC
Sbjct: 61 VEDLQAK-LSLAPAPSMTFDPNQSNKRKVRKGSDPIHNRC 94
BLAST of CmoCh10G002060 vs. ExPASy TrEMBL
Match:
A0A314XM06 (Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_31163 PE=4 SV=1)
HSP 1 Score: 79.0 bits (193), Expect = 1.2e-11
Identity = 50/100 (50.00%), Postives = 71/100 (71.00%), Query Frame = 0
Query: 1 MGFLFCRKVLFFLFLLAGFVFTLQPQTASGLATIDVALKW----VAFKSPAIHTHKADDS 60
MGFL R + LF+ GF+ LQP+ SGL ++D+AL+W ++F ++H KA +
Sbjct: 1 MGFLAYRSAV--LFVCIGFL-ALQPEKVSGLRSMDLALRWDKGHMSFLK-SLHLVKA-VA 60
Query: 61 VKKLNMKNMNVAPSPTMNFDPNQSNKRRVKKGSDPIHNRC 97
V+ L K +++AP+P+M FDPNQSNKR+V+KGSDPIHNRC
Sbjct: 61 VEDLQAK-LSLAPAPSMTFDPNQSNKRKVRKGSDPIHNRC 94
BLAST of CmoCh10G002060 vs. ExPASy TrEMBL
Match:
V4VM13 (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10023845mg PE=4 SV=1)
HSP 1 Score: 79.0 bits (193), Expect = 1.2e-11
Identity = 45/88 (51.14%), Postives = 60/88 (68.18%), Query Frame = 0
Query: 11 FFLFLLAGFVFTLQPQTASGLATIDVALKWVAFKSPAIHTHKADDSV--KKLNMKNMNVA 70
F L + GF+ +LQPQ SGL +ID L+W PA+ + +V K L M N ++A
Sbjct: 9 FILLVCIGFL-SLQPQNVSGLRSIDFVLRWDKEVLPAVRNTRILKAVPLKDLQM-NPSLA 68
Query: 71 PSPTMNFDPNQSNKRRVKKGSDPIHNRC 97
P+P++ FDPNQSNKR+V+KGSDPIHNRC
Sbjct: 69 PAPSLMFDPNQSNKRKVRKGSDPIHNRC 94
BLAST of CmoCh10G002060 vs. NCBI nr
Match:
KAG6589506.1 (hypothetical protein SDJN03_14929, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 181.8 bits (460), Expect = 2.8e-42
Identity = 93/97 (95.88%), Postives = 94/97 (96.91%), Query Frame = 0
Query: 1 MGFLFCRKVLFFLFLLAGFVFT-LQPQTASGLATIDVALKWVAFKSPAIHTHKADDSVKK 60
MGFLFCRKVLFFLFLLAGFVF+ LQPQTASGLATIDVALKWVAFKSPAIHTHKADDS KK
Sbjct: 1 MGFLFCRKVLFFLFLLAGFVFSLLQPQTASGLATIDVALKWVAFKSPAIHTHKADDSEKK 60
Query: 61 LNMKNMNVAPSPTMNFDPNQSNKRRVKKGSDPIHNRC 97
LNMKNMNVAPSP MNFDPNQSNKRRVKKGSDPIHNRC
Sbjct: 61 LNMKNMNVAPSPAMNFDPNQSNKRRVKKGSDPIHNRC 97
BLAST of CmoCh10G002060 vs. NCBI nr
Match:
KAG6587538.1 (hypothetical protein SDJN03_16103, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 123.2 bits (308), Expect = 1.2e-24
Identity = 65/88 (73.86%), Postives = 71/88 (80.68%), Query Frame = 0
Query: 8 KVLFFLFLLAGFVFTLQPQTASGLATIDVALKWVAFKSPAIHTHKADDSVKKLNMKNMNV 67
K L F LLAG +QPQTASGL TID+ALKWVAFKSP +TH DSVKKL MKNM++
Sbjct: 5 KALVFALLLAGVSLCVQPQTASGLTTIDLALKWVAFKSPITNTHN-PDSVKKLKMKNMSL 64
Query: 68 APSPTMNFDPNQSNKRRVKKGSDPIHNR 96
APSP M+FDPNQSNKR VKKGSDPIHNR
Sbjct: 65 APSPAMHFDPNQSNKRGVKKGSDPIHNR 91
BLAST of CmoCh10G002060 vs. NCBI nr
Match:
KGN63668.1 (hypothetical protein Csa_014085 [Cucumis sativus])
HSP 1 Score: 104.8 bits (260), Expect = 4.3e-19
Identity = 67/101 (66.34%), Postives = 76/101 (75.25%), Query Frame = 0
Query: 1 MGFLFCRKVLFFLFLLAGF---VFTLQPQ-TASGLATIDVALKWVAFKSP-AIHTHKADD 60
MG LF RK L F+F++A F V QPQ TA+GL+TID ALKWVAFKS I+THKAD
Sbjct: 1 MGSLFSRKGLRFVFVVACFLLCVLDQQPQTTANGLSTIDAALKWVAFKSTNTINTHKADS 60
Query: 61 SVKKLNMKNMNV-APSPTMNFDPNQSNKRRVKKGSDPIHNR 96
S + KN+N+ APSP MNFDPNQSNKR VKKGSDPIHNR
Sbjct: 61 S----DEKNLNLAAPSPAMNFDPNQSNKRGVKKGSDPIHNR 97
BLAST of CmoCh10G002060 vs. NCBI nr
Match:
KDO55565.1 (hypothetical protein CISIN_1g039594mg [Citrus sinensis])
HSP 1 Score: 79.7 bits (195), Expect = 1.5e-11
Identity = 45/88 (51.14%), Postives = 61/88 (69.32%), Query Frame = 0
Query: 11 FFLFLLAGFVFTLQPQTASGLATIDVALKWVAFKSPAIHTHKADDSV--KKLNMKNMNVA 70
F L + GF+ +LQPQ SGL +ID+ L+W PA+ + +V K L M N ++A
Sbjct: 9 FILLVCIGFL-SLQPQNVSGLRSIDLVLRWDKEVLPAVRNTRILKAVPLKDLQM-NPSLA 68
Query: 71 PSPTMNFDPNQSNKRRVKKGSDPIHNRC 97
P+P++ FDPNQSNKR+V+KGSDPIHNRC
Sbjct: 69 PAPSLMFDPNQSNKRKVRKGSDPIHNRC 94
BLAST of CmoCh10G002060 vs. NCBI nr
Match:
XP_006440599.1 (CLAVATA3/ESR (CLE)-related protein 45 [Citrus clementina] >ESR53839.1 hypothetical protein CICLE_v10023845mg [Citrus clementina])
HSP 1 Score: 79.0 bits (193), Expect = 2.6e-11
Identity = 45/88 (51.14%), Postives = 60/88 (68.18%), Query Frame = 0
Query: 11 FFLFLLAGFVFTLQPQTASGLATIDVALKWVAFKSPAIHTHKADDSV--KKLNMKNMNVA 70
F L + GF+ +LQPQ SGL +ID L+W PA+ + +V K L M N ++A
Sbjct: 9 FILLVCIGFL-SLQPQNVSGLRSIDFVLRWDKEVLPAVRNTRILKAVPLKDLQM-NPSLA 68
Query: 71 PSPTMNFDPNQSNKRRVKKGSDPIHNRC 97
P+P++ FDPNQSNKR+V+KGSDPIHNRC
Sbjct: 69 PAPSLMFDPNQSNKRKVRKGSDPIHNRC 94
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0LPD5 | 2.1e-19 | 66.34 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G009720 PE=4 SV=1 | [more] |
| A0A067ENV6 | 7.2e-12 | 51.14 | Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g039594mg PE=4 SV=1 | [more] |
| M5WYZ5 | 1.2e-11 | 50.00 | Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_5G193600 PE=4 SV=1 | [more] |
| A0A314XM06 | 1.2e-11 | 50.00 | Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_311... | [more] |
| V4VM13 | 1.2e-11 | 51.14 | Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10023845mg PE=4 ... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| KAG6589506.1 | 2.8e-42 | 95.88 | hypothetical protein SDJN03_14929, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| KAG6587538.1 | 1.2e-24 | 73.86 | hypothetical protein SDJN03_16103, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| KGN63668.1 | 4.3e-19 | 66.34 | hypothetical protein Csa_014085 [Cucumis sativus] | [more] |
| KDO55565.1 | 1.5e-11 | 51.14 | hypothetical protein CISIN_1g039594mg [Citrus sinensis] | [more] |
| XP_006440599.1 | 2.6e-11 | 51.14 | CLAVATA3/ESR (CLE)-related protein 45 [Citrus clementina] >ESR53839.1 hypothetic... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
