CmoCh08G004870 (gene) Cucurbita moschata (Rifu) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AACAGAGAGCTCTGATGGGTAAAGCCAAATCCTTCAAGAACGAGTTCTCCTATGGTATGAACCTTTTTATGGCTTAAAATTCAGGATGATTTTCGTTATTTTTCATCAATTTGCCTCTTAGTTTGATACGTTTGGAGATCCTTATTGAATCATGGCGTTGAATTTTTCGTAGAACAACGATCGGAGGAGTCGTTCGAAATCTTGATCAAGTATCCGGATCGAGTCCCCGTAAGTTGCCAAATTCTCACATTATGCGCTTCTTATTTGAGAAGATTCGTATTGTTGCATTTTGTTTAGAAATTATAGATGTTGGTGAATTTATGAATTTGGTGGAAATAGGTAACTCAGAAAGTCTGCAGGTGTCCAATCCTTAGGCTTTTATCTTTGTTTCCTCTTGGTTGAAGCGTTATCGTTATGATTTTTTGTTTTTTTTCTTAGAGATTGTTCGCGCAATTTGCCATGGGGGATGCTTTTCAGATAAATTCTTCAGGAAATGAAATGCTGAAGTTATCAGATGATTTTAGTCAATGTTTTCTTTGTTATCTAAGAACAAAATTGTATCCGGATTTTTTTTCAACTCGTGGATAGAAGCTGCTTGTTCTTTGTATCAAGCGATACCAAGGCGATTTCAAGTTTGGTAGGCTTGGACAGAGCTATATAGAAGGAAGCAAATCACTATTTTTGTTTCCTAAAAAACAATATCACTGAAGTTAATGTGCAGACTCAATTATGTGACGTTCTTATATTTTTGAGGTGTAAATGCTAGATTGCTGTTCTTCATTTCCTCCAAATCCATGAAAGTGATTTAATGGTTTTCCTTTTGATGTTCTTTCTGAGTATAATTGCAGGTAATTGTCGAGAGATATGAGAAATGTGAACTTCCTGAGATGGAAAAGAAGAAGTAAGTTCTTCCTGCATATCTAAGCTTCCTCAATGTTTCAGTTCTCCTAATTTCATGTACCTCTCTCTGAAAATCAATTGAATGGAAACAGACACTATCACCTTTGCATTACACTCTTAACATGTTTATGTTTGTTCTTGTTAATGTTTGAGAAACCATTTTTGGGTACTGGCTCCGATCGTAAGCGTCGAATTTCAATGTTCCTCACAAAATTGTCAAAAAATTATCGATTGTGACTCAGTTTTTTTTCAAACGGCCCAATCAAAGTTTCCAAATTAGGGTCTCGGTTTTAACCCTGTACATATGGTGCTATAGGCTCTCTTTCTTCCTATCACATGATCATCCTCCCCCGAAAAAAAAACATCATGGTATTTATTTATTCACATTTGGGAATTAAAACATAGTCTCACATAATGTCTTACACGTTCTATTCCAACATTTTCTCGTCTCGTTAGATACGATTTTCATTGAATTTCTGCAGAACTATGGGATCTGAACAGGGGTTTTGTACATGTTGCCTAGGTTTACATTTGAAAGCCAGTTGTGATCCTAAAATAACATGACATATTGTGTCTATTAGGTTTGGTTTGTCTGTTGAATGTCTTTTGTTTTGTTATTGACTAAAGGTACCTGATTCCTCGAGACATGTCTGTTGGCCAATTCATCCATGTCCTGAGCACCAGGCTTCGTCTAGCACCTGGAAAAGCTCTCTTTGTATTTGTAAAGAATACTTTGCCTCAAACAGGTAGGGTTAGGACATAGGATTACATTTGAGATGATGCTGCTGCCCATTTTTACGTGCATTCTCGTGCAACAAGTCGTTTTAATCCTAAACAGTTGCCCTCAAATTTTGCAGCTAGCTTAATGAGTACCGCGTACGAATCATACAAGGACGACGATGGCTTTCTGTACATGTGTTACAGCAGTGAAAAGACCTTTGGCTAAGGTAATAATCTGATTGAGATTTGTGAATGCTGAAGTTGTTGTATACTTTCTGCTGCTCCTCCTGTTGTGAGTATTATATTCCATGAACAAATTTGTTCTTACCATGTAGACATTATTATGTATAATGTGTAAATCATTTAATATTGTAACGGCCTAAGCCTACTGCTAGTAGATATTGTCCTCTTTGGCCTTTCTCTTTTGGACTTCCCCTCAAGGTTTTTAAAACGCGTC AACAGAGAGCTCTGATGGGTAAAGCCAAATCCTTCAAGAACGAGTTCTCCTATGAACAACGATCGGAGGAGTCGTTCGAAATCTTGATCAAGTATCCGGATCGAGTCCCCGTAATTGTCGAGAGATATGAGAAATGTGAACTTCCTGAGATGGAAAAGAAGAAGTACCTGATTCCTCGAGACATGTCTGTTGGCCAATTCATCCATGTCCTGAGCACCAGGCTTCGTCTAGCACCTGGAAAAGCTCTCTTTGTATTTGTAAAGAATACTTTGCCTCAAACAGCTAGCTTAATGAGTACCGCGTACGAATCATACAAGGACGACGATGGCTTTCTGTACATGTGTTACAGCAGTGAAAAGACCTTTGGCTAAGGTAATAATCTGATTGAGATTTGTGAATGCTGAAGTTGTTGTATACTTTCTGCTGCTCCTCCTGTTGTGAGTATTATATTCCATGAACAAATTTGTTCTTACCATGTAGACATTATTATGTATAATGTGTAAATCATTTAATATTGTAACGGCCTAAGCCTACTGCTAGTAGATATTGTCCTCTTTGGCCTTTCTCTTTTGGACTTCCCCTCAAGGTTTTTAAAACGCGTC ATGGGTAAAGCCAAATCCTTCAAGAACGAGTTCTCCTATGAACAACGATCGGAGGAGTCGTTCGAAATCTTGATCAAGTATCCGGATCGAGTCCCCGTAATTGTCGAGAGATATGAGAAATGTGAACTTCCTGAGATGGAAAAGAAGAAGTACCTGATTCCTCGAGACATGTCTGTTGGCCAATTCATCCATGTCCTGAGCACCAGGCTTCGTCTAGCACCTGGAAAAGCTCTCTTTGTATTTGTAAAGAATACTTTGCCTCAAACAGCTAGCTTAATGAGTACCGCGTACGAATCATACAAGGACGACGATGGCTTTCTGTACATGTGTTACAGCAGTGAAAAGACCTTTGGCTAA MGKAKSFKNEFSYEQRSEESFEILIKYPDRVPVIVERYEKCELPEMEKKKYLIPRDMSVGQFIHVLSTRLRLAPGKALFVFVKNTLPQTASLMSTAYESYKDDDGFLYMCYSSEKTFG Homology
BLAST of CmoCh08G004870 vs. ExPASy Swiss-Prot
Match: Q9LRP7 (Autophagy-related protein 8i OS=Arabidopsis thaliana OX=3702 GN=ATG8I PE=1 SV=1) HSP 1 Score: 170.6 bits (431), Expect = 1.0e-41 Identity = 80/114 (70.18%), Postives = 98/114 (85.96%), Query Frame = 0
BLAST of CmoCh08G004870 vs. ExPASy Swiss-Prot
Match: Q8S925 (Autophagy-related protein 8h OS=Arabidopsis thaliana OX=3702 GN=ATG8H PE=1 SV=1) HSP 1 Score: 162.5 bits (410), Expect = 2.8e-39 Identity = 74/114 (64.91%), Postives = 96/114 (84.21%), Query Frame = 0
BLAST of CmoCh08G004870 vs. ExPASy Swiss-Prot
Match: Q2RBS4 (Autophagy-related protein 8D OS=Oryza sativa subsp. japonica OX=39947 GN=ATG8D PE=3 SV=2) HSP 1 Score: 157.5 bits (397), Expect = 9.1e-38 Identity = 75/117 (64.10%), Postives = 95/117 (81.20%), Query Frame = 0
BLAST of CmoCh08G004870 vs. ExPASy Swiss-Prot
Match: Q9SL04 (Autophagy-related protein 8d OS=Arabidopsis thaliana OX=3702 GN=ATG8D PE=1 SV=1) HSP 1 Score: 143.3 bits (360), Expect = 1.8e-33 Identity = 65/113 (57.52%), Postives = 90/113 (79.65%), Query Frame = 0
BLAST of CmoCh08G004870 vs. ExPASy Swiss-Prot
Match: Q2XPP5 (Autophagy-related protein 8A OS=Oryza sativa subsp. indica OX=39946 GN=ATG8A PE=1 SV=1) HSP 1 Score: 142.9 bits (359), Expect = 2.3e-33 Identity = 69/113 (61.06%), Postives = 88/113 (77.88%), Query Frame = 0
BLAST of CmoCh08G004870 vs. ExPASy TrEMBL
Match: A0A6J1H7R2 (Autophagy-related protein OS=Cucurbita moschata OX=3662 GN=LOC111461254 PE=3 SV=1) HSP 1 Score: 236.9 bits (603), Expect = 4.4e-59 Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 0
BLAST of CmoCh08G004870 vs. ExPASy TrEMBL
Match: A0A6J1L0B7 (Autophagy-related protein OS=Cucurbita maxima OX=3661 GN=LOC111497916 PE=3 SV=1) HSP 1 Score: 231.5 bits (589), Expect = 1.8e-57 Identity = 115/118 (97.46%), Postives = 115/118 (97.46%), Query Frame = 0
BLAST of CmoCh08G004870 vs. ExPASy TrEMBL
Match: A0A6J1GQC4 (Autophagy-related protein OS=Cucurbita moschata OX=3662 GN=LOC111456510 PE=3 SV=1) HSP 1 Score: 220.7 bits (561), Expect = 3.2e-54 Identity = 109/118 (92.37%), Postives = 111/118 (94.07%), Query Frame = 0
BLAST of CmoCh08G004870 vs. ExPASy TrEMBL
Match: A0A6J1CW54 (Autophagy-related protein OS=Momordica charantia OX=3673 GN=LOC111014838 PE=3 SV=1) HSP 1 Score: 219.9 bits (559), Expect = 5.5e-54 Identity = 107/118 (90.68%), Postives = 113/118 (95.76%), Query Frame = 0
BLAST of CmoCh08G004870 vs. ExPASy TrEMBL
Match: A0A5D3CGI6 (Autophagy-related protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G00040 PE=3 SV=1) HSP 1 Score: 219.2 bits (557), Expect = 9.4e-54 Identity = 107/118 (90.68%), Postives = 112/118 (94.92%), Query Frame = 0
BLAST of CmoCh08G004870 vs. NCBI nr
Match: XP_022960552.1 (autophagy-related protein 8i-like [Cucurbita moschata]) HSP 1 Score: 236.9 bits (603), Expect = 9.0e-59 Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 0
BLAST of CmoCh08G004870 vs. NCBI nr
Match: KAG6593267.1 (Autophagy-related protein 8i, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 235.3 bits (599), Expect = 2.6e-58 Identity = 117/118 (99.15%), Postives = 117/118 (99.15%), Query Frame = 0
BLAST of CmoCh08G004870 vs. NCBI nr
Match: KAG7025617.1 (Autophagy-related protein 8i [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 234.6 bits (597), Expect = 4.5e-58 Identity = 116/118 (98.31%), Postives = 117/118 (99.15%), Query Frame = 0
BLAST of CmoCh08G004870 vs. NCBI nr
Match: XP_023004698.1 (autophagy-related protein 8i-like [Cucurbita maxima]) HSP 1 Score: 231.5 bits (589), Expect = 3.8e-57 Identity = 115/118 (97.46%), Postives = 115/118 (97.46%), Query Frame = 0
BLAST of CmoCh08G004870 vs. NCBI nr
Match: XP_023513717.1 (autophagy-related protein 8i-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 231.1 bits (588), Expect = 4.9e-57 Identity = 115/118 (97.46%), Postives = 115/118 (97.46%), Query Frame = 0
BLAST of CmoCh08G004870 vs. TAIR 10
Match: AT3G15580.1 (Ubiquitin-like superfamily protein ) HSP 1 Score: 170.6 bits (431), Expect = 7.4e-43 Identity = 80/114 (70.18%), Postives = 98/114 (85.96%), Query Frame = 0
BLAST of CmoCh08G004870 vs. TAIR 10
Match: AT3G06420.1 (Ubiquitin-like superfamily protein ) HSP 1 Score: 162.5 bits (410), Expect = 2.0e-40 Identity = 74/114 (64.91%), Postives = 96/114 (84.21%), Query Frame = 0
BLAST of CmoCh08G004870 vs. TAIR 10
Match: AT2G05630.1 (Ubiquitin-like superfamily protein ) HSP 1 Score: 143.3 bits (360), Expect = 1.3e-34 Identity = 65/113 (57.52%), Postives = 90/113 (79.65%), Query Frame = 0
BLAST of CmoCh08G004870 vs. TAIR 10
Match: AT1G62040.1 (Ubiquitin-like superfamily protein ) HSP 1 Score: 138.3 bits (347), Expect = 4.1e-33 Identity = 66/113 (58.41%), Postives = 87/113 (76.99%), Query Frame = 0
BLAST of CmoCh08G004870 vs. TAIR 10
Match: AT1G62040.2 (Ubiquitin-like superfamily protein ) HSP 1 Score: 138.3 bits (347), Expect = 4.1e-33 Identity = 66/113 (58.41%), Postives = 87/113 (76.99%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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