CmoCh08G003870 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh08G003870
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Unknown protein
Location	Cmo_Chr08: 2404039 .. 2405000 (+)
RNA-Seq Expression	CmoCh08G003870
Synteny	CmoCh08G003870

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACGTTGAACTTCTTCTCTGCAACTTGATGATGATCCGCCGTCGTCTGTACGATGTTCCGGCGAAGTATTCCAGCAAGAGAAGTGGAAGCCCCGCGGTGAACGGCGGCGGAAGTTGGAAGGGATTCGAAGAACAAGAGAAGAGCGATAAGAGCAATGGAAAGTAGGGCTTTAATCGCTGCCATTAATTTTCTTTGAGTATTGTTTGAGAGAGGGAAGAACGATTGTATGCATTTATATGGAAATGCTTGGGAAGATCAAAGACGAGTATCGAATTTCCGCCGGAATTGACGATGGATCCCGGCGGCTATAGCAGGTTTTTGAATTCTTTGTTTATTTCTTTATTTCTTTCCTTCTAAGAAGTTTCTATATAAATGAATTGATACATCTTGCCAAATTCTCAATTTCCTGGATGAAGGCAAGAGCCTGGTTATGCAGTGGAGGCCACGAAATGAACGAATTAGAGTCTCGTGGTGGGACCGGGATTTGGACGGGACCGAGATTATAATCCTGTCCCGGGCCCCATCTATCTCACAGGTAAAAAAAAGTTCTTCACTTCTCCTTTTTCTGTCTAAATGGGAAATCACCTTTTTGTTTGAGGTCAATTGACTGGCTGAAATTCAAAGGAATTGACGGGCCCGCACAAGGTGTGGCGCATGTGGTTTAATTCCATGCAAAGGTAAGAACTTTATCACGGCTTGACATGCCGCGAATCCTTTTGAAAGAGAGGAGTGCCTTCGAGAACGCAGACATAGGTGATGCAGAGAGGAGTGCCTTCAAGAACGCGGACACAGGTGGTGCAGAGAGGAGTGCCTTCAAGAACGCGGACACAGGTGGTGCAGAGAGGAGTGCCTTCAAGAACGCGGACACCGGTAGTGCAAAGAGGAGTGCCTTCAAGAACGCGGACACCGGTGGTGCAAAGAGGAGTGCCTTCAAGAATGCGGAAACAGGTGGTGCATGA

mRNA sequence

ATGAACGTTGAACTTCTTCTCTGCAACTTGATGATGATCCGCCGTCGTCTGTACGATGTTCCGGCGAAGTATTCCAGCAAGAGAAGTGGAAGCCCCGCGGTGAACGGCGGCGGAAGTTGGAAGGGATTCGAAGAACAAGAGAAGAGCGATAAGAGCAATGGAAAATCAAAGACGAGTATCGAATTTCCGCCGGAATTGACGATGGATCCCGGCGGCTATAGCAGAACTTTATCACGGCTTGACATGCCGCGAATCCTTTTGAAAGAGAGGAGTGCCTTCGAGAACGCAGACATAGGTGATGCAGAGAGGAGTGCCTTCAAGAACGCGGACACAGGTGGTGCAGAGAGGAGTGCCTTCAAGAACGCGGACACAGGTGGTGCAGAGAGGAGTGCCTTCAAGAACGCGGACACCGGTAGTGCAAAGAGGAGTGCCTTCAAGAACGCGGACACCGGTGGTGCAAAGAGGAGTGCCTTCAAGAATGCGGAAACAGGTGGTGCATGA

Coding sequence (CDS)

ATGAACGTTGAACTTCTTCTCTGCAACTTGATGATGATCCGCCGTCGTCTGTACGATGTTCCGGCGAAGTATTCCAGCAAGAGAAGTGGAAGCCCCGCGGTGAACGGCGGCGGAAGTTGGAAGGGATTCGAAGAACAAGAGAAGAGCGATAAGAGCAATGGAAAATCAAAGACGAGTATCGAATTTCCGCCGGAATTGACGATGGATCCCGGCGGCTATAGCAGAACTTTATCACGGCTTGACATGCCGCGAATCCTTTTGAAAGAGAGGAGTGCCTTCGAGAACGCAGACATAGGTGATGCAGAGAGGAGTGCCTTCAAGAACGCGGACACAGGTGGTGCAGAGAGGAGTGCCTTCAAGAACGCGGACACAGGTGGTGCAGAGAGGAGTGCCTTCAAGAACGCGGACACCGGTAGTGCAAAGAGGAGTGCCTTCAAGAACGCGGACACCGGTGGTGCAAAGAGGAGTGCCTTCAAGAATGCGGAAACAGGTGGTGCATGA

Protein sequence

MNVELLLCNLMMIRRRLYDVPAKYSSKRSGSPAVNGGGSWKGFEEQEKSDKSNGKSKTSIEFPPELTMDPGGYSRTLSRLDMPRILLKERSAFENADIGDAERSAFKNADTGGAERSAFKNADTGGAERSAFKNADTGSAKRSAFKNADTGGAKRSAFKNAETGGA

Homology

[Close]

BLAST of CmoCh08G003870 vs. ExPASy TrEMBL
Match: A0A2I0U5W7 (Uncharacterized protein OS=Limosa lapponica baueri OX=1758121 GN=llap_8235 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 6.0e-06
Identity = 45/101 (44.55%), Postives = 51/101 (50.50%), Query Frame = 0


Query: 64  PELTMDPGGYSRTLSRLDMPRILLKERSAFENADIGDAERSAFKNADTGGAERSAFKNAD 123
           P L M  G  S+T      P +++  RSA  N D  D  RSA  N DTG   RSA  N D
Sbjct: 12  PALVMMAGLLSQT------PTLVMTARSAIPNPDTSDDGRSAISNPDTGDDHRSAIPNPD 71

Query: 124 TGGAERSAFKNADTGSAKRSAFKNADTGGAKRSAFKNAETG 165
           TG   RS   + DTG   RSA  N DTG   RSA  N +TG
Sbjct: 72  TGDDGRSTIPDPDTGDDGRSATPNPDTGDDGRSATPNPDTG 106

[Close]

BLAST of CmoCh08G003870 vs. ExPASy TrEMBL
Match: A0A401TQR1 (Uncharacterized protein (Fragment) OS=Chiloscyllium punctatum OX=137246 GN=chiPu_0029002 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 7.4e-04
Identity = 34/77 (44.16%), Postives = 43/77 (55.84%), Query Frame = 0


Query: 89  ERSAFENADIGDAERSAFKNADTGGAERSAFKNADTGGAERSAFKNADTGSAKRSAFKNA 148
           ER   ENA++G  ER    NA+T G ER    NA+TGG E    +NA+TG+ +     N 
Sbjct: 16  EREDDENAEVGSVEREKDGNAETSGVEREDDGNAETGGVESEDDRNAETGAVEMEDDGNT 75

Query: 149 DTGGAKRSAFKNAETGG 166
           +TGG KR    N ET G
Sbjct: 76  ETGGTKREDDGNTETSG 92

[Close]

BLAST of CmoCh08G003870 vs. NCBI nr
Match: PKU41458.1 (hypothetical protein llap_8235 [Limosa lapponica baueri])

HSP 1 Score: 60.8 bits (146), Expect = 1.2e-05
Identity = 45/101 (44.55%), Postives = 51/101 (50.50%), Query Frame = 0


Query: 64  PELTMDPGGYSRTLSRLDMPRILLKERSAFENADIGDAERSAFKNADTGGAERSAFKNAD 123
           P L M  G  S+T      P +++  RSA  N D  D  RSA  N DTG   RSA  N D
Sbjct: 12  PALVMMAGLLSQT------PTLVMTARSAIPNPDTSDDGRSAISNPDTGDDHRSAIPNPD 71

Query: 124 TGGAERSAFKNADTGSAKRSAFKNADTGGAKRSAFKNAETG 165
           TG   RS   + DTG   RSA  N DTG   RSA  N +TG
Sbjct: 72  TGDDGRSTIPDPDTGDDGRSATPNPDTGDDGRSATPNPDTG 106

[Close]

BLAST of CmoCh08G003870 vs. NCBI nr
Match: XP_037287823.1 (GATA zinc finger domain-containing protein 14-like [Rhipicephalus microplus])

HSP 1 Score: 56.6 bits (135), Expect = 2.3e-04
Identity = 31/78 (39.74%), Postives = 48/78 (61.54%), Query Frame = 0


Query: 89  ERSAFENADIGDAERSAFKNADTGGAERSAFKNADTGGAERSAFKNADTGSAKRSAFKNA 148
           +RS + NA+  +A+RS + NA+   A+RS + NA+   A+RS + NA+  +A RS + NA
Sbjct: 134 DRSEYANAENANADRSEYANAENANADRSEYANAENANADRSEYSNAENANADRSEYSNA 193

Query: 149 DTGGAKRSAFKNAETGGA 167
           +   A RS + NAE   A
Sbjct: 194 ENASADRSEYANAENANA 211

The following BLAST results are available for this feature:

BLAST of CmoCh08G003870 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh08G003870 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2I0U5W7	6.0e-06	44.55	Uncharacterized protein OS=Limosa lapponica baueri OX=1758121 GN=llap_8235 PE=4 ...	[more]
A0A401TQR1	7.4e-04	44.16	Uncharacterized protein (Fragment) OS=Chiloscyllium punctatum OX=137246 GN=chiPu...	[more]

BLAST of CmoCh08G003870 vs. NCBI nr


Match Name	E-value	Identity	Description
PKU41458.1	1.2e-05	44.55	hypothetical protein llap_8235 [Limosa lapponica baueri]	[more]
XP_037287823.1	2.3e-04	39.74	GATA zinc finger domain-containing protein 14-like [Rhipicephalus microplus]	[more]

BLAST of CmoCh08G003870 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 98..166
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 24..76

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh08G003870.1	CmoCh08G003870.1	mRNA