CmoCh07G009650 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh07G009650
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
Description50S ribosomal protein L16, chloroplastic
LocationCmo_Chr07: 4723929 .. 4726043 (+)
RNA-Seq ExpressionCmoCh07G009650
SyntenyCmoCh07G009650
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATCGAGAGTCTTTCAGAAGGTGATTGAAGTAGTTCTGTCTCATTCATCTTTCATTAGATTCTCCCTTCAAACATAGGTTCTTCTCATGCTCATGCAGCTCCTTTTCCTATTCCAGCTTACTTATGACGCTGCTTATCCCCTACCTTTTTCACTCAGTGGTAGAGTAACGCTATGGTAAGGCATAAGTCATCGGTTCAAAACAGCCCTTTTCTTGCATTTTCCTATTGATTTGGTCTGGGTCTGTGACATCAGATAGCCAGCAATGGAAGACTGAGCCAAAGAGCCTGAATCTAACTAGTTGATGGAGTCTGATTCAAAGAGTTTTTTTCGCATTTGGGCAGCGACAGCCCCTTATTATTTGAAGAAGGTTGAGCAGTTCTTGGGATGAACTCTCCTCCGTGACGACGACCAACTTGATTGAAAATCACGATTTGAATGTAACTCGGGAAAAGAGAGAACAAGCAGAACTGCTTTATCTGTTATATGAGAGGACGGCTGCCACTTCCGTATTACCATTGATTTAGACAATCCCCGATCCTTACTAGACTAGATAAGGGGTCAGGCTGGTTCTGAACGCCGCGTAACATCATCTTCGGTTTGACCCCTATATAGGATAGAATCAATTAATTCTTGGTCCGACAGAGTTCCAGAAGTAGGAGTTTCGGCTTGACTTTCAACACTCGGCGGACTTCAAAAGCCACCTACAGACGCTTTACGCCCAATCGATACCTCTTTTCTGTGTAGTCTTTTTTTAGGGGCTAGTAAGTATGTATAGGGTTTTCCATTAGTCTCAGTATCTGGGCGGTAGGATAATAGTATCAATAAGAGAAGTGTGCTTTTCCATTCAAAATAGAAAGAAGGCTAGCCAGTTTAGCTATGAGAAATCCACCAATCCACATGTGATGTGTGAACAATGAAAGTTGTGTACCATAGTCAGTAGCGGAATCCAGTTTTTTATCCGCCTTCCATTATCCCGCCCCGCTTGAGACTTTCTTTTTAGCCCAGCAATGGCTTAACTACGTCAAGTGGTACTACATGGTTTCAGTATCTCCAGGCGTAACCATTCAGGATCTCTTATACGCACCATTCGTGAACCGGAAATGGCAGGTTGAATCGACCCGGGAGAAAGAAGAAGAAGACAAAGACGAAGACGGTGCCAAGATCATCAAATGAGTGAAAGAAAAGAGATAAGATACTGAACCCACCTATTTACCTCGTGAAAGAAGGAGTGAAAGCAAGAAAGGATCAGATCAATCAGCCGAGGGGCAGGCAATGGAATTGTGAAACCGAGTTTACGAGGTGAGGGAGAACAAAGACCTATTCTATTTACCTCGTTCGGAAAGAAAGGGGCGAAGCAAGCAGTGAGAGACCGATAGGGTTTTCTTAGGTTACACAGTGTTTGAAGGATTGAATATGCGAGTTCTGGATCGTTAATCTTTCGTCTTGACTTACTCTTCCGGAGTTAAGCTGACTCTCCCGTAAAGTCTCATTCATCAATAGGAGCTTGAGGTCATGCAATCGTATTTGCTTCGGTAGATACGCTATTCAAGCACTTGAACCCGCTTGGATCACATCTAGACAAATCGAAGCGGGACGAAGGGCAATGACACGAAATGCACGACGCGGCGGAAAAATATGGGTACGTATATTTCCAGACAAACCCGTTACACTAAGACCCACAGAAACACGTATGGGTTCAGGGAAAGGATCCCCCGAATATTGGGTAGCTGTTGTTAAACCAGGTAGAATACTTTATNGCAATCGTATTTGCTTCGGTAGATACGCTATTCAAGCACTTGAACCCGCTTGGATCACATCTAGACAAATCGAAGCGGGACGAAGGGCAATGACACGAAATGCACGACGCGGCGGAAAAATATGGGTACGTATATTTCCAGACAAACGGGAATGAAAAAAAATGGATCCACTTTCATTTGCATTTGGTATTTTGGCTTAAAGTCTTTGACTCCTCGATACTCAATCAAATCCTCTTTTTTGAGGATTGAATGCAGCCGGAAGATGGGCTTTTTCTTCTTTTCTTTTTCGGTATGCCGCTCCGCGATCAAGGAGCGAAGCTACTCGACGAGAAGGGGAGAGGAGCGAAGCTATGA

mRNA sequence

ATGAATCGAGAGTCTTTCAGAAGGAGCTTGAGGTCATGCAATCGTATTTGCTTCGGTAGATACGCTATTCAAGCACTTGAACCCGCTTGGATCACATCTAGACAAATCGAAGCGGGACGAAGGGCAATGACACGAAATGCACGACGCGGCGGAAAAATATGGGTACGTATATTTCCAGACAAACCCGTTACACTAAGACCCACAGAAACACGTATGGGTTCAGGGAAAGGATCCCCCGAATATTGGGTAGCTGTTGTTAAACCAGGTAGAATACTTTATNGCAATCGTATTTGCTTCGGTAGATACGCTATTCAAGCACTTGAACCCGCTTGGATCACATCTAGACAAATCGAAGCGGGACGAAGGGCAATGACACGAAATGCACGACGCGGCGGAAAAATATGGCCGGAAGATGGGCTTTTTCTTCTTTTCTTTTTCGGTATGCCGCTCCGCGATCAAGGAGCGAAGCTACTCGACGAGAAGGGGAGAGGAGCGAAGCTATGA

Coding sequence (CDS)

ATGAATCGAGAGTCTTTCAGAAGGAGCTTGAGGTCATGCAATCGTATTTGCTTCGGTAGATACGCTATTCAAGCACTTGAACCCGCTTGGATCACATCTAGACAAATCGAAGCGGGACGAAGGGCAATGACACGAAATGCACGACGCGGCGGAAAAATATGGGTACGTATATTTCCAGACAAACCCGTTACACTAAGACCCACAGAAACACGTATGGGTTCAGGGAAAGGATCCCCCGAATATTGGGTAGCTGTTGTTAAACCAGGTAGAATACTTTATNGCAATCGTATTTGCTTCGGTAGATACGCTATTCAAGCACTTGAACCCGCTTGGATCACATCTAGACAAATCGAAGCGGGACGAAGGGCAATGACACGAAATGCACGACGCGGCGGAAAAATATGGCCGGAAGATGGGCTTTTTCTTCTTTTCTTTTTCGGTATGCCGCTCCGCGATCAAGGAGCGAAGCTACTCGACGAGAAGGGGAGAGGAGCGAAGCTATGA

Protein sequence

MNRESFRRSLRSCNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRILYXNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWPEDGLFLLFFFGMPLRDQGAKLLDEKGRGAKL
Homology
[Close]
BLAST of CmoCh07G009650 vs. ExPASy Swiss-Prot
Match: B1NWI7 (50S ribosomal protein L16, chloroplastic OS=Manihot esculenta OX=3983 GN=rpl16 PE=3 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 1.1e-41
Identity = 79/80 (98.75%), Postives = 80/80 (100.00%), Query Frame = 0 

Query: 14  NRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMG 73
           NRICFGRYA+QALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMG
Sbjct: 25  NRICFGRYALQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMG 84

Query: 74  SGKGSPEYWVAVVKPGRILY 94
           SGKGSPEYWVAVVKPGRILY
Sbjct: 85  SGKGSPEYWVAVVKPGRILY 104

[Close]
BLAST of CmoCh07G009650 vs. ExPASy Swiss-Prot
Match: Q4VZN1 (50S ribosomal protein L16, chloroplastic OS=Cucumis sativus OX=3659 GN=rpl16 PE=3 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 3.3e-41
Identity = 79/80 (98.75%), Postives = 79/80 (98.75%), Query Frame = 0 

Query: 14  NRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMG 73
           N ICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMG
Sbjct: 25  NSICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMG 84

Query: 74  SGKGSPEYWVAVVKPGRILY 94
           SGKGSPEYWVAVVKPGRILY
Sbjct: 85  SGKGSPEYWVAVVKPGRILY 104

[Close]
BLAST of CmoCh07G009650 vs. ExPASy Swiss-Prot
Match: A0ZZ72 (50S ribosomal protein L16, chloroplastic OS=Gossypium barbadense OX=3634 GN=rpl16 PE=3 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 7.3e-41
Identity = 77/80 (96.25%), Postives = 79/80 (98.75%), Query Frame = 0 

Query: 14  NRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMG 73
           NRICFGRYA+QALEPAWITSRQIEAGRRAMTRN RRGGKIWVRIFPDKPVT+RPTETRMG
Sbjct: 25  NRICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTVRPTETRMG 84

Query: 74  SGKGSPEYWVAVVKPGRILY 94
           SGKGSPEYWVAVVKPGRILY
Sbjct: 85  SGKGSPEYWVAVVKPGRILY 104

[Close]
BLAST of CmoCh07G009650 vs. ExPASy Swiss-Prot
Match: Q2L940 (50S ribosomal protein L16, chloroplastic OS=Gossypium hirsutum OX=3635 GN=rpl16 PE=3 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 7.3e-41
Identity = 77/80 (96.25%), Postives = 79/80 (98.75%), Query Frame = 0 

Query: 14  NRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMG 73
           NRICFGRYA+QALEPAWITSRQIEAGRRAMTRN RRGGKIWVRIFPDKPVT+RPTETRMG
Sbjct: 25  NRICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTVRPTETRMG 84

Query: 74  SGKGSPEYWVAVVKPGRILY 94
           SGKGSPEYWVAVVKPGRILY
Sbjct: 85  SGKGSPEYWVAVVKPGRILY 104

[Close]
BLAST of CmoCh07G009650 vs. ExPASy Swiss-Prot
Match: Q0ZIY1 (50S ribosomal protein L16, chloroplastic OS=Vitis vinifera OX=29760 GN=rpl16 PE=3 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 7.3e-41
Identity = 77/80 (96.25%), Postives = 79/80 (98.75%), Query Frame = 0 

Query: 14  NRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMG 73
           NRICFGRYA+QALEPAWITSRQIEAGRRAMTRN RRGGKIWVRIFPDKPVT+RPTETRMG
Sbjct: 25  NRICFGRYALQALEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTVRPTETRMG 84

Query: 74  SGKGSPEYWVAVVKPGRILY 94
           SGKGSPEYWVAVVKPGRILY
Sbjct: 85  SGKGSPEYWVAVVKPGRILY 104

[Close]
BLAST of CmoCh07G009650 vs. ExPASy TrEMBL
Match: A0A2G2WAC2 (50S ribosomal protein L16, chloroplastic OS=Capsicum baccatum OX=33114 GN=CQW23_16167 PE=3 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 1.6e-43
Identity = 93/122 (76.23%), Postives = 95/122 (77.87%), Query Frame = 0 

Query: 14  NRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMG 73
           N I FG+YA+QALEPAWITSRQIEAGRRAMTR ARRGGKIWVRIFPDKPVTLRP ETRMG
Sbjct: 9   NHISFGKYALQALEPAWITSRQIEAGRRAMTRIARRGGKIWVRIFPDKPVTLRPAETRMG 68

Query: 74  SGKGSPEYWVAVVKPGRILYXNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGK 133
           SGKGSPEYW                       ALEPAWITSRQIEAGRRAMTRNARRGGK
Sbjct: 69  SGKGSPEYW-----------------------ALEPAWITSRQIEAGRRAMTRNARRGGK 107

Query: 134 IW 136
           IW
Sbjct: 129 IW 107

[Close]
BLAST of CmoCh07G009650 vs. ExPASy TrEMBL
Match: A0A6H0EU89 (50S ribosomal protein L16, chloroplastic OS=Trichosanthes kirilowii OX=3677 GN=rpl16 PE=3 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 2.4e-39
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0 

Query: 14  NRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMG 73
           NRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMG
Sbjct: 25  NRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMG 84

Query: 74  SGKGSPEYWVAVVKPGRILY 94
           SGKGSPEYWVAVVKPGRILY
Sbjct: 85  SGKGSPEYWVAVVKPGRILY 104

[Close]
BLAST of CmoCh07G009650 vs. ExPASy TrEMBL
Match: A0A1P8LEA5 (Ribosomal protein L16 OS=Citrullus mucosospermus OX=519315 GN=rpl16 PE=3 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 2.4e-39
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0 

Query: 14 NRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMG 73
          NRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMG
Sbjct: 9  NRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMG 68

Query: 74 SGKGSPEYWVAVVKPGRILY 94
          SGKGSPEYWVAVVKPGRILY
Sbjct: 69 SGKGSPEYWVAVVKPGRILY 88

[Close]
BLAST of CmoCh07G009650 vs. ExPASy TrEMBL
Match: A0A6H0EQG8 (50S ribosomal protein L16, chloroplastic OS=Indofevillea khasiana OX=383665 GN=rpl16 PE=3 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 2.4e-39
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0 

Query: 14  NRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMG 73
           NRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMG
Sbjct: 25  NRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMG 84

Query: 74  SGKGSPEYWVAVVKPGRILY 94
           SGKGSPEYWVAVVKPGRILY
Sbjct: 85  SGKGSPEYWVAVVKPGRILY 104

[Close]
BLAST of CmoCh07G009650 vs. ExPASy TrEMBL
Match: A0A6M3RTV2 (50S ribosomal protein L16, chloroplastic OS=Trichosanthes kirilowii var. japonica OX=61011 GN=rpl16 PE=3 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 2.4e-39
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0 

Query: 14  NRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMG 73
           NRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMG
Sbjct: 25  NRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMG 84

Query: 74  SGKGSPEYWVAVVKPGRILY 94
           SGKGSPEYWVAVVKPGRILY
Sbjct: 85  SGKGSPEYWVAVVKPGRILY 104

[Close]
BLAST of CmoCh07G009650 vs. NCBI nr
Match: PHT42142.1 (50S ribosomal protein L16, chloroplastic [Capsicum baccatum])

HSP 1 Score: 185.7 bits (470), Expect = 3.4e-43
Identity = 93/122 (76.23%), Postives = 95/122 (77.87%), Query Frame = 0 

Query: 14  NRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMG 73
           N I FG+YA+QALEPAWITSRQIEAGRRAMTR ARRGGKIWVRIFPDKPVTLRP ETRMG
Sbjct: 9   NHISFGKYALQALEPAWITSRQIEAGRRAMTRIARRGGKIWVRIFPDKPVTLRPAETRMG 68

Query: 74  SGKGSPEYWVAVVKPGRILYXNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGK 133
           SGKGSPEYW                       ALEPAWITSRQIEAGRRAMTRNARRGGK
Sbjct: 69  SGKGSPEYW-----------------------ALEPAWITSRQIEAGRRAMTRNARRGGK 107

Query: 134 IW 136
           IW
Sbjct: 129 IW 107

[Close]
BLAST of CmoCh07G009650 vs. NCBI nr
Match: YP_009317423.1 (ribosomal protein L16 [Coccinia grandis] >AOX48729.1 ribosomal protein L16 [Coccinia grandis] >AOX48815.1 ribosomal protein L16 [Coccinia grandis])

HSP 1 Score: 171.8 bits (434), Expect = 5.0e-39
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0 

Query: 14  NRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMG 73
           NRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMG
Sbjct: 25  NRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMG 84

Query: 74  SGKGSPEYWVAVVKPGRILY 94
           SGKGSPEYWVAVVKPGRILY
Sbjct: 85  SGKGSPEYWVAVVKPGRILY 104

[Close]
BLAST of CmoCh07G009650 vs. NCBI nr
Match: APW82670.1 (ribosomal protein L16 [Citrullus lanatus subsp. vulgaris])

HSP 1 Score: 171.8 bits (434), Expect = 5.0e-39
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0 

Query: 14 NRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMG 73
          NRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMG
Sbjct: 9  NRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMG 68

Query: 74 SGKGSPEYWVAVVKPGRILY 94
          SGKGSPEYWVAVVKPGRILY
Sbjct: 69 SGKGSPEYWVAVVKPGRILY 88

[Close]
BLAST of CmoCh07G009650 vs. NCBI nr
Match: YP_009326027.1 (ribosomal protein L16 [Citrullus lanatus] >YP_009348069.1 ribosomal protein L16 [Citrullus mucosospermus] >YP_009420832.1 ribosomal protein L16 [Citrullus colocynthis] >YP_009431680.1 ribosomal protein L16 [Citrullus rehmii] >YP_009447488.1 ribosomal protein L16 [Cucurbita maxima] >YP_009456183.1 ribosomal protein L16 [Lagenaria siceraria] >APW82925.1 ribosomal protein L16 [Citrullus lanatus subsp. vulgaris] >QNM38568.1 ribosomal protein L16 [Lagenaria siceraria var. microcarpa] >APD52518.1 ribosomal protein L16 [Citrullus lanatus] >APW82755.1 ribosomal protein L16 [Citrullus mucosospermus] >APW82840.1 ribosomal protein L16 [Citrullus mucosospermus])

HSP 1 Score: 171.8 bits (434), Expect = 5.0e-39
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0 

Query: 14 NRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMG 73
          NRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMG
Sbjct: 9  NRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMG 68

Query: 74 SGKGSPEYWVAVVKPGRILY 94
          SGKGSPEYWVAVVKPGRILY
Sbjct: 69 SGKGSPEYWVAVVKPGRILY 88

[Close]
BLAST of CmoCh07G009650 vs. NCBI nr
Match: YP_009752280.1 (ribosomal protein L16 [Trichosanthes baviensis] >YP_009752449.1 ribosomal protein L16 [Trichosanthes tricuspidata] >YP_009752618.1 ribosomal protein L16 [Trichosanthes homophylla] >YP_009753211.1 ribosomal protein L16 [Trichosanthes truncata] >YP_009753657.1 ribosomal protein L16 [Trichosanthes wallichiana] >YP_009753742.1 ribosomal protein L16 [Trichosanthes nervifolia] >YP_009753826.1 ribosomal protein L16 [Trichosanthes pilosa] >YP_009753911.1 ribosomal protein L16 [Trichosanthes lobata] >QJD26507.1 ribosomal protein L16 [Trichosanthes kirilowii var. japonica] >QJD26681.1 ribosomal protein L16 [Trichosanthes rosthornii] >QIT04254.1 ribosomal protein L16 [Trichosanthes baviensis] >QIT04676.1 ribosomal protein L16 [Trichosanthes wallichiana] >QIT04845.1 ribosomal protein L16 [Trichosanthes tricuspidata])

HSP 1 Score: 171.8 bits (434), Expect = 5.0e-39
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0 

Query: 14  NRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMG 73
           NRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMG
Sbjct: 25  NRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMG 84

Query: 74  SGKGSPEYWVAVVKPGRILY 94
           SGKGSPEYWVAVVKPGRILY
Sbjct: 85  SGKGSPEYWVAVVKPGRILY 104

[Close]
BLAST of CmoCh07G009650 vs. TAIR 10
Match: ATCG00790.1 (ribosomal protein L16 )

HSP 1 Score: 163.7 bits (413), Expect = 1.3e-40
Identity = 74/80 (92.50%), Postives = 77/80 (96.25%), Query Frame = 0 

Query: 14  NRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDKPVTLRPTETRMG 73
           NRICFGRYA+Q LEPAWITSRQIEAGRRAMTRN RRGGKIWVRIFPDKPVT+RP ETRMG
Sbjct: 25  NRICFGRYALQTLEPAWITSRQIEAGRRAMTRNVRRGGKIWVRIFPDKPVTVRPAETRMG 84

Query: 74  SGKGSPEYWVAVVKPGRILY 94
           SGKGSPEYWVAVVKPG+ILY
Sbjct: 85  SGKGSPEYWVAVVKPGKILY 104

[Close]
BLAST of CmoCh07G009650 vs. TAIR 10
Match: AT2G28830.1 (PLANT U-BOX 12 )

HSP 1 Score: 122.9 bits (307), Expect = 2.5e-28
Identity = 60/92 (65.22%), Postives = 70/92 (76.09%), Query Frame = 0 

Query: 2   NRESFRRSLRSCNRICFGRYAIQALEPAWITSRQIEAGRRAMTRNARRGGKIWVRIFPDK 61
           +R    + + S   IC  RYA+Q LEPAWITSRQIEAGRRAMTRN  RG  + V IF DK
Sbjct: 841 HRGRINKGVSSQGYIC-SRYALQTLEPAWITSRQIEAGRRAMTRNIGRGLTVRVHIFADK 900

Query: 62  PVTLRPTETRMGSGKGSPEYWVAVVKPGRILY 94
           PVT+RP ETRMG GKG+P +WVAVVKPG+I+Y
Sbjct: 901 PVTVRPPETRMGRGKGAPAFWVAVVKPGKIIY 931

[Close]
BLAST of CmoCh07G009650 vs. TAIR 10
Match: ATMG00080.1 (ribosomal protein L16 )

HSP 1 Score: 79.7 bits (195), Expect = 2.4e-15
Identity = 42/96 (43.75%), Postives = 56/96 (58.33%), Query Frame = 0 

Query: 8   RSLRSC----NRICFGRYAIQALEPAWITSRQIEAGR--------RAMTRNARRGGKIWV 67
           R  R C     ++ FGRY  ++ +   ++ R IEA R        RAM+   RR GKIWV
Sbjct: 51  RCSRGCKPDGTKLGFGRYGTKSCKAGRLSYRAIEAARRAIIGHFHRAMSGQFRRNGKIWV 110

Query: 68  RIFPDKPVTLRPTETRMGSGKGSPEYWVAVVKPGRI 92
           R+F D P+T +PTE RMG GKG+P  W+A V  G+I
Sbjct: 111 RVFADLPITGKPTEVRMGRGKGNPTGWIARVSTGQI 146

The following BLAST results are available for this feature:
BLAST of CmoCh07G009650 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
B1NWI71.1e-4198.7550S ribosomal protein L16, chloroplastic OS=Manihot esculenta OX=3983 GN=rpl16 P... [more]
Q4VZN13.3e-4198.7550S ribosomal protein L16, chloroplastic OS=Cucumis sativus OX=3659 GN=rpl16 PE=... [more]
A0ZZ727.3e-4196.2550S ribosomal protein L16, chloroplastic OS=Gossypium barbadense OX=3634 GN=rpl1... [more]
Q2L9407.3e-4196.2550S ribosomal protein L16, chloroplastic OS=Gossypium hirsutum OX=3635 GN=rpl16 ... [more]
Q0ZIY17.3e-4196.2550S ribosomal protein L16, chloroplastic OS=Vitis vinifera OX=29760 GN=rpl16 PE=... [more]
BLAST of CmoCh07G009650 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A2G2WAC21.6e-4376.2350S ribosomal protein L16, chloroplastic OS=Capsicum baccatum OX=33114 GN=CQW23_... [more]
A0A6H0EU892.4e-39100.0050S ribosomal protein L16, chloroplastic OS=Trichosanthes kirilowii OX=3677 GN=r... [more]
A0A1P8LEA52.4e-39100.00Ribosomal protein L16 OS=Citrullus mucosospermus OX=519315 GN=rpl16 PE=3 SV=1[more]
A0A6H0EQG82.4e-39100.0050S ribosomal protein L16, chloroplastic OS=Indofevillea khasiana OX=383665 GN=r... [more]
A0A6M3RTV22.4e-39100.0050S ribosomal protein L16, chloroplastic OS=Trichosanthes kirilowii var. japonic... [more]
BLAST of CmoCh07G009650 vs. NCBI nr
Match NameE-valueIdentityDescription
PHT42142.13.4e-4376.2350S ribosomal protein L16, chloroplastic [Capsicum baccatum][more]
YP_009317423.15.0e-39100.00ribosomal protein L16 [Coccinia grandis] >AOX48729.1 ribosomal protein L16 [Cocc... [more]
APW82670.15.0e-39100.00ribosomal protein L16 [Citrullus lanatus subsp. vulgaris][more]
YP_009326027.15.0e-39100.00ribosomal protein L16 [Citrullus lanatus] >YP_009348069.1 ribosomal protein L16 ... [more]
YP_009752280.15.0e-39100.00ribosomal protein L16 [Trichosanthes baviensis] >YP_009752449.1 ribosomal protei... [more]
BLAST of CmoCh07G009650 vs. TAIR 10
Match NameE-valueIdentityDescription
ATCG00790.11.3e-4092.50ribosomal protein L16 [more]
AT2G28830.12.5e-2865.22PLANT U-BOX 12 [more]
ATMG00080.12.4e-1543.75ribosomal protein L16 [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000114Ribosomal protein L16PRINTSPR00060RIBOSOMALL16coord: 31..42
score: 71.5
coord: 77..106
score: 38.8
coord: 13..25
score: 41.85
coord: 47..76
score: 67.87
IPR000114Ribosomal protein L16TIGRFAMTIGR01164TIGR01164coord: 11..94
e-value: 6.4E-40
score: 134.1
IPR000114Ribosomal protein L16PANTHERPTHR1222050S/60S RIBOSOMAL PROTEIN L16coord: 94..134
coord: 12..94
IPR016180Ribosomal protein L10e/L16PFAMPF00252Ribosomal_L16coord: 13..93
e-value: 2.2E-31
score: 108.6
coord: 94..135
e-value: 8.7E-9
score: 35.5
IPR016180Ribosomal protein L10e/L16CDDcd01433Ribosomal_L16_L10ecoord: 14..93
e-value: 1.95422E-39
score: 127.608
IPR016180Ribosomal protein L10e/L16CDDcd01433Ribosomal_L16_L10ecoord: 94..134
e-value: 6.53057E-13
score: 59.8127
IPR036920Ribosomal protein L10e/L16 superfamilyGENE3D3.90.1170.10Ribosomal protein L10e/L16coord: 94..137
e-value: 8.6E-13
score: 50.4
coord: 2..93
e-value: 1.2E-40
score: 141.3
IPR036920Ribosomal protein L10e/L16 superfamilySUPERFAMILY54686Ribosomal protein L16p/L10ecoord: 13..93
IPR036920Ribosomal protein L10e/L16 superfamilySUPERFAMILY54686Ribosomal protein L16p/L10ecoord: 94..135
IPR020798Ribosomal protein L16, conserved sitePROSITEPS00586RIBOSOMAL_L16_1coord: 48..59
IPR020798Ribosomal protein L16, conserved sitePROSITEPS00701RIBOSOMAL_L16_2coord: 71..82

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh07G009650.1CmoCh07G009650.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0009507 chloroplast
cellular_component GO:0005840 ribosome
molecular_function GO:0019843 rRNA binding
molecular_function GO:0003735 structural constituent of ribosome