CmoCh06G000310 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh06G000310
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	TFIIS N-terminal domain-containing protein
Location	Cmo_Chr06: 204842 .. 208523 (-)
RNA-Seq Expression	CmoCh06G000310
Synteny	CmoCh06G000310

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GAATGTTGGAGGGAGCCTAAACCCAGGTTTATTCTTTTAATTTCTTTCTAATTTCTTTCTAATTTCTAGAGAGAGAACCAAATCAAAGGAACCCTTCAATTCCCAATTCCATTGAAGAGAAGAAAGAAGAGATTAAGGTTTTGTTCCTATTTTCTCTTCTCTTCCATTTCCCATATTCTCGATATTTCTCCTACCAGGAAATCCCGGAACTTTTCCGGGATTAAACAAATACGAATACCAAACAAAAAAAAAAAACTCAGAAGTTTCTCTGTTACAACCTTCCAATTTTGAGCAACCCCTCATTGCAGGGCTTGGGTTTTATCAATCCCCTTCTTCTGTTTTTGATCCGATCCTTTCTTTTCACAAAACGAATATCTTCACACCACTACTCACTTTCATTTCGCTTCCGAACGGATGCAAGTTTGAGTGTTTGCGACTTTGTTGCTAACCATTTTATTTTTCTGGGAATCGGATTCTTGTGGTGCTGGATTAGTGTTGGGGAGGGGTTTTCTTTTCTGGGTGTTGTTCATTTTGGGGGATTTCGTCAATTCCCACCTCCAATCTTTTTTTGTTTTTCTTCGTATTTAGGTTTTTGTCCTTTGGAACTCTCACGGTGATGGAATTCCCACTTCGATTCTGAGTGGTTGTTTGAATTCCGTCCGTGTTCGATCGAGTTTGGTTTCTTCAGATTCCGATCATGTCCGCCAAGTCTGGGTCCTTGGACTACTGGAGGGATTACTTCCGGAATGCGAATTCGGATATTTTTAGCTTAATCGATTACGCAATCTTGGTGGCGGCTTCCGATTGTCCCAAGGAGTTCAGATTGAGGAGAGATCGAATTGCAGAGCAGTTGTTTTCATGCCGATTGACTCGCTGTTTGGGTTGCGACCGAGTGGAGCTGGCGGTGGCTGGCGATGTGGACGGCGAAACGGGTTTCAAGAGCGATTCTGCCGGAGATGGGCGTGCGTTTGAGGGCGGTGGGAGCAAAGAGAGCAAGGTTTACAGCAGTAGAGATGATGGAGGGGAGATGAATTTCAATCAGGTTAGCAATTATAGCTTTGGTGAAGCTGAAGCATTGACTGATGAAATTGAACAAGAATCTGAGATTGTCGGGGAGGTTTTGAGGATCAAAGAGATTCTCAATAATTTTGAAGAAGAGGTAATGAATGATTGTTTTGGGTCTTTACATTTTCTGGGATGTTCCTTTGTTTCTCATGTTGTGTGTTTCTTGTGCAGTCTGATTCAGTGTTGTTTGAATCCCTTAGAAGACTTGAATTGATGGCTCTATCAGTTGATGCCCTGCAGGTGATGGTTTGATTCTTCTGTTTGCTCTTGCAACTTTGGGGCAAGTTAAGTTTTGTTGGTTCTTCTTGTTTCTGATTGAGGATTTTTCTCTCTTTATCAGGCAACTGAGATTGGCAAGGCTGTTAATGGTCTTCGAAAGCATGGATCGAAGCGCATTCGCCATCTTGTTCGATTCCTTATCACGTACTAAATCTTGCCTTCAAACCTCAATCCCAAGTATACATGTTCTATGATGAATGCCCCAACTAAATTTGTTGTTGACACTCTATATGTCATCTTCCTTTGGATTTGTTCTTTAAAACTTACTCATTTCATTTTGAACATATAAGAATCAGTGTTTGTTCTCTCTTTTGACTGAGTTTTAATGAACAAAGAATCGTCTTCTTCGACCATGCAGCGTCCATTATTTTGTTTTTTGAGTGAGTGGAGAGCTTTTGTAGCTCATCTGTGCCTTTACAACTTGTTGCTCACTCAGGGAGTTCTCTGTTTTGCATAGCATATAAGGAAACCTCGTCTTTGATATCATTATAAATGGCTGCTTCTTGTTAGTTTACTTTGCTTGAGGGTAAAAGATCTACTTTATTGGTTGCAGAGAGTGGAAAGAAATGGTGGACATGTGGGTAAAAGCTACAGCTGCTGTTCATGGTAGAGTTCATTTTAGCTACACGTGCATCTATATCGGTTCATGCCAACTTTCGGATTTATTTACTGAGGAATGTTTTTGTTTTCCTGACAAAAAAGGTTCAGAAGTCACACCGGATTCGAAAAGTATGCCTGTATCTGAACAAGAAGAAGATGATTATGAAGATGGGCTTCCCTCTCCTCCTTTAGATGAAGCTGCATTTTTTACCACTCAGCCCACATCAATGGAGCTCTCACAAGTATGTCTCTATTTTCGAGTTGAATTGAGTTTGTATTCTCAAGAAAAGTTATCTACTTAATGTTGCATTGGTGGGTTCTAATCGACTGTATTTTACTTGCCATTCCATTCCCTTCCTTGGCGAAGTTCTTTGATGGCATGGACGATGATGGAAGTGAGTTCATTACGCAGTATCCTATGCTTTTCTCAATCACTTTCTTAGACTCTCCATTTCTTAGATTCATGATTACCAGTGGGGATATATGTTTCAGATCCTCGAAACAGTGGGGAGTTCGTCAAGAAGCGCGATAATGGAAGAAAAACATCGAGTGGCAGTCAAAACCCTATGAGGTGTAAACAACAAACCACTCGAGAGGTTAATGTGGTTGCTAAGGACAATAAGAGTCAAATGAAAGAACAAGTTGTGAAGCCAAACAAGCCACCGTCAAATGCAAATTCTGGGTTTTCGAGGCTGCAGAAGCCAAGCACCGTGCAGAAGGACAATCACGAGAAGTTGCAGCGTAAAGTGGAGAAGCCTACGATCCCAAAGAGGAGCCTACAAGATGTAAGTAGCTGAAGATTGTAAAGTTATTTGGGGGTTTGTCCTTTGTCCTTGTACCTGATTTTTTCTATTTGTTTCTACCAGAAGTTCAAGTGTTCGGATGAGGTTGCAGTTCAAGTGAAACTAGAAGCCACTAAGAGGAAACTGCAAGAGAGTTACCAACAAGCTGAAAACGGTATTTGCTTTGTTTTGTTTTCCATCTATGCTTTTATCCATTCTGATACCAGTTTCATAGGCAGTCTAAAAGCTTTCTTGCTGAATATTTGAAGTATCAATCAAACCAACTTTAGCTAAATATTTGCACCCGAACATAGTTTAACTGGTTAAGGCGGCACCCGAACATAGTTTAACTGGTTAAGGCGGCGTATATGACCAAAATGAGAGCACTTTTAAACACATTTCTGAAGTTGTTGAATATAACTAACTACACAAGTGCTGATTCATGGTGGTGTTTATTGAACAGCCAAAAAGCAGCGGACGATACAGGTTATGGAACTACACGATATTCCGAAGCAGGGAATGGGCCACAGAAATGTGCACCTAAAATCTGGAGGCCACAATCGGCATTGGACAAACGGGCGGCGTTAGGATGAAACGATAGTGAGGAACAAGACTGATACTTCCAGGATACTTTCCTGGTGACTTTCCACCCAGAATCAGGTGGAAGATCATATACTAAAAGCTCCCTGGCAAACGGTGTCTTGACCTACTCTACCTGCTTCAAGGTAAACAACAAGAAACTTGGTGTCACTGTGTTGTGCCAGAGAAGGCGATTCCGATTCAAAGGAGAATCGGAGATGGAAAAAAAAAGAAAAAAAAAAAAAGAAAAAAAAAAGAAAAAAAGAAAGAACGATTTCATAGTTGAAGTGCATTTTGAAGTACAGAGAATTTCTTCTTATGGAATTTGGGAGGCAAAATTATATAGCTTTTATGGGTGGTTGCTCAGGGAGTGTTGA

mRNA sequence

GAATGTTGGAGGGAGCCTAAACCCAGGTTTATTCTTTTAATTTCTTTCTAATTTCTTTCTAATTTCTAGAGAGAGAACCAAATCAAAGGAACCCTTCAATTCCCAATTCCATTGAAGAGAAGAAAGAAGAGATTAAGGTTTTGTTCCTATTTTCTCTTCTCTTCCATTTCCCATATTCTCGATATTTCTCCTACCAGGAAATCCCGGAACTTTTCCGGGATTAAACAAATACGAATACCAAACAAAAAAAAAAAACTCAGAAGTTTCTCTGTTACAACCTTCCAATTTTGAGCAACCCCTCATTGCAGGGCTTGGGTTTTATCAATCCCCTTCTTCTGTTTTTGATCCGATCCTTTCTTTTCACAAAACGAATATCTTCACACCACTACTCACTTTCATTTCGCTTCCGAACGGATGCAAGTTTGAGTGTTTGCGACTTTGTTGCTAACCATTTTATTTTTCTGGGAATCGGATTCTTGTGGTGCTGGATTAGTGTTGGGGAGGGGTTTTCTTTTCTGGGTGTTGTTCATTTTGGGGGATTTCGTCAATTCCCACCTCCAATCTTTTTTTGTTTTTCTTCGTATTTAGGTTTTTGTCCTTTGGAACTCTCACGGTGATGGAATTCCCACTTCGATTCTGAGTGGTTGTTTGAATTCCGTCCGTGTTCGATCGAGTTTGGTTTCTTCAGATTCCGATCATGTCCGCCAAGTCTGGGTCCTTGGACTACTGGAGGGATTACTTCCGGAATGCGAATTCGGATATTTTTAGCTTAATCGATTACGCAATCTTGGTGGCGGCTTCCGATTGTCCCAAGGAGTTCAGATTGAGGAGAGATCGAATTGCAGAGCAGTTGTTTTCATGCCGATTGACTCGCTGTTTGGGTTGCGACCGAGTGGAGCTGGCGGTGGCTGGCGATGTGGACGGCGAAACGGGTTTCAAGAGCGATTCTGCCGGAGATGGGCGTGCGTTTGAGGGCGGTGGGAGCAAAGAGAGCAAGGTTTACAGCAGTAGAGATGATGGAGGGGAGATGAATTTCAATCAGGTTAGCAATTATAGCTTTGGTGAAGCTGAAGCATTGACTGATGAAATTGAACAAGAATCTGAGATTGTCGGGGAGGTTTTGAGGATCAAAGAGATTCTCAATAATTTTGAAGAAGAGTCTGATTCAGTGTTGTTTGAATCCCTTAGAAGACTTGAATTGATGGCTCTATCAGTTGATGCCCTGCAGGCAACTGAGATTGGCAAGGCTGTTAATGGTCTTCGAAAGCATGGATCGAAGCGCATTCGCCATCTTGTTCGATTCCTTATCACAGAGTGGAAAGAAATGGTGGACATGTGGGTAAAAGCTACAGCTGCTGTTCATGGTTCAGAAGTCACACCGGATTCGAAAAGTATGCCTGTATCTGAACAAGAAGAAGATGATTATGAAGATGGGCTTCCCTCTCCTCCTTTAGATGAAGCTGCATTTTTTACCACTCAGCCCACATCAATGGAGCTCTCACAATTCTTTGATGGCATGGACGATGATGGAAATCCTCGAAACAGTGGGGAGTTCGTCAAGAAGCGCGATAATGGAAGAAAAACATCGAGTGGCAGTCAAAACCCTATGAGGTGTAAACAACAAACCACTCGAGAGGTTAATGTGGTTGCTAAGGACAATAAGAGTCAAATGAAAGAACAAGTTGTGAAGCCAAACAAGCCACCGTCAAATGCAAATTCTGGGTTTTCGAGGCTGCAGAAGCCAAGCACCGTGCAGAAGGACAATCACGAGAAGTTGCAGCGTAAAGTGGAGAAGCCTACGATCCCAAAGAGGAGCCTACAAGATAAGTTCAAGTGTTCGGATGAGGTTGCAGTTCAAGTGAAACTAGAAGCCACTAAGAGGAAACTGCAAGAGAGTTACCAACAAGCTGAAAACGCCAAAAAGCAGCGGACGATACAGGTTATGGAACTACACGATATTCCGAAGCAGGGAATGGGCCACAGAAATGTGCACCTAAAATCTGGAGGCCACAATCGGCATTGGACAAACGGGCGGCAATCAGGTGGAAGATCATATACTAAAAGCTCCCTGGCAAACGGTGTCTTGACCTACTCTACCTGCTTCAAGGTAAACAACAAGAAACTTGGTGTCACTGTGTTGTGCCAGAGAAGGCGATTCCGATTCAAAGGAGAATCGGAGATGGAAAAAAAAAGAAAAAAAAAAAAAGAAAAAAAAAAGAAAAAAAGAAAGAACGATTTCATAGTTGAAGTGCATTTTGAAGTACAGAGAATTTCTTCTTATGGAATTTGGGAGGCAAAATTATATAGCTTTTATGGGTGGTTGCTCAGGGAGTGTTGA

Coding sequence (CDS)

ATGTCCGCCAAGTCTGGGTCCTTGGACTACTGGAGGGATTACTTCCGGAATGCGAATTCGGATATTTTTAGCTTAATCGATTACGCAATCTTGGTGGCGGCTTCCGATTGTCCCAAGGAGTTCAGATTGAGGAGAGATCGAATTGCAGAGCAGTTGTTTTCATGCCGATTGACTCGCTGTTTGGGTTGCGACCGAGTGGAGCTGGCGGTGGCTGGCGATGTGGACGGCGAAACGGGTTTCAAGAGCGATTCTGCCGGAGATGGGCGTGCGTTTGAGGGCGGTGGGAGCAAAGAGAGCAAGGTTTACAGCAGTAGAGATGATGGAGGGGAGATGAATTTCAATCAGGTTAGCAATTATAGCTTTGGTGAAGCTGAAGCATTGACTGATGAAATTGAACAAGAATCTGAGATTGTCGGGGAGGTTTTGAGGATCAAAGAGATTCTCAATAATTTTGAAGAAGAGTCTGATTCAGTGTTGTTTGAATCCCTTAGAAGACTTGAATTGATGGCTCTATCAGTTGATGCCCTGCAGGCAACTGAGATTGGCAAGGCTGTTAATGGTCTTCGAAAGCATGGATCGAAGCGCATTCGCCATCTTGTTCGATTCCTTATCACAGAGTGGAAAGAAATGGTGGACATGTGGGTAAAAGCTACAGCTGCTGTTCATGGTTCAGAAGTCACACCGGATTCGAAAAGTATGCCTGTATCTGAACAAGAAGAAGATGATTATGAAGATGGGCTTCCCTCTCCTCCTTTAGATGAAGCTGCATTTTTTACCACTCAGCCCACATCAATGGAGCTCTCACAATTCTTTGATGGCATGGACGATGATGGAAATCCTCGAAACAGTGGGGAGTTCGTCAAGAAGCGCGATAATGGAAGAAAAACATCGAGTGGCAGTCAAAACCCTATGAGGTGTAAACAACAAACCACTCGAGAGGTTAATGTGGTTGCTAAGGACAATAAGAGTCAAATGAAAGAACAAGTTGTGAAGCCAAACAAGCCACCGTCAAATGCAAATTCTGGGTTTTCGAGGCTGCAGAAGCCAAGCACCGTGCAGAAGGACAATCACGAGAAGTTGCAGCGTAAAGTGGAGAAGCCTACGATCCCAAAGAGGAGCCTACAAGATAAGTTCAAGTGTTCGGATGAGGTTGCAGTTCAAGTGAAACTAGAAGCCACTAAGAGGAAACTGCAAGAGAGTTACCAACAAGCTGAAAACGCCAAAAAGCAGCGGACGATACAGGTTATGGAACTACACGATATTCCGAAGCAGGGAATGGGCCACAGAAATGTGCACCTAAAATCTGGAGGCCACAATCGGCATTGGACAAACGGGCGGCAATCAGGTGGAAGATCATATACTAAAAGCTCCCTGGCAAACGGTGTCTTGACCTACTCTACCTGCTTCAAGGTAAACAACAAGAAACTTGGTGTCACTGTGTTGTGCCAGAGAAGGCGATTCCGATTCAAAGGAGAATCGGAGATGGAAAAAAAAAGAAAAAAAAAAAAAGAAAAAAAAAAGAAAAAAAGAAAGAACGATTTCATAGTTGAAGTGCATTTTGAAGTACAGAGAATTTCTTCTTATGGAATTTGGGAGGCAAAATTATATAGCTTTTATGGGTGGTTGCTCAGGGAGTGTTGA

Protein sequence

MSAKSGSLDYWRDYFRNANSDIFSLIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRCLGCDRVELAVAGDVDGETGFKSDSAGDGRAFEGGGSKESKVYSSRDDGGEMNFNQVSNYSFGEAEALTDEIEQESEIVGEVLRIKEILNNFEEESDSVLFESLRRLELMALSVDALQATEIGKAVNGLRKHGSKRIRHLVRFLITEWKEMVDMWVKATAAVHGSEVTPDSKSMPVSEQEEDDYEDGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGEFVKKRDNGRKTSSGSQNPMRCKQQTTREVNVVAKDNKSQMKEQVVKPNKPPSNANSGFSRLQKPSTVQKDNHEKLQRKVEKPTIPKRSLQDKFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQVMELHDIPKQGMGHRNVHLKSGGHNRHWTNGRQSGGRSYTKSSLANGVLTYSTCFKVNNKKLGVTVLCQRRRFRFKGESEMEKKRKKKKEKKKKKRKNDFIVEVHFEVQRISSYGIWEAKLYSFYGWLLREC

Homology

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BLAST of CmoCh06G000310 vs. ExPASy Swiss-Prot
Match: Q9FHK9 (Probable mediator of RNA polymerase II transcription subunit 26b OS=Arabidopsis thaliana OX=3702 GN=MED26B PE=2 SV=1)

HSP 1 Score: 323.2 bits (827), Expect = 5.8e-87
Identity = 216/462 (46.75%), Postives = 282/462 (61.04%), Query Frame = 0


Query: 5   SGSLDYWRDYF-RNANSDIFSLIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRCLGC 64
           SGSLD WR+YF R  +SDIF +ID+AI+VAA+DCP +F+ RRD+IAE LFSCR+ RC+GC
Sbjct: 4   SGSLDSWREYFRRRGDSDIFGIIDHAIMVAATDCPNKFKSRRDKIAELLFSCRVNRCVGC 63

Query: 65  DRVELAVAGDVDGETGFKSDSAGDGRAFE----GGGSKESKVYSSRDDGGEMNFNQVSNY 124
           D +EL+V GD +   G   +  G     E     GGSKESK  SSR D  ++    VSNY
Sbjct: 64  DHLELSVPGDDEANRGTTGNGGGGTAVDEDYEVAGGSKESKANSSRGDNNQI----VSNY 123

Query: 125 SFGEAEALTDEIEQESEIVGEVLRIKEILNNFEEESDSVLFESLRRLELMALSVDALQAT 184
           +F EAEAL+DEIE+ S +  EV RIKEIL N E+E +SVL +SLR L+LM+L+VD L++T
Sbjct: 124 TFDEAEALSDEIEEFSVVSKEVARIKEILLNKEDEPNSVLLDSLRHLKLMSLNVDILKST 183

Query: 185 EIGKAVNGLRKHGSKRIRHLVRFLITEWKEMVDMWVKATAAVHGSEVTPDSKSMPVSEQE 244
           EIGKAVNGLRKH S +IR L + LI EWKE+VD WV  T  + G+E TP+S +  V ++E
Sbjct: 184 EIGKAVNGLRKHSSDKIRQLAKTLIAEWKELVDQWVNTTKEITGAEGTPESANPSVLDEE 243

Query: 245 EDDYEDGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGEFVKKRDNGRKTSSG 304
           E       PS P D    FT +P   E+S FFD +D DGNPRNS E    R++ R+    
Sbjct: 244 E-----AFPSLPYD-VDIFTPEPNGFEISHFFDSLDFDGNPRNSEEHNTSREHERR---- 303

Query: 305 SQNPMRCKQQTTREVNVVAKDNKSQMKEQVVKPNKPPSNAN-SGFSRLQKPSTVQKDNHE 364
            QN  + K + T          + ++++   +  KP S  +  G  R  K ST Q+  +E
Sbjct: 304 PQNIAKRKPEGT----------QMRIQDAPFRSIKPSSATDFDGTRRPVKQSTEQRMKNE 363

Query: 365 KLQ-RKVEKPTIPKRSL------------QDKFKCSDEVAVQVKLEATKRKLQESYQQAE 424
            +   K EKP I ++ +            Q+K K  D      K E  KRKLQESYQ  E
Sbjct: 364 TVSVHKSEKPMIQRKPVVTEQKRKAPGPQQEKLKGLD---ADAKFEFAKRKLQESYQHHE 423

Query: 425 NAKKQRTIQVMELHDIPKQGMGHRNVHLKSGGHNRHWTNGRQ 448
           NAKKQRTIQV+E+  IPKQG   +    + G  NR+W NGR+
Sbjct: 424 NAKKQRTIQVLEM--IPKQGSAQKPQLKRPGMSNRNWANGRK 436

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BLAST of CmoCh06G000310 vs. ExPASy Swiss-Prot
Match: F4J4Y5 (Probable mediator of RNA polymerase II transcription subunit 26a OS=Arabidopsis thaliana OX=3702 GN=MED26A PE=3 SV=1)

HSP 1 Score: 255.4 bits (651), Expect = 1.5e-66
Identity = 181/427 (42.39%), Postives = 245/427 (57.38%), Query Frame = 0


Query: 5   SGSLDYWRDYFRNANSDIFSLIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRCLGCD 64
           S SLD WR+YFR  +SDIF +ID+AI+VAA+D PKEF+ R DRIAE LFSC+++RC+GCD
Sbjct: 7   SVSLDTWREYFRRGDSDIFGIIDHAIMVAAADWPKEFKSRSDRIAELLFSCKVSRCIGCD 66

Query: 65  RVELAVAGDVDGETGFKSDSAGDGRAFEGGGSKESKVYSSRDDGGEMNFNQVSNYSFGEA 124
            +EL++AGD         ++A +     GGG +                        G++
Sbjct: 67  HLELSIAGD---------EAAVEIVGVGGGGDR------------------------GDS 126

Query: 125 EALTDEIEQESEIVGEVLRIKEILNNFEEESDSVLFESLRRLELMALSVDALQATEIGKA 184
              T E E+ S  V EV+RI++IL+N ++E DSVL ESLR+LE M++SVD L+ TEIGKA
Sbjct: 127 GVATGEGEEASVSVDEVMRIRDILSNKDDEKDSVLLESLRKLESMSMSVDILKDTEIGKA 186

Query: 185 VNGLRKHGSKRIRHLVRFLITEWKEMVDMWVKATAAVHGSEVTPDSKSMPVSEQEEDDYE 244
           VNGLR+H S +I  L + L  EWK +VD W+     + G+E TP+S ++ V ++EE    
Sbjct: 187 VNGLRRHSSDKISKLAKTLFAEWKRLVDQWMNTPEEMAGTEGTPESLNLSVIDEEE---- 246

Query: 245 DGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGEFVKKRDNGRKTSSGSQNPM 304
              PSPP D    +  +P   ELSQ  D +D DGNPR+S   V+ +   +  SS  + P 
Sbjct: 247 -AFPSPPHD-LDIYAPEPNGFELSQILDCLDCDGNPRHS---VESKHERKSQSSAGRRP- 306

Query: 305 RCKQQTTREVNVVAK---DNKSQMKEQVVKPNKPPSNANSGFSRLQKPSTVQKDNHEKLQ 364
               + T + NVV +   D +++ +E  V+P K  +       R  K S  Q  +   +Q
Sbjct: 307 ----KGTNDANVVGRYCNDQQTRREEADVRPMKHSATDVVEPKRQTKQSREQMVS--AIQ 366

Query: 365 RKVEKPTIPKRSL----QDKFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQVME 424
           RK    T  KR L    QDK K  D      K E  KRKLQESY Q ENAK+QRTIQV+E
Sbjct: 367 RKPTAVTEQKRKLAGPQQDKLKALDP---DSKFEFAKRKLQESYHQHENAKRQRTIQVLE 379

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BLAST of CmoCh06G000310 vs. ExPASy Swiss-Prot
Match: F4KFC7 (Probable mediator of RNA polymerase II transcription subunit 26c OS=Arabidopsis thaliana OX=3702 GN=MED26C PE=1 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 2.1e-20
Identity = 126/441 (28.57%), Postives = 192/441 (43.54%), Query Frame = 0


Query: 8   LDYWRDYFRNANSDIFSLIDYAILVAASDCPKEFRLRRDRIAEQLFSCRL-TRCLGCDRV 67
           LD +R    NA  D+++ ID AILVA+ D  +E + RRD I E+L++  +  +C  CD  
Sbjct: 3   LDDFRSVMDNAGVDVWTFIDTAILVASLDYGQELKRRRDNIVERLYATSMANKCRNCD-- 62

Query: 68  ELAVAGDVDGETGFKSDSAGDGRAFE--GGGSKESKVYSSRDDGGEMNFNQVSNYSFGEA 127
                G     T        +GR  E      +E    ++ ++  E + N   +  F   
Sbjct: 63  ----FGGGGNVTEAAIGRVNNGRVHEETEEEDEEGVTAAAEEEVREKSVNVEDDDDFDPF 122

Query: 128 EALTDEIEQESEIVGEVLRIKEILNNFEEESDSVLFESLRRLELMALSVDALQATEIGKA 187
             L D+ EQ+S     ++ IKE L +  + S+  L E L+ LE M ++  ALQ T+IG+ 
Sbjct: 123 AGLFDD-EQKS-----IVEIKEKLED-PDLSEESLVELLQNLEDMDITFQALQETDIGRH 182

Query: 188 VNGLRKHGSKRIRHLVRFLITEWKEMVDMWVKATAAVHGSEVTPDSKSMPVSEQEEDDYE 247
           VN +RKH S  +R L + L+ +WKE VD WVK        ++ P S    +   E+   +
Sbjct: 183 VNRVRKHPSNNVRRLAKQLVKKWKETVDEWVKFN---QPGDLEPPS----LIADEDSPVQ 242

Query: 248 DGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGEFVKKRDNGRKTSSGSQNPM 307
             L +    +   F   P                             NG  +SS + N  
Sbjct: 243 KALHNGSRQQVPDFGYSPVP--------------------------QNGYSSSSKNSN-- 302

Query: 308 RCKQQTTREVNVVAKDNKSQMKEQVVKPNKPPSNANSGFSRLQKPSTVQKDNHEKLQRKV 367
               +  R+   VA     Q + +   P KP            +PS  Q+          
Sbjct: 303 --ITEPERKPRPVA----PQPRRESPSPAKP-----------SRPSPSQQ---------- 353

Query: 368 EKPTIPKRSLQDKFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQVMELHDIPKQ 427
              TIP+          D+   +V  +  +++LQ++Y+QAENAKKQRTIQVM++HDIPK 
Sbjct: 363 ---TIPR----------DKEHKEVDFDTARKRLQQNYRQAENAKKQRTIQVMDIHDIPKP 353

Query: 428 GMGHRNVHLKSGGHN---RHW 443
             G      + GG +   RHW
Sbjct: 423 KKG--GFFPRKGGSSQGGRHW 353

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BLAST of CmoCh06G000310 vs. ExPASy TrEMBL
Match: A0A6J1FCK1 (probable mediator of RNA polymerase II transcription subunit 26b OS=Cucurbita moschata OX=3662 GN=LOC111442859 PE=4 SV=1)

HSP 1 Score: 860.9 bits (2223), Expect = 2.9e-246
Identity = 446/447 (99.78%), Postives = 447/447 (100.00%), Query Frame = 0


Query: 1   MSAKSGSLDYWRDYFRNANSDIFSLIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC 60
           MSAKSGSLDYWRDYFRNANSDIFSLIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC
Sbjct: 1   MSAKSGSLDYWRDYFRNANSDIFSLIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC 60

Query: 61  LGCDRVELAVAGDVDGETGFKSDSAGDGRAFEGGGSKESKVYSSRDDGGEMNFNQVSNYS 120
           LGCDRVELAVAGDVDGETGFKSDSAGDGRAFEGGGSKESKVYSSRDDGGEMNFNQVSNYS
Sbjct: 61  LGCDRVELAVAGDVDGETGFKSDSAGDGRAFEGGGSKESKVYSSRDDGGEMNFNQVSNYS 120

Query: 121 FGEAEALTDEIEQESEIVGEVLRIKEILNNFEEESDSVLFESLRRLELMALSVDALQATE 180
           FGEAEALTDEIEQESEIVGEVLRIKEILNNFEEESDSVLFESLRRLELMALSVDALQATE
Sbjct: 121 FGEAEALTDEIEQESEIVGEVLRIKEILNNFEEESDSVLFESLRRLELMALSVDALQATE 180

Query: 181 IGKAVNGLRKHGSKRIRHLVRFLITEWKEMVDMWVKATAAVHGSEVTPDSKSMPVSEQEE 240
           IGKAVNGLRKHGSKRIRHLVRFLITEWKEMVDMWVKATAAVHGSEVTPDSKSMPVSEQEE
Sbjct: 181 IGKAVNGLRKHGSKRIRHLVRFLITEWKEMVDMWVKATAAVHGSEVTPDSKSMPVSEQEE 240

Query: 241 DDYEDGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGEFVKKRDNGRKTSSGS 300
           DDYEDGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGEFVKKRDNGRKTSSGS
Sbjct: 241 DDYEDGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGEFVKKRDNGRKTSSGS 300

Query: 301 QNPMRCKQQTTREVNVVAKDNKSQMKEQVVKPNKPPSNANSGFSRLQKPSTVQKDNHEKL 360
           QNPMRCKQQTTREVNVVAKDNKSQMKEQVVKPNKPPSNANSGFSRLQKPSTVQKDNHEKL
Sbjct: 301 QNPMRCKQQTTREVNVVAKDNKSQMKEQVVKPNKPPSNANSGFSRLQKPSTVQKDNHEKL 360

Query: 361 QRKVEKPTIPKRSLQDKFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQVMELHD 420
           QRKVEKPTIPKRSLQDKFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQVMELHD
Sbjct: 361 QRKVEKPTIPKRSLQDKFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQVMELHD 420

Query: 421 IPKQGMGHRNVHLKSGGHNRHWTNGRQ 448
           IPKQGMGHRNVHLKSGGHNRHWTNGR+
Sbjct: 421 IPKQGMGHRNVHLKSGGHNRHWTNGRR 447

[Close]

BLAST of CmoCh06G000310 vs. ExPASy TrEMBL
Match: A0A6J1I7W1 (probable mediator of RNA polymerase II transcription subunit 26b OS=Cucurbita maxima OX=3661 GN=LOC111469992 PE=4 SV=1)

HSP 1 Score: 840.5 bits (2170), Expect = 4.0e-240
Identity = 439/453 (96.91%), Postives = 443/453 (97.79%), Query Frame = 0


Query: 1   MSAKSGSLDYWRDYFRNANSDIFSLIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC 60
           MSAKSGSLDYWRDYFRNANSDIFSLIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC
Sbjct: 1   MSAKSGSLDYWRDYFRNANSDIFSLIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC 60

Query: 61  LGCDRVELAVAGDVDGETGFKSDSAGDGRAFEGGGSKESKVYSSRDDGGEMNFNQVSNYS 120
           LGCDRVELAVAGDVD ETGFKSDSAGDGRAFEGGGSKESKVYSSRDDGGEMNFNQVSNYS
Sbjct: 61  LGCDRVELAVAGDVDCETGFKSDSAGDGRAFEGGGSKESKVYSSRDDGGEMNFNQVSNYS 120

Query: 121 FGEAEALTDEIEQESEIVGEVLRIKEILNNFEEESDSVLFESLRRLELMALSVDALQATE 180
           FGEAEALTDEIEQESEIVGEVLRIKEILNNFEEESDSVLFESLRRLELMALSVDALQATE
Sbjct: 121 FGEAEALTDEIEQESEIVGEVLRIKEILNNFEEESDSVLFESLRRLELMALSVDALQATE 180

Query: 181 IGKAVNGLRKHGSKRIRHLVRFLITEWKEMVDMWVKATAAVHGSEVTPDSKSMPVSEQEE 240
           IGKAVNGLRKHGSKRIRHLVRFLITEWKEMVD+WVKATAAVHGSEVTPDSKSMP SEQEE
Sbjct: 181 IGKAVNGLRKHGSKRIRHLVRFLITEWKEMVDLWVKATAAVHGSEVTPDSKSMPASEQEE 240

Query: 241 DDYEDGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGEFVKKRDNGRKTSSGS 300
           DDYEDGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGEFVK+RDNGRKTS+GS
Sbjct: 241 DDYEDGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGEFVKERDNGRKTSNGS 300

Query: 301 QNPMRCKQQTTREVNVVA------KDNKSQMKEQVVKPNKPPSNANSGFSRLQKPSTVQK 360
           QNPMRCKQQTTREVNVVA      KDNKSQMKEQVVKPNKPPSNANSG SR QKPSTVQK
Sbjct: 301 QNPMRCKQQTTREVNVVAKDNRESKDNKSQMKEQVVKPNKPPSNANSGLSRPQKPSTVQK 360

Query: 361 DNHEKLQRKVEKPTIPKRSLQDKFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQ 420
           DNHEKLQRKVEKPTIPKRSLQDKFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQ
Sbjct: 361 DNHEKLQRKVEKPTIPKRSLQDKFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQ 420

Query: 421 VMELHDIPKQGMGHRNVHLKSGGHNRHWTNGRQ 448
           VMELHDIPKQGMGHRNVHLKSGGHNRHWTNGR+
Sbjct: 421 VMELHDIPKQGMGHRNVHLKSGGHNRHWTNGRR 453

[Close]

BLAST of CmoCh06G000310 vs. ExPASy TrEMBL
Match: A0A5A7UDQ2 (Putative mediator of RNA polymerase II transcription subunit 26b OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G006410 PE=4 SV=1)

HSP 1 Score: 727.2 bits (1876), Expect = 4.9e-206
Identity = 385/452 (85.18%), Postives = 413/452 (91.37%), Query Frame = 0


Query: 1   MSAKSGSLDYWRDYFRNANSDIFSLIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC 60
           M+AKSGSLD WR+YFRNANSDIF +IDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC
Sbjct: 1   MAAKSGSLDSWRNYFRNANSDIFGIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC 60

Query: 61  LGCDRVELAVAGDV---DGETGFKSDSAGDGRAFEGGGSKESKVYSSRDDGGEMNFNQVS 120
           LGCDRVELAVAGD+   DGETGFKSD AGDG  FE GGSKESKVYSSRDD GEMN N+VS
Sbjct: 61  LGCDRVELAVAGDIDGDDGETGFKSDFAGDGCEFEAGGSKESKVYSSRDDIGEMNCNRVS 120

Query: 121 NYSFGEAEALTDEIEQESEIVGEVLRIKEILNNFEEESDSVLFESLRRLELMALSVDALQ 180
           N+SFGEAEALTDEIEQES+IVGEVLRIKEILNNFE+ESDSVLFESLRRLELMALSVD LQ
Sbjct: 121 NFSFGEAEALTDEIEQESQIVGEVLRIKEILNNFEDESDSVLFESLRRLELMALSVDTLQ 180

Query: 181 ATEIGKAVNGLRKHGSKRIRHLVRFLITEWKEMVDMWVKATAAVHGSEVTPDSKSMPVSE 240
           ATEIGKAVN LRKHGSKRIRHL R LI EWK+MVD+WV+ATAAV G+EVTPDSKS   + 
Sbjct: 181 ATEIGKAVNCLRKHGSKRIRHLARVLIMEWKDMVDVWVQATAAVQGAEVTPDSKSKSAAV 240

Query: 241 QEEDDY-EDGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGEFVKKRDNGRKT 300
           +EEDDY E+GLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSG+FVK R+N RKT
Sbjct: 241 KEEDDYEEEGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGDFVKNRNNVRKT 300

Query: 301 SSGSQNPMRCKQQTTREVNVVAKDNKSQMKEQVVKP-NKPPSNANSGFSRLQKPSTVQKD 360
           S+G+QNP RC QQTTREVNV++K+NK+QMKEQVVKP NKP SN NSG  R QK ST QKD
Sbjct: 301 SNGNQNPTRCNQQTTREVNVLSKENKTQMKEQVVKPNNKPSSNTNSGLLRQQKLSTEQKD 360

Query: 361 NHEKLQRKVEKPTIPKRSLQDKFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQV 420
           NHEK QRK+EKPTIPKR+ QD FKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQV
Sbjct: 361 NHEKFQRKLEKPTIPKRNQQDNFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQV 420

Query: 421 MELHDIPKQGMGHRNVHLKSGGHNRHWTNGRQ 448
           MELHD+PKQG+GHRN HLKSGG NRHWTNGR+
Sbjct: 421 MELHDLPKQGIGHRNPHLKSGGFNRHWTNGRR 452

[Close]

BLAST of CmoCh06G000310 vs. ExPASy TrEMBL
Match: A0A1S3B7K4 (probable mediator of RNA polymerase II transcription subunit 26b OS=Cucumis melo OX=3656 GN=LOC103486863 PE=4 SV=1)

HSP 1 Score: 727.2 bits (1876), Expect = 4.9e-206
Identity = 385/452 (85.18%), Postives = 413/452 (91.37%), Query Frame = 0


Query: 1   MSAKSGSLDYWRDYFRNANSDIFSLIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC 60
           M+AKSGSLD WR+YFRNANSDIF +IDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC
Sbjct: 1   MAAKSGSLDSWRNYFRNANSDIFGIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC 60

Query: 61  LGCDRVELAVAGDV---DGETGFKSDSAGDGRAFEGGGSKESKVYSSRDDGGEMNFNQVS 120
           LGCDRVELAVAGD+   DGETGFKSD AGDG  FE GGSKESKVYSSRDD GEMN N+VS
Sbjct: 61  LGCDRVELAVAGDIDGDDGETGFKSDFAGDGCEFEAGGSKESKVYSSRDDIGEMNCNRVS 120

Query: 121 NYSFGEAEALTDEIEQESEIVGEVLRIKEILNNFEEESDSVLFESLRRLELMALSVDALQ 180
           N+SFGEAEALTDEIEQES+IVGEVLRIKEILNNFE+ESDSVLFESLRRLELMALSVD LQ
Sbjct: 121 NFSFGEAEALTDEIEQESQIVGEVLRIKEILNNFEDESDSVLFESLRRLELMALSVDTLQ 180

Query: 181 ATEIGKAVNGLRKHGSKRIRHLVRFLITEWKEMVDMWVKATAAVHGSEVTPDSKSMPVSE 240
           ATEIGKAVN LRKHGSKRIRHL R LI EWK+MVD+WV+ATAAV G+EVTPDSKS   + 
Sbjct: 181 ATEIGKAVNCLRKHGSKRIRHLARVLIMEWKDMVDVWVQATAAVQGAEVTPDSKSKSAAV 240

Query: 241 QEEDDY-EDGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGEFVKKRDNGRKT 300
           +EEDDY E+GLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSG+FVK R+N RKT
Sbjct: 241 KEEDDYEEEGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGDFVKNRNNVRKT 300

Query: 301 SSGSQNPMRCKQQTTREVNVVAKDNKSQMKEQVVKP-NKPPSNANSGFSRLQKPSTVQKD 360
           S+G+QNP RC QQTTREVNV++K+NK+QMKEQVVKP NKP SN NSG  R QK ST QKD
Sbjct: 301 SNGNQNPTRCNQQTTREVNVLSKENKTQMKEQVVKPNNKPSSNTNSGLLRQQKLSTEQKD 360

Query: 361 NHEKLQRKVEKPTIPKRSLQDKFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQV 420
           NHEK QRK+EKPTIPKR+ QD FKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQV
Sbjct: 361 NHEKFQRKLEKPTIPKRNQQDNFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQV 420

Query: 421 MELHDIPKQGMGHRNVHLKSGGHNRHWTNGRQ 448
           MELHD+PKQG+GHRN HLKSGG NRHWTNGR+
Sbjct: 421 MELHDLPKQGIGHRNPHLKSGGFNRHWTNGRR 452

[Close]

BLAST of CmoCh06G000310 vs. ExPASy TrEMBL
Match: A0A0A0LBK9 (TFIIS N-terminal domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G817210 PE=4 SV=1)

HSP 1 Score: 716.8 bits (1849), Expect = 6.6e-203
Identity = 380/452 (84.07%), Postives = 409/452 (90.49%), Query Frame = 0


Query: 1   MSAKSGSLDYWRDYFRNANSDIFSLIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC 60
           M+AKSGSLD WR+YFRNANSDIF +IDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC
Sbjct: 1   MAAKSGSLDSWRNYFRNANSDIFGIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC 60

Query: 61  LGCDRVELAVAGDV---DGETGFKSDSAGDGRAFEGGGSKESKVYSSRDDGGEMNFNQVS 120
           LGCDRVELAVAGD+   DGETGFKSD   DG  FE GGSKESKVYSSRDD GEMN N+VS
Sbjct: 61  LGCDRVELAVAGDIDGDDGETGFKSDFVRDGCEFEAGGSKESKVYSSRDDIGEMNCNRVS 120

Query: 121 NYSFGEAEALTDEIEQESEIVGEVLRIKEILNNFEEESDSVLFESLRRLELMALSVDALQ 180
           N+SFGEAEALTDEIEQES+IVGEVLRIKEILNNFE+ESD VLFESLRRLELMALSVD LQ
Sbjct: 121 NFSFGEAEALTDEIEQESQIVGEVLRIKEILNNFEDESDPVLFESLRRLELMALSVDTLQ 180

Query: 181 ATEIGKAVNGLRKHGSKRIRHLVRFLITEWKEMVDMWVKATAAVHGSEVTPDSKSMPVSE 240
           ATEIGKAVN LRKHGSKRIRHL R LI EWKEMVD+WV+ATAAV G+EVTPDSK+   + 
Sbjct: 181 ATEIGKAVNCLRKHGSKRIRHLARVLIMEWKEMVDLWVQATAAVQGAEVTPDSKNKSAAV 240

Query: 241 QEEDDY-EDGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGEFVKKRDNGRKT 300
           +EEDDY E+GLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSG+FVK R+N RKT
Sbjct: 241 KEEDDYEEEGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGDFVKNRNNVRKT 300

Query: 301 SSGSQNPMRCKQQTTREVNVVAKDNKSQMKEQVVKP-NKPPSNANSGFSRLQKPSTVQKD 360
           S+G+QNP RC QQTTREVNV++K+NK+QMKEQVVKP NKP SN NSG  R QK ST QKD
Sbjct: 301 SNGNQNPTRCNQQTTREVNVLSKENKTQMKEQVVKPNNKPSSNTNSGLLRAQKLSTEQKD 360

Query: 361 NHEKLQRKVEKPTIPKRSLQDKFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQV 420
           NHEK QRK+EKPTIPKR+ QD FKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQV
Sbjct: 361 NHEKFQRKLEKPTIPKRNQQDNFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQV 420

Query: 421 MELHDIPKQGMGHRNVHLKSGGHNRHWTNGRQ 448
           MELHD+PKQG+GHRN HLKSGG NR+W NGR+
Sbjct: 421 MELHDLPKQGIGHRNPHLKSGGFNRNWANGRR 452

[Close]

BLAST of CmoCh06G000310 vs. TAIR 10
Match: AT5G05140.1 (Transcription elongation factor (TFIIS) family protein )

HSP 1 Score: 323.2 bits (827), Expect = 4.1e-88
Identity = 216/462 (46.75%), Postives = 282/462 (61.04%), Query Frame = 0


Query: 5   SGSLDYWRDYF-RNANSDIFSLIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRCLGC 64
           SGSLD WR+YF R  +SDIF +ID+AI+VAA+DCP +F+ RRD+IAE LFSCR+ RC+GC
Sbjct: 4   SGSLDSWREYFRRRGDSDIFGIIDHAIMVAATDCPNKFKSRRDKIAELLFSCRVNRCVGC 63

Query: 65  DRVELAVAGDVDGETGFKSDSAGDGRAFE----GGGSKESKVYSSRDDGGEMNFNQVSNY 124
           D +EL+V GD +   G   +  G     E     GGSKESK  SSR D  ++    VSNY
Sbjct: 64  DHLELSVPGDDEANRGTTGNGGGGTAVDEDYEVAGGSKESKANSSRGDNNQI----VSNY 123

Query: 125 SFGEAEALTDEIEQESEIVGEVLRIKEILNNFEEESDSVLFESLRRLELMALSVDALQAT 184
           +F EAEAL+DEIE+ S +  EV RIKEIL N E+E +SVL +SLR L+LM+L+VD L++T
Sbjct: 124 TFDEAEALSDEIEEFSVVSKEVARIKEILLNKEDEPNSVLLDSLRHLKLMSLNVDILKST 183

Query: 185 EIGKAVNGLRKHGSKRIRHLVRFLITEWKEMVDMWVKATAAVHGSEVTPDSKSMPVSEQE 244
           EIGKAVNGLRKH S +IR L + LI EWKE+VD WV  T  + G+E TP+S +  V ++E
Sbjct: 184 EIGKAVNGLRKHSSDKIRQLAKTLIAEWKELVDQWVNTTKEITGAEGTPESANPSVLDEE 243

Query: 245 EDDYEDGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGEFVKKRDNGRKTSSG 304
           E       PS P D    FT +P   E+S FFD +D DGNPRNS E    R++ R+    
Sbjct: 244 E-----AFPSLPYD-VDIFTPEPNGFEISHFFDSLDFDGNPRNSEEHNTSREHERR---- 303

Query: 305 SQNPMRCKQQTTREVNVVAKDNKSQMKEQVVKPNKPPSNAN-SGFSRLQKPSTVQKDNHE 364
            QN  + K + T          + ++++   +  KP S  +  G  R  K ST Q+  +E
Sbjct: 304 PQNIAKRKPEGT----------QMRIQDAPFRSIKPSSATDFDGTRRPVKQSTEQRMKNE 363

Query: 365 KLQ-RKVEKPTIPKRSL------------QDKFKCSDEVAVQVKLEATKRKLQESYQQAE 424
            +   K EKP I ++ +            Q+K K  D      K E  KRKLQESYQ  E
Sbjct: 364 TVSVHKSEKPMIQRKPVVTEQKRKAPGPQQEKLKGLD---ADAKFEFAKRKLQESYQHHE 423

Query: 425 NAKKQRTIQVMELHDIPKQGMGHRNVHLKSGGHNRHWTNGRQ 448
           NAKKQRTIQV+E+  IPKQG   +    + G  NR+W NGR+
Sbjct: 424 NAKKQRTIQVLEM--IPKQGSAQKPQLKRPGMSNRNWANGRK 436

[Close]

BLAST of CmoCh06G000310 vs. TAIR 10
Match: AT3G10820.2 (Transcription elongation factor (TFIIS) family protein )

HSP 1 Score: 255.4 bits (651), Expect = 1.1e-67
Identity = 181/427 (42.39%), Postives = 245/427 (57.38%), Query Frame = 0


Query: 5   SGSLDYWRDYFRNANSDIFSLIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRCLGCD 64
           S SLD WR+YFR  +SDIF +ID+AI+VAA+D PKEF+ R DRIAE LFSC+++RC+GCD
Sbjct: 7   SVSLDTWREYFRRGDSDIFGIIDHAIMVAAADWPKEFKSRSDRIAELLFSCKVSRCIGCD 66

Query: 65  RVELAVAGDVDGETGFKSDSAGDGRAFEGGGSKESKVYSSRDDGGEMNFNQVSNYSFGEA 124
            +EL++AGD         ++A +     GGG +                        G++
Sbjct: 67  HLELSIAGD---------EAAVEIVGVGGGGDR------------------------GDS 126

Query: 125 EALTDEIEQESEIVGEVLRIKEILNNFEEESDSVLFESLRRLELMALSVDALQATEIGKA 184
              T E E+ S  V EV+RI++IL+N ++E DSVL ESLR+LE M++SVD L+ TEIGKA
Sbjct: 127 GVATGEGEEASVSVDEVMRIRDILSNKDDEKDSVLLESLRKLESMSMSVDILKDTEIGKA 186

Query: 185 VNGLRKHGSKRIRHLVRFLITEWKEMVDMWVKATAAVHGSEVTPDSKSMPVSEQEEDDYE 244
           VNGLR+H S +I  L + L  EWK +VD W+     + G+E TP+S ++ V ++EE    
Sbjct: 187 VNGLRRHSSDKISKLAKTLFAEWKRLVDQWMNTPEEMAGTEGTPESLNLSVIDEEE---- 246

Query: 245 DGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGEFVKKRDNGRKTSSGSQNPM 304
              PSPP D    +  +P   ELSQ  D +D DGNPR+S   V+ +   +  SS  + P 
Sbjct: 247 -AFPSPPHD-LDIYAPEPNGFELSQILDCLDCDGNPRHS---VESKHERKSQSSAGRRP- 306

Query: 305 RCKQQTTREVNVVAK---DNKSQMKEQVVKPNKPPSNANSGFSRLQKPSTVQKDNHEKLQ 364
               + T + NVV +   D +++ +E  V+P K  +       R  K S  Q  +   +Q
Sbjct: 307 ----KGTNDANVVGRYCNDQQTRREEADVRPMKHSATDVVEPKRQTKQSREQMVS--AIQ 366

Query: 365 RKVEKPTIPKRSL----QDKFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQVME 424
           RK    T  KR L    QDK K  D      K E  KRKLQESY Q ENAK+QRTIQV+E
Sbjct: 367 RKPTAVTEQKRKLAGPQQDKLKALDP---DSKFEFAKRKLQESYHQHENAKRQRTIQVLE 379

[Close]

BLAST of CmoCh06G000310 vs. TAIR 10
Match: AT3G10820.1 (Transcription elongation factor (TFIIS) family protein )

HSP 1 Score: 203.8 bits (517), Expect = 3.6e-52
Identity = 118/265 (44.53%), Postives = 163/265 (61.51%), Query Frame = 0


Query: 5   SGSLDYWRDYFRNANSDIFSLIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRCLGCD 64
           S SLD WR+YFR  +SDIF +ID+AI+VAA+D PKEF+ R DRIAE LFSC+++RC+GCD
Sbjct: 7   SVSLDTWREYFRRGDSDIFGIIDHAIMVAAADWPKEFKSRSDRIAELLFSCKVSRCIGCD 66

Query: 65  RVELAVAGDVDGETGFKSDSAGDGRAFEGGGSKESKVYSSRDDGGEMNFNQVSNYSFGEA 124
            +EL++AGD         ++A +     GGG +                        G++
Sbjct: 67  HLELSIAGD---------EAAVEIVGVGGGGDR------------------------GDS 126

Query: 125 EALTDEIEQESEIVGEVLRIKEILNNFEEESDSVLFESLRRLELMALSVDALQATEIGKA 184
              T E E+ S  V EV+RI++IL+N ++E DSVL ESLR+LE M++SVD L+ TEIGKA
Sbjct: 127 GVATGEGEEASVSVDEVMRIRDILSNKDDEKDSVLLESLRKLESMSMSVDILKDTEIGKA 186

Query: 185 VNGLRKHGSKRIRHLVRFLITEWKEMVDMWVKATAAVHGSEVTPDSKSMPVSEQEEDDYE 244
           VNGLR+H S +I  L + L  EWK +VD W+     + G+E TP+S ++ V ++EE    
Sbjct: 187 VNGLRRHSSDKISKLAKTLFAEWKRLVDQWMNTPEEMAGTEGTPESLNLSVIDEEE---- 232

Query: 245 DGLPSPPLDEAAFFTTQPTSMELSQ 270
              PSPP D    +  +P   ELSQ
Sbjct: 247 -AFPSPPHD-LDIYAPEPNGFELSQ 232

[Close]

BLAST of CmoCh06G000310 vs. TAIR 10
Match: AT5G09850.1 (Transcription elongation factor (TFIIS) family protein )

HSP 1 Score: 102.1 bits (253), Expect = 1.5e-21
Identity = 126/441 (28.57%), Postives = 192/441 (43.54%), Query Frame = 0


Query: 8   LDYWRDYFRNANSDIFSLIDYAILVAASDCPKEFRLRRDRIAEQLFSCRL-TRCLGCDRV 67
           LD +R    NA  D+++ ID AILVA+ D  +E + RRD I E+L++  +  +C  CD  
Sbjct: 3   LDDFRSVMDNAGVDVWTFIDTAILVASLDYGQELKRRRDNIVERLYATSMANKCRNCD-- 62

Query: 68  ELAVAGDVDGETGFKSDSAGDGRAFE--GGGSKESKVYSSRDDGGEMNFNQVSNYSFGEA 127
                G     T        +GR  E      +E    ++ ++  E + N   +  F   
Sbjct: 63  ----FGGGGNVTEAAIGRVNNGRVHEETEEEDEEGVTAAAEEEVREKSVNVEDDDDFDPF 122

Query: 128 EALTDEIEQESEIVGEVLRIKEILNNFEEESDSVLFESLRRLELMALSVDALQATEIGKA 187
             L D+ EQ+S     ++ IKE L +  + S+  L E L+ LE M ++  ALQ T+IG+ 
Sbjct: 123 AGLFDD-EQKS-----IVEIKEKLED-PDLSEESLVELLQNLEDMDITFQALQETDIGRH 182

Query: 188 VNGLRKHGSKRIRHLVRFLITEWKEMVDMWVKATAAVHGSEVTPDSKSMPVSEQEEDDYE 247
           VN +RKH S  +R L + L+ +WKE VD WVK        ++ P S    +   E+   +
Sbjct: 183 VNRVRKHPSNNVRRLAKQLVKKWKETVDEWVKFN---QPGDLEPPS----LIADEDSPVQ 242

Query: 248 DGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGEFVKKRDNGRKTSSGSQNPM 307
             L +    +   F   P                             NG  +SS + N  
Sbjct: 243 KALHNGSRQQVPDFGYSPVP--------------------------QNGYSSSSKNSN-- 302

Query: 308 RCKQQTTREVNVVAKDNKSQMKEQVVKPNKPPSNANSGFSRLQKPSTVQKDNHEKLQRKV 367
               +  R+   VA     Q + +   P KP            +PS  Q+          
Sbjct: 303 --ITEPERKPRPVA----PQPRRESPSPAKP-----------SRPSPSQQ---------- 353

Query: 368 EKPTIPKRSLQDKFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQVMELHDIPKQ 427
              TIP+          D+   +V  +  +++LQ++Y+QAENAKKQRTIQVM++HDIPK 
Sbjct: 363 ---TIPR----------DKEHKEVDFDTARKRLQQNYRQAENAKKQRTIQVMDIHDIPKP 353

Query: 428 GMGHRNVHLKSGGHN---RHW 443
             G      + GG +   RHW
Sbjct: 423 KKG--GFFPRKGGSSQGGRHW 353

The following BLAST results are available for this feature:

BLAST of CmoCh06G000310 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FHK9	5.8e-87	46.75	Probable mediator of RNA polymerase II transcription subunit 26b OS=Arabidopsis ...	[more]
F4J4Y5	1.5e-66	42.39	Probable mediator of RNA polymerase II transcription subunit 26a OS=Arabidopsis ...	[more]
F4KFC7	2.1e-20	28.57	Probable mediator of RNA polymerase II transcription subunit 26c OS=Arabidopsis ...	[more]

BLAST of CmoCh06G000310 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FCK1	2.9e-246	99.78	probable mediator of RNA polymerase II transcription subunit 26b OS=Cucurbita mo...	[more]
A0A6J1I7W1	4.0e-240	96.91	probable mediator of RNA polymerase II transcription subunit 26b OS=Cucurbita ma...	[more]
A0A5A7UDQ2	4.9e-206	85.18	Putative mediator of RNA polymerase II transcription subunit 26b OS=Cucumis melo...	[more]
A0A1S3B7K4	4.9e-206	85.18	probable mediator of RNA polymerase II transcription subunit 26b OS=Cucumis melo...	[more]
A0A0A0LBK9	6.6e-203	84.07	TFIIS N-terminal domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G8...	[more]

BLAST of CmoCh06G000310 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G05140.1	4.1e-88	46.75	Transcription elongation factor (TFIIS) family protein	[more]
AT3G10820.2	1.1e-67	42.39	Transcription elongation factor (TFIIS) family protein	[more]
AT3G10820.1	3.6e-52	44.53	Transcription elongation factor (TFIIS) family protein	[more]
AT5G09850.1	1.5e-21	28.57	Transcription elongation factor (TFIIS) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 387..414
None	No IPR available	COILS	Coil	Coil	coord: 492..512
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 269..370
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 296..350
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 351..370
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 85..104
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 222..251
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 433..453
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 278..295
None	No IPR available	PANTHER	PTHR46554:SF2	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED	coord: 1..446
None	No IPR available	CDD	cd00183	TFIIS_I	coord: 140..212 e-value: 2.55761E-20 score: 83.1266
IPR003617	Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type	SMART	SM00509	TFS2_5	coord: 141..213 e-value: 6.9E-15 score: 65.4
IPR017923	Transcription factor IIS, N-terminal	PFAM	PF08711	Med26	coord: 163..211 e-value: 7.0E-10 score: 38.8
IPR017923	Transcription factor IIS, N-terminal	PROSITE	PS51319	TFIIS_N	coord: 139..214 score: 20.201963
IPR035441	TFIIS/LEDGF domain superfamily	GENE3D	1.20.930.10	Conserved domain common to transcription factors TFIIS, elongin A, CRSP70	coord: 130..223 e-value: 1.4E-20 score: 74.8
IPR035441	TFIIS/LEDGF domain superfamily	SUPERFAMILY	47676	Conserved domain common to transcription factors TFIIS, elongin A, CRSP70	coord: 137..221
IPR044805	Mediator of RNA polymerase II transcription subunit 26a/b-like	PANTHER	PTHR46554	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED	coord: 1..446

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh06G000310.1	CmoCh06G000310.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus